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Studies about protein structural alteration switching using in vivo mimic system.

Research Project

Project/Area Number 14350433
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物・生体工学
Research InstitutionJAPAN ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY

Principal Investigator

TAKAGI Masahiro  JAPAN ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY, School of Material Science, Professor, 材料科学研究科, 教授 (00183434)

Co-Investigator(Kenkyū-buntansha) SHIRAKI Kentaro  UNIVERSITY OF TSUKUBA, Institute of Applied Physics, Associate Professor, 物理工学系, 助教授 (90334797)
Project Period (FY) 2002 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥14,600,000 (Direct Cost: ¥14,600,000)
Fiscal Year 2004: ¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 2003: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2002: ¥8,800,000 (Direct Cost: ¥8,800,000)
KeywordsAmyloid / Fibril / Aggregation / Amine / Protein / アルギニン / ポリアミン / 熱成熟 / 構造転移 / 超好熱菌
Research Abstract

Protein aggregation is facilitated by a partial unfolding during thermal or oxidative stress and byalterations in primary structure caused by mutation. Protein aggregation is a major problem in biomedical and biotechnological fields. In addition, with a growing expansion of genomic data, protein purification is one of the keys to perform post-genomic researches. In our living cells, protein aggregates are highly associated with fatal diseases, such as Alzheimer's, Creutzfeldt-Jakob, Huntington's and Parkinson's diseases. In this research, we focus on amine compounds as additive for preventing heat-induced aggregation of lysozyme, as a model protein. Furthermore, we investigated the fibrillogenesis of amyloid β and β_2-microglobulin in the presence of the additives.
We investigated whether small amine compounds prevent heat-induced aggregation and inactivation of lysozyme and fibrilization of β_2-microglobulin. The following conclusions are proposed.
(i)o-Diaminocyclohexane and p-phenylenediamine prevented heat-induced aggregation andinactivation of lysozyme. The inactivation rates of lysozyme in the presence of the additives were 3-fold slower than that in the absence of additives. (ii)p-Diaminocyclohexane and spermine prevented fibrilization of β_2-microglobulin. The rate of the fibrils in the presence of the additives is 4-fold slower than that in the absence of additives. These data provided new candidates for small additives to prevent protein aggregation.

Report

(4 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (34 results)

All 2005 2004 2003 2002 Other

All Journal Article (25 results) Patent(Industrial Property Rights) (2 results) Publications (7 results)

  • [Journal Article] Amino acid esters prevent thermal in activation and aggregation of lysozyme.2005

    • Author(s)
      Kentaro Shiraki, Motonori Kudou, Ryusuke Sakamoto, Itaru Yanagihara, Masahiro Takagi.
    • Journal Title

      Biotechnology Progress. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Unfolding mechanism of a hyperthermophilic protein O6-methylguanine-DNA methyltransferase.2005

    • Author(s)
      Shingo Nishikori, Kentaro Shiraki, Shinsuke Fujiwara, Tadayuki Imanaka, Masahiro Takagi.
    • Journal Title

      Biophysical Chemistry (in press)

    • NAID

      120007139217

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Stretched-exponential analysis of heat-induced aggregation of apo-concanavalin A.2005

    • Author(s)
      Motonori Kudo, Kentaro Shiraki, Masahiro Takagi.
    • Journal Title

      Protein J. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Contribution of protein-surface ion pairs of a hyperthermophilic protein on thermal stability in high ionic strength condition.2004

    • Author(s)
      K.shiraki et al.
    • Journal Title

      J.Biosci.Bioeng. 97

      Pages: 95-95

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of heat-induced aggregates of concanavalin a using fluorescent probes.2004

    • Author(s)
      M.Kudou et al.
    • Journal Title

      Science and Technology of Advanced Materials (STAM) 5

      Pages: 339-339

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Mutational effects on O6-methylguanine-DNA methyltransferase from hyperthermophile contribution of ion-pair network to protein thermostability.2004

