• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Studies on the synthesis of stable-isotope-labeled amino acids canying functional group and their conformational analysis

Research Project

Project/Area Number 13640544
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Organic chemistry
Research InstitutionTokai University

Principal Investigator

OBA Makoto  Tokai University, School of High-Technology for Human Welfare, Associate Professor, 開発工学部, 助教授 (10246077)

Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2003: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2002: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2001: ¥2,100,000 (Direct Cost: ¥2,100,000)
Keywordsamino acid / stable isotope / deuterium-labeling / structure analysis / asymmetric synthesis / conformational analysis / リジン / ピログルタミン酸 / グルタミン酸 / オルトエステル / アミノ酸 / L-ピログルタミン酸 / キラルテンプレート / プロリン / ジペプチド / 安定同位体標識 / オルニチン / セリン / システイン
Research Abstract

Recently, the combination of stable isotope labeling and advanced multidimensional NMR spectroscopy has become more promising method for determining the overall and local structures of proteins in solution. In particular, the regio-and stereoselectively isotope-labeled amino acids are excellent probes for collecting precise structural information such as the side-chain conformations about specific residues. We have recently explored the methods for stereoselective deuteration of only one of the diastereotopic methyl groups and methylene protons of amino acid side-chains. However, investigation of amino acids carrying a functional group in the side chain, such as lysine, arginine, serine, cystein, aspartic acid, and so on, remains untouched despite their importance in protein function. In the present work, we investigated the regio-and stereoselective deuterium labeling of such amino acids. The representative results are as follows.
1. Asymmetric synthesis of (2S,3S,4R,5R)-[2,3,4,5-D_4]o … More rnithine was examined. The chirally deuterated 3-aminopropanal was prepared by a catalytic deuteration of an unsaturated -γ-lactone derived from L-glutamic acid followed by several functional group interconversions. Condensation of the obtained deuterium-labeled 3-aminopropanal with a chiral glycine template afforded unsaturated ornithine. The dehydroornithine was then subjected to a catalytic deuteration followed by deprotection to give the L-[2,3,4,5-D_4]ornithine.
2. Synthesis of L-[5,5,6,6-D_4]lysine starting from L-pyroglutamic acid was investigated. One carbon homologation of the side chain was carried out by cyanation of deuterated 5-iodonorvaline prepared from L-pyroglutamic acid. Catalytic deuteration of the obtained cyanide followed by the standard deprotection procedure afforded L-[5,5,6,6-D_4]lysine.
3. Synthesis of a novel 3,4-didehydropyroglutamate derivative in which the carboxylic group is protected as an ABO ester was examined. Some reactions of the obtained unsaturated pyroglutamate template such as dihydroxylation, Michael addition, and some cycloadditions were found to take place in a stereospecific manner. Catalytic deuteration of the olefin followed by acidic hydrolysis gave (2S,3S,4R)-[3,4-D_2]glutamic acid. Less

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (33 results)

All Other

All Publications (33 results)

