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Dynamism of activated-selenium species: Structural biological analysis of mechanism of biosynthesis of selenium-containing proteins

Research Project

Project/Area Number 13480192
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

ESAKI Nobuyoshi  Institute for Chemical Research, Professor, 化学研究所, 教授 (50135597)

Co-Investigator(Kenkyū-buntansha) TAMURA Takashi  Faculty of Agriculture, Okayama University, Associate Professor, 農学部, 助教授 (40253009)
MIHARA Hisaaki  Institute for Chemical Research, Assistant Professor, 化学研究所, 助手 (30324693)
KURIHARA Tatsuo  Institute for Chemical Research, Assistant Professor, 化学研究所, 助手 (70243087)
畑 安雄  京都大学, 化学研究所, 助教授 (10127277)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥17,100,000 (Direct Cost: ¥17,100,000)
Fiscal Year 2002: ¥6,700,000 (Direct Cost: ¥6,700,000)
Fiscal Year 2001: ¥10,400,000 (Direct Cost: ¥10,400,000)
Keywordsselenocysteine / selenocysteine lyase / selenium / selenoprotein / activated-selenium species / 部位特異的変異 / X線結晶構造解析 / プロパルギルグリシン
Research Abstract

Selenocysteine lyase (SCL) is an enzyme which specifically catalyzes the decomposition of selenocysteine to form alanine and selenium. The enzyme is proposed to be involved in an initial step of the biosynthesis of selenoproteins containing selenocysteine residues because it has an activity to deliver selenide for selenophosphate synthetase. Escherichia coli contains its homologous counterpart enzyme, cysteine desulfurase (CSD). Unlike SCL, CSD acts on both cysteine and selenocysteine as substrates. A conserved cysteine residue important for the decomposition of cysteine has been demonstrated to be not essential for the decomposition of selenocyteine. Mouse SCL has eight cysteine residues. We constructed mutant enzymes C101S, C129S, C177S, C304S, C346, C364S, C375, and C390S by site-directed mutagenesis. The mutant enzymes were purifued and characterized. The C375S and C375A mutants lost the selenocysteine lyase activity. Therefore, Cys375 is essential for the selenocysteine lyase activity of the enzyme, indicating that the mechanism of selenocysteine lyase reaction by SCL is different from that catalyzed by CSD.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] E.A.Pilon-Smits et al.: "Characterization of a NifS-like chloroplast protein from Arabidopsis. Implication for its role in sulfur and selenium metabolism"Plant Physiol.. 130・3. 1309-1318 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Pilon et al.: "Enhanced selenium tolerance and accumulation in transgenic Arabidopsis expressing a mouse selenocysteine lyase"Plant Physiol.. 131・3. 1250-1257 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Mihara et al.: "Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog : implications for its specificity toward selenocysteine"J. Biochem.. 130・3. 679-685 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Mihara et al.: "Selenocysteine lyase from mouse liver"Methods Enzymol.. 347. 198-203 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Mihara et al.: "Bacterial cysteine desulfurases : their function and mechanisms"Appl. Microbiol. Biotechnol.. 60・1-2. 12-23 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Mihara et al.: "The iscS gene is essential for the biosynthesis of 2-selenouridine in tRNA and the selenocysteine-containing formate dehydrogenase H"Proc. Natl. Acad. Sci. U.S.A.. 99・10. 6679-6683 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S.Kato et al.: "Cys328 of IscS and Cys63 of IscU Are the Sites of Disulfide Bridge Formation in a Covalently-bound IscS/IscU Complex"Proc. Natl. Acad. Sci. U.S.A.. 99・9. 5948-5952 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M.Kashiwa et al.: "Removal of soluble selenium by a selenate-reducing bacterium Bacillus sp. SF-1"Biofactors. 14・1-4. 261-265 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Mihara et al.: "Role of cysteine desulfurase in the biosynthesis of formate dehydrogenase H containing Mo, molybdopterin, selenocysteine, and Fe_4S_4 cluster"Biomed. Res. Trace Elements. 12・4. 