    • Author(s)
      S.Nishikori et al.
    • Journal Title

      J.Biochemistry (Tokyo) 135

      Pages: 525-525

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Arginine ethylester prevents thermal inactivation and aggregation of lysozyme.2004

    • Author(s)
      K.Shiraki et al.
    • Journal Title

      Eur.J.Biochem. 271

      Pages: 3242-3242

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Equilibrium and kinetic stability of a hyperthermophilic protein, O6-methylguanine-DNA methyltransferase under various extreme conditions.2004

    • Author(s)
      S.Nishikori et al.
    • Journal Title

      J.Biochemistry (Tokyo) 136

      Pages: 503-503

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Contribution of protein-surface ion pairs of a hyperthermophilic protein on thermal stability in high tonic strength condition.2004

    • Author(s)
      Kentaro Shiraki, Shingo Nishikori, Shinsuke Fujiwara, Tadayuki Imanaka, Masahiro Takagi.
    • Journal Title

      J.Biosci.Bioeng. 97

      Pages: 75-77

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of heat-induced aggregates of concanavalin a using fluorescent probes.2004

    • Author(s)
      Motonori Kudou, Kentaro Shiraki, Masahiro Takagi.
    • Journal Title

      Science and Technology of Advanced Materials (STAM) 5

      Pages: 339-341

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Mutational effects On O6-methylguanine-DNA methyltransferase from hyperthermophile : contribution of ion-pair network to protein thermostability.2004

    • Author(s)
      Shingo Nishikori, Kentaro Shiraki, Kiyonobu Yokota, Naoshikge Izumikawa, Shinsuke Fujiwara, Hiroshi Hashimto, Tadayuki Imanaka, Masahiro Takagi.
    • Journal Title

      J.Biochem.(Tokyo) 135

      Pages: 525-532

    • NAID

      10016199524

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Biophysical analysis of heat-induced structural maturation of glutamate dehydrogenase from a hyperthermophilic archaeon.2004

    • Author(s)
      Naoshige Izumikawa, Kentaro Shiraki, Shinsuke Fujiwara, Tadayuki Imanaka, Masahiro Takagi.
    • Journal Title

      J.Biosci.Bioeng. 97

      Pages: 305-309

    • NAID

      110002665303

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Arginine ethylester prevents thermal inactivation and aggregation of lysozyme.2004

    • Author(s)
      Kentaro Shiraki, Motonori Kudou, Shingo Nishikori, Harue Kitagawa, Tadayuki Imanaka, Masahiro Takagi.
    • Journal Title

      Eur.J.Biochem. 271

      Pages: 3242-3247

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Equilibrium and kinetic stability of a hyperthermophilic protein, O6-methylguanine-DNA methyltransferase in various extreme conditions.2004

    • Author(s)
      Shingo Nishikori, Kentaro Shiraki, Shinsuke Fujiwara, Tadayuki Imanaka, Masahiro Takagi
    • Journal Title

      J.Biochem.(Tokyo) 136

      Pages: 503-508

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Contribution of protein-surface ion pairs of a hyperthermophilic protein on thermal stability in high ionic strength condition.2004

    • Author(s)
      K.Shiraki et al.
    • Journal Title

      J.Biosci.Bioeng. 97

      Pages: 95-95

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Characterization of heat-induced aggregates of concanavalin a using fluorescent probes.2004

    • Author(s)
      M.Kudou et al.
    • Journal Title

      Science and Technology of Advanced Materials(STAM) 5

      Pages: 339-339

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Mutational effects on 06-methylguanine-DNA methyltransferase from hyperthermophile contribution of ion-pair network to protein thermostability.2004

    • Author(s)
      S.Nishikori et al.
    • Journal Title

      J.Biochemistry(Tokyo) 135

      Pages: 525-525

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Equilibrium and kinetic stability of a hyperthermophilic protein, 06-methylguanine-DNA methyltransferase in various extreme conditions.2004

    • Author(s)
      S.Nishikori et al.
    • Journal Title

      J.Biochemistry(Tokyo) 136

      Pages: 503-503

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Dissolution of protein aggregation by small amine compounds2003