  • [Publications] Makoto Oba: "A concise and diastereoselective synthesis of(2S,3S,4R)-3,4-dihydroxyglutamic acid"Tetrahedron Lett.. 42. 5901-5902 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Makoto Oba: "Synthesis of ^<13>C/D doubly labeled L-leucines : Probes for conformational analysis of the leucine side-chain"J.Org.Chem.. 66. 5919-5922 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Makoto Oba: "Synthesis of L-[4,5,5,5-D_4]Isoleucine : Determination of Approximate Rotamer Population About The C_β-C_γ Bond"J.Labelled Compds.Radiopharm.. 44. 141-147 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Makoto Oba: "Stereoselective synthesis of L-[2,3,4,5-D_4]ornithine"J.Labelled Compds.Radiopharm.. 45. 619-627 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Makoto Oba: "Stereoselective deuteration of chiral glycine template"Jpn.J.Deuterium Sci.. 11. 23-28 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Makoto Oba: "A concise approach to homochiral 3,4-dihydroxyglutamic acids"Tetrahedron. 58. 9359-9363 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Makoto Oba: "Synthesis and reactions of a novel 3,4-didehydropyroglutamate derivative"Chem.Commun.. 776-777 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Makoto Oba: "Radical-based transformation of vicinal diols to olefins via thioxocarbamate derivatives : a simple approach to 2',3'-didehydro-2',3'-dideoxynucleosides"Tetrahedron Lett.. 44. 4027-4029 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Makoto Oba: "A simple route to [5,5,6,6-D_4]lysine starting from L-pyroglutamic acid"Jpn.J.Deuterium Sci.. 12(in press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Makoto Oba: "Origin of Diastereoselection in Hydrosilylation of Chiral Iminium Intermediates Derived from Pyroglutamic Acid"Angew.Chem.Int.Ed.. 43(in press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "Synthesis of L-[4,5,5,5-D_4]Isoleucine : Determination of Approximate Rotamer Population About the C_β-C_γ Bond"J.Labelled Compds.Radiopharm.. 44. 141-147 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "Synthesis of^<13> C/D Doubly Labeled L-Leucines : Probes for Conformational Analysis of the Leucine Side-chain"J.Org.Chem.. 66. 5919-5922 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "A Concise and Diastereoselective Synthesis of (2S,3S,4R)-3,4-Dihydroxyglutamic Acid"Tetrahedron Lett.. 42. 5901-5902 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "Stereoselective Synthesis of L-[2,3,4,5-D_4]Ornithine"J.Labelled Compds.Radiopharm.. 45. 619-627 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "Stereoselective Deuteration of Chiral Glycine Template"J.Deuterium Sci.. 11. 23-28 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "A Concise Approach to Homochiral 3,4-Dihydroxyglutamic Acids"Tetrahedron. 58. 9359-9363 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "Synthesis and Reactions of a Novel 3,4-Didehydropyroglutamate Derivative"Chem.Commun.. 776-777 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "Radical-based Transformation of Vicinal Diols to Olefins via Thioxocarbamate Derivatives : Simple Approach to 2',3'-Didehydro-2',3'-dideoxynucleosides"Tetrahedron Lett.. 44. 4027-4029 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "A Simple Route to L-[5,5,6,6-D_4]Lysine Starting from L-Pyroglutamic Acid"J.Deuteriurn Sci.. 12(in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba: "Origin of Diastereoselection in Hydrosilylation of Chiral N-Acyliminium Intermediates Derived from Pyroglutamic Acid"Angew.Chem.Int.Ed.. 43(in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Oba, N.Nishiyama, K.Nishiyama: "Synthesis and reactions of a novel 3,4-didehydropyroglutamate derivative"Chem.Commun.. 776-777 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] M.Oba, M.Suyama, A.Shimamura, N.Nishiyama: "Radical-based transformation of vicinal diols to olefins via thioxocarbamate derivatives : a simple approach to 2',3'-didehydro-2',3'-dideoxynucleosides"Tetrahedron Lett.. 44. 4027-4029 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] M.Oba, H.Hitokawa, K.Sodo, K.Nishiyama: "A simple route to [5,5,6,6-D_4]lysine starting from L-pyroglutamic acid"Jpn.J.Deuterium Sci.. 12(in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] M.Oba, S.Koguchi, K.Nishiyama, D.Kaneno, S.Tomoda: "Origin of Diastereoselection in Hydrosilylation of Chiral Iminium Intermediates Derived from Pyroglutamic Acid"Angew.Chem.Int.Ed.. 43(in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] M.Oba, T.Ishihara, H.Satake, K.Nishiyama: "Stereoselective synthesis of L-[2,3,4,5-D_4]ornithine"J. Labelled Compds. Radiopharm.. 45. 619-627 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Oba, H.Hitokawa, K.Sodo, K.Nishiyama: "Stereoselective deuteration of chiral glycine template"Jpn. J. Deuterium Sci.. 11. 23-28 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Oba, Y.Watanabe, K.Nishiyama: "Thermal generation and trapping of transient 9-silaanthracene derivatives"Organometallics. 21. 3667-3670 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Oba, S.Koguchi, K.Nishiyama: "A concise approach to homochiral 3,4-dihydroxyglutamic acids"Tetrahedron. 58. 9359-9363 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Oba, N.Nishiyama, K.Nishiyama: "Synthesis and reactions of a novel 3,4-didehydropyroglutamate derivative"Chem. Commun.. (in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Oba, H.Hitokawa, K.Sodo, K.Nishiyama: "A simple route to [5,5,6,6-D_4]lysine starting from L-pyroglutamic acid"Jpn. J. Deuterium Sci.. 12(in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Oba, S.Koguchi, K.Nishiyama: "A concise and diastereoselective synthesis of (2S,3S,4R)-3,4-dihydroxyglutamic acid"Tetrahedron Lett.. 42. 5901-5902 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Oba, K.Nishiyama, M.Kainosho et al.: "Synthesis of ^<13>C/D doubly labeled L-leucines: Probes for conformational analysis of the leucine side-chain"J.Org.Chem.. 66. 5919-5922 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Oba, A.Miyakawa, M.Shionoya, K.Nishiyama: "Synthesis of L-[4,5,5,5-D_4]Isoleucine: Determination of Approximate Rotamer Population About The C_β-C_γ Bond"J.Labelled Compds.Radiopharm.. 44. 141-147 (2001)

    • Related Report
      2001 Annual Research Report

URL: 

Published: 2001-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi