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Understanding the amyloid fibril formation of β2-microglobulin on the basis of protein conformation

Research Project

Project/Area Number 13480219
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionOsaka University

Principal Investigator

GOTO Yuji  Osaka University, Institute for Protein Research, Professor, 蛋白質研究所, 教授 (40153770)

Co-Investigator(Kenkyū-buntansha) NAIKI Hironobu  Fukui University, Medical School, Professor, 医学部, 教授 (10227704)
HOSHINO Masaru  Osaka Univ., Inst. for Protein Research, Research Assistant, 蛋白質研究所, 助手 (70304053)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥14,500,000 (Direct Cost: ¥14,500,000)
Fiscal Year 2003: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 2002: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 2001: ¥10,900,000 (Direct Cost: ¥10,900,000)
KeywordsAmyloid fibril / Protein folding / Stability of proteins / Dialysis-related amyloidosis / Fluorescence microscopy / H / D exchange / β2-microglobulin / Amyloid β-peptide / アミロイド病 / 蛋白質 / フォールディング / NMR / 一分子観察
Research Abstract

β2-Microglobulin (β2-m)-related amyloidosis is a serious complication in patients receiving long-term hemodialysis. To understand the mechanism of amyloid fibril formation by β2-m, we have been studying the conformation and amyloid fibril formation of recombinant human β2-m.
1.We established a novel procedure using H/D exchange of amide protons combined with NMR analysis for characterizing the conformational flexibility of β2-m amyloid fibrils at single-residue resolution. The results indicated that most residues in the middle region of the molecule, including the loop regions in the native structure, form a rigid β-sheet core, while the N-and C-termini are not part of this core. The exchange time course deviated largely from a single exponential curve, consistent with the supramolecular structure of fibrils.
2.On the other hand, real-time monitoring of fibril growth is essential to clarify the mechanism of fibril formation. Thioflavin T (ThT) is a reagent known to become strongly fluorescent upon binding to amyloid fibrils. We show that, by monitoring ThT fluorescence with total internal reflection fluorescence microscopy, amyloid fibrils of β2-m can be visualized without requiring covalent fluorescence labeling. This method was used to follow the kinetics of seed-dependent β2-m fibril extension, revealing the unidirectional extension. Since ThT binding is common to amyloid fibrils, this method will have general applicability as confirmed with the Alzheimer's amyloid β-peptide.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (30 results)

All Other

All Publications (30 results)

  • [Publications] Fernandez, Ariel: "Structural defects and the diagnosis of amyloidogenic propensity."Proc.Natl.Acad.Sci.USA. 100. 6446-6451 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Gozu, Masayo: "Conformatinal dynamics of β2-microglobulin analyzed by reduction and reoxidation of the disulfide bond."J.Biochem.. 133. 731-736 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fernandez, Ariel: "Protein folding : could hydrophobic collapse be coupled with hydrogen-bond formation?"FEBS Letters. 536. 187-192 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ban, Tadato: "Direct observation of amyloid fibril growth monitored by thioflavin T fluorescence."J.Biol.Chem.. 278. 16462-16465 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hirota-Nakaoka, Nami: "Dissolution of β_2-microglobulin amyloid fibrils by dimethylsufloxide."J.Biochem.. 134. 159-164 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Chiba, Takeshi: "Amyloid fibril formation in the context of full-length protein : Effects of proline mutations on the amyloid fibril formation of β2-microglobulin."J.Biol.Chem.. 278. 47009-47015 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hoshino, Masaru: "Mapping of the core of the β2-microglobulin amyloid fibril by H/D exchange."Nature Struct. Biol.. 9. 332-336 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Katou, Hidenori: "The role of disulfide bond in the amyloidogenic state of β2-microglobulin studied by heteronuclear NMR."Protein Sci.. 11. 2218-2229 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hong, Dong-P.: "Conformation of β2-microglobulin amyloid fibrils analyzed by reduction of the disulfide bond."J.Biol.Chem.. 277. 21554-21560 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fernandez, Ariel: "Structural defects and the diagnosis of amyloidogenic propensity."Proc.Natl.Acad.Sci.USA. 100. 6446-6451 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Gozu, Masayo: "Conformatinal dynamics of β2-microglobulin analyzed by reduction and reoxidation of the disulfide bond"J.Biochem.. 133. 731-736 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fernandez, Ariel: "Protein folding : could hydrophobic collapse be coupled with hydrogen-bond formation?"FEBS Letters. 536. 187-192 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ban, Tadato: "Direct observation of amyloid fibril growth monitored by thioflavin T fluorescence."J.Biol.Chem.. 278. 16462-16465 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Chiba, Takeshi: "Amyloid fibril formation in the context of full-length protein: Effects of proline mutations on the amyloid fibril formation of β2-microglobulin."J.Biol.Chem.. 278. 47009-47015 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Femandez, Ariel: "Structural defects and the diagnosis of amyloidogenic propensity"Prec.Natl.Acd.Sci.USA. 100. 6446-6451 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Gozu, Masayo: "Conformational dynamics of β2-microglobulin analyzed by reduction and reoxidation of the disulfide bond"J.Biochem.. 133. 731-736 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Femandez, Ariel: "Protein folding : could hydrophobic collapse be coupled with hydrogen-bond formation?"FEBS Letters. 536. 187-192 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ban, Tadato: "Direct observation of amyloid fibril growth monitored by thioflavin T fluorescence"J.Biol.chem.. 278. 16462-16465 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hirota-Nakaoka: "Dissolution of β_2-microglobulin amyloid fibrils by dimethylsulfoxide"J.Biochem.. 134. 159-164 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Chiba, Takeshi: "Amyloid fibril formation in the context of full-length protein : Effects of proline mutations on the amyloid fibril formation of β2-microglobulin"J.Biol.Chem.. 278. 47009-47015 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Martsev, S.P.: "Amyloid fibril formation of mouse VL domain under acidic pH"Biochemistry. 41(10). 3389-3395 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hoshino, M.: "Mapping of the core of the β2-microglobulin amyloid fibril by H/D exchange"Nature Struct. Biol.. 9(5). 332-336 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Katou, H.: "The role of disulfide bond in the amyloidogenic state of β2-microglobulin studied by heteronuclear NMR"Protein Sci.. 11(9). 2218-2229 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hong, D.-P.: "Conformation of β2-microglobulin amyloid fibrils analyzed by reduction of the disulfide bond"J. Biol. Chem.. 277(24). 21554-21560 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sakurai, K.: "Manipulating monomer-dimer equilibrium of bovine β-lactoglobulin by amino acid substitution"J. Biol. Chem.. 277(28). 25735-25740 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 後藤祐児: "β2ミクログロブリンのアミロイド線維形成"蛋白質核酸酵素. 47(6). 663-669 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Szewczuk, Z.: "A two-process model describes the hydrogen exchange behavior of molten globule of cytochrome c with various extents of acetylation"Biochemistry. 40(32). 9623-9630 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kazumasa Sakurai: "Salt-dependent monomer-dimer equilibrium of bovine β-lactoglobulin at pH3"Protein Sci.. 10(11). 2325-2335 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yumiko Ohhashi: "The intrachain disulfide bond of β2-microglobulin is inessential for the immunoglobulin fold at neutral pH but essential for amyloid fibril formation at acidic pH"J. Biochem.. 131(1). 45-52 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Gennady Kozhukh: "Investigation of a peptide responsible for amyloid fibril formation of β2-microglobulin by Acromobacter protease I."J. Biol. Chem.. 277(2). 1310-1315 (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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