261-262 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] E. A. Pilon-Smits et al.: "Characterization of a NifS-like chloroplast protein from Arabidopsis. Implications for its role in sulfur and selenium metabolism"Plant Physiol.. 130・3. 1309-1318 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] M. Pilon et al.: "Enhanced selenium tolerance and accumulation in transgenic Arabidopsis expressing a mouse selenocysteine lyase"Plant Physiol.. 131・3. 1250-1257 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Mihara et al.: "Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine"J. Biochem.. 130・3. 679-685 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Mihara et al.: "Selenocysteine lyase from mouse liver"Methods Enzymol.. 347. 198-203 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Mihara et al.: "Bacterial cysteine desulfurases: their function and mechanisms"Appl. Microbiol. Biotechnol.. 60・1-2. 12-23 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H. Mihara et al.: "The iscS gene is essential for the biosynthesis of 2-selenouridine in tRNA and the selenocysteine-containing formate dehydrogenase H"Proc. Natl. Acad. Sci. USA.. 99・10. 6679-6683 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Shin-ichiro Kato et al.: "Cys328 of IscS and Cys63 of IscU Are the Sites of Disulfide Bridge Formation in a Covalently-bound IscS/IscU Complex"Proc. Natl. Acad. Sci. USA. 99・9. 5948-5952 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Masami Kashiwa et al.: "Removal of soluble selenium by a selenate-reducing bacterium Bacillus Sp. SF-1"Biofactors. 14・1-4. 261-265 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Hisaaki Mihara et al.: "Role of cysteine desulfurase in the biosynthesis of formate dehydrogenase H containing Mo, molybdopterin, selenocysteine, and Fe_4S_4 cluster"Biomed. Res. Trace Elements. 12・4. 261-262 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] E.A.Pion-Smits et al.: "Characterization of a NifS-like chloroplast protein from Arabidopsis. Implications for its role in sulfur and selenium metabolism"Plant Physiol.. 130・3. 1309-1318 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Pion et al.: "Enhanced selenium tolerance and accumulation in transgenic Arabidopsis expressing a mouse selenocysteine lyase"Plant Physiol.. 131・3. 1250-1257 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Mihara et al.: "Structure of external aldimine of Escherichia coli CsdB, an IscS/ NifS homolog : implications for its specificity toward selenocysteine"J.Biochem.. 130・3. 679-685 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Mihara et al.: "No abstract Selenocysteine lyase from mouse liver"Methods Enzymol.. 347. 198-203 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Mihara et al.: "Bacterial cysteine desulfurases : their function and mechanisms"Appl.Microbiol.Biotechnol.. 60・1-2. 12-23 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Mihara et al.: "The iscS gene is essential for the biosynthesis of 2-selenouridine in tRNA and the selenocysteine-containing formate dehydrogenase H"Proc.Natl.Acad.Sci.U.S.A.. 99・10. 6679-6683 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hisaaki Mihara et al.: "Structure of External Aldimine of Escherichia coli CsdB, an IscS/NifS Homolog: Implications for Its Specificity Toward Selenocysteine"Journal of Biochemistry. (印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Shin-ichiro Kato et al.: "Cys328 of IscS and Cys63 of IscU Are the Sites of Disulfide Bridge Formation in a Covalently-bound IscS/IscU Complex"Proc. Natl. Acad. Sci. USA. (印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Masami Kashiwa et al.: "Removal of soluble selenium by a selenate-reducing bacterium Bacillus sp. SF-1"Biofactors. 14・1-4. 261-265 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hisaaki Mihara et al.: "Role of cysteine desulfurase in the biosynthesis of formate dehydrogenase H containing Mo, molybdopterin, selenocysteine, and Fe_4S_4 cluster"Biomed. Res. Trace Elements. 12・4. 261-262 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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