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Gene Manipulation using Laser

Research Project

Project/Area Number 13308033
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioorganic chemistry
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

SAITO Isao  SAITO,Isao, 工学研究科, 教授 (20026082)

Co-Investigator(Kenkyū-buntansha) OKAMOTO Akimitsu  KYOTO UNIVERSITY, Graduate School of Engineering, Research Associate, 工学研究科, 助手 (60314233)
藤本 健造  北陸先端科学技術大学, 大学院・材料科学科, 助教授 (90293894)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥42,380,000 (Direct Cost: ¥32,600,000、Indirect Cost: ¥9,780,000)
Fiscal Year 2003: ¥10,270,000 (Direct Cost: ¥7,900,000、Indirect Cost: ¥2,370,000)
Fiscal Year 2002: ¥10,270,000 (Direct Cost: ¥7,900,000、Indirect Cost: ¥2,370,000)
Fiscal Year 2001: ¥21,840,000 (Direct Cost: ¥16,800,000、Indirect Cost: ¥5,040,000)
Keywords5-vinyluracil / 5-iododeoxyuridine / pyrimidine analogs / reversible DNA ligation
Research Abstract

We synthesized various vinyluracil analogs from 5-iododeoxyuridine-in a high yield. Vinyluracils were converted to the phosphoramidite form, and then incorporated to 5' end of oligodeoxynucleotides (ODNs). Using the vinyluracil-containing ODN, photoligation was carried out in the presence of the ODN containing pyrimidine base at 3' end and the template ODN. The photoligation efficiency was quantified using polyacrylamide gel electrophoresis. The pyrimidine possessing a carboxyvinyl group exhibited 10 times higher photoligation reactivity than 5-vinyluridine. We also found an efficient synthetic route for vinyluracil analogs. After the ODN containing 5-formyluracil was prepared, ODNs possessing vinyluracil analogs were synthesized using Wittig reaction for 5-formyluracil.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (17 results)

All Other

All Publications (17 results)

  • [Publications] Akimitu Okamot, Kazuki Tainaka, Isao Saito: "Clear Distinction of Purine Bases on the Complementary Strand by a Fluorescence Change of a Novel Fluorescent Nucleoside."JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 125(17). 4972-4973 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Akimitu Okamoto, Kazuo Tanaka, Tetsuo Fukuta, Isao Saito: "Design of Base-discriminating Fluorescent Nucleoside and Its Application to T/C SNP Typing."JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 125(31). 9296-9297 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kazuhiko Nakatani, Souta Horie, Isao Saito: "Affinity Labeling of Single Guanine Bulge."JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 125(30). 8972-8973 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Chikara Dohno, Atsusi Ogawa, Kazuhiko Nakata, Isao Saito: "Hole Trapping at N^6-Cyclopropyldeoxyadenosine Suggests a Direct Contribution Of Adenine Bases to Hole Transport through DNA."JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 125(34). 10154-10156 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Akimitsu Okamoto, Kazuki Tainaka, Isao Saito: "Clear distinction of Purine Baces on the Complementary Strand by a Fluorescence Change of a Novel Fluorescent Nucleoside"J.Am.Chem.Soc.. 125(17). 4972-4973 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Akimitsu Okamoto, Kazuo Tanaka, Tetsuo Fukuta, Isao Saito: "Design of Base-discriminating Fluorescent Nucleoside and Its Application to T/C SNP Typing"J.Am.Chem.Soc.. 125(31). 9296-9297 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kazuhiko Nakatani, Souta Horie, Isao Saito: "Affinity Labeling of Single Guanine Bulge"J.Am.Chem.Soc.. 125(30). 8972-8973 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Chikara Dohno, Atsishi Ogawa, Kazuhiko Nakatani, Isao Saito: "Hole Trapping at N6-Cyclopropyldeoxyadenosine Suggests a Direct Contribution of Adenine Bases to Hole Transport through DNA"J.Am.Chem.Soc.. 125(34). 10154-10155 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Akimitu Okamoto, Kazuki Tainaka, Isao Saito: "Clear Distinction of Purine Bases on the Complementary Strand by a Fluorescence Change of a Novel Fluorescent Nucleoside"JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 125(17). 4972-4973 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Akimitu Okamoto, Kazuo Tanaka, Tetsuo Fukuta, Isao Saito: "Design of Base-discriminating Fluorescent Nucleoside and Its Application to T/C SNP Typing"JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 125(31). 9296-9297 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kazuhiko Nakatani, Souta Horie, Isao Saito: "Affinity Labeling of Single Guanine Bulge"JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 125(30). 8972-8973 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Chikara Dohno, Atsusi Ogawa, Kazuhiko Nakatand, Isao Saito: "Hole Trapping at N^6-Cyclopropyldeoxyadenosine Suggests a Direct Contribution Of Adenine Bases to Hole Transport through DNA"JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 125(34). 10154-10155 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Akimitu Okamoto, Kazuhito Tanabe, Isao Saito: "Site-specific Discrimination of Cytosinee and 5-methylcytosine in Duplex DNA by Pentide Nucleic Acids"JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 124(35). 10262-10263 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Chikara Dohno, Kazuhiko Nakatani, Isao Saito: "Guanine of the Third Strand of C・G^*G Triplex Serves as an Effective Hole Trap"JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 124(49). 14580-14585 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Akimitu Okamoto, Keiichiro Kanatani, Toshiji Taiji, Isao Saito: "^<15>N NMR Study on Site-Selective Binding of Metal Ions to Guanine Runs in DNA : A Good Correlation with HOMO Distribution"JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 125(5). 1172-1173 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kenzo Fujimoto, Yutaka Ikeda, Shigenori Ishihata, Isao Saito: "Deoxyribonolactone formation in photoirradiation of 5-bromouraci-containing ologonucleotides by direct Cl' hydrogen abstraction"テトラヘドロン抄録紙. 43. 2243-2245 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kenzo Fujimoto, Naoki Ogawa, Shigeo Matsuda, Isao Saito: "Template Directed DNA Photoligation via Substituted 2'-deoxyuridine"Nucleic Acid Research Supplement. 1. 185-186 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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