    • Author(s)
      Kentaro Shiraki, Motonori Kudou, Yoshinobu Aso, Masahiro Takagi.
    • Journal Title

      Science and Technology of Advanced Materials (STAM) 4

      Pages: 55-59

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Surface histidine residue of archaeal hi stone affects DNA compaction and thermostability.2003

    • Author(s)
      Hiroki Higashibata, Masood Siddiqui, Masahiro Takagi, Tadayuki Imanaka, Shinsuke Fujiwara
    • Journal Title

      FEMS Microbiology Letters 224

      Pages: 17-22

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Genetic, enzymatic, and structural analyses of phenylalanyl-tRNA synthetase from Thermococcus kodakaraensis KOD1.2003

    • Author(s)
      Kentaro Shiraki, Masao Tsuji, Yoshiteru Hashimoto, Kenzo Fujimoto, Shinsuke Fujiwara, Masahiro Takai, Tadayuki Imanaka.
    • Journal Title

      J.Biochemistry (Tokyo) 134

      Pages: 567-574

    • NAID

      10012058479

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Prevention of thermal in activation and aggregation of lysozyme by polyamines.2003

    • Author(s)
      Motonori Kudou, Kentaro Shiraki, Shinsuke Fujiwara, Tadayuki Imanaka, Masahiro Taka i.
    • Journal Title

      Eur.J.Biochem. 270

      Pages: 4547-4554

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Biophysical effect of amino acids on the prevention of protein aggregation.2002

    • Author(s)
      Kentaro Shiraki, Motonori Kudou, Shinsuke Fujiwara, Tadayuki Imanaka, Masahiro Takagi.
    • Journal Title

      J.Biochemistry (Tokyo) 132

      Pages: 591-595

    • NAID

      10010652270

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Construction and high cytoplasmic expression of a Tumoricidal single-chain antibody against hepatocellular carcinoma.2002

    • Author(s)
      Duanpen Sandee, Sumalee Tungpradabkul, Manae Tsukio, Tadayuki Imanaka, Masahiro Takagi.
    • Journal Title

      BMC Biotechnol.Sep 12 2(1)

      Pages: 16-16

    • NAID

      120001746772

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Screening for stable mutants with amino-acid pairs substituted for the disulfide bond between residues 14 and 38 of bovine pancreatic trypsin inhibitor (BPTI).2002

    • Author(s)
      Yoshihisa Hagihara, Kentaro Shiraki, Tsutomu Nakamura, Koichi Uegaki, Masahiro Takagi, Tadayuki Imanaka, Noboru Yumoto
    • Journal Title

      J.Biol.Chem. 277

      Pages: 51043-51048

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 変性蛋白質の巻き戻し方法2003

    • Inventor(s)
      坂本 龍祐, 白木 賢太郎, 高木 昌宏
    • Industrial Property Rights Holder
      発明者
    • Industrial Property Number
      2003-370290
    • Filing Date
      2003-10-30
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 変性蛋白質の巻き戻し方法2003

    • Inventor(s)
      坂本龍祐, 白木賢太郎, 高木昌宏
    • Industrial Property Rights Holder
      発明者
    • Industrial Property Number
      2003-370290
    • Filing Date
      2003-10-30
    • Related Report
      2004 Annual Research Report
  • [Publications] Kentaro Shiraki, Motonori Kudou, Yaoshinobu Aso Masahiro Takagi.: "Dissolution of protein aggregation by small amine compounds."Science and Technology of Advanced Materials (STAM). (In press). (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Motonori Kudou, Kentaro Shiraki, Shinsuke Fujiwara, Tadayuki Imanaka, Masahiro Takagi: "Prevention of thermal inactivation and aggregation of lysozyme by polyamines."Eur.J.Biochem.. 270. 4547-4554 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kentaro Shiraki, Shingo Nishikori, Shinsuke Fujiwara, Tadayuki Imanaka, Masahiro Takagi.: "Contribution of protein-surface ion pairs of a hyperthermophilic protein on thermal stability in high ionic strength condition."J.Biosci.Bioeng.. 97. 75-77 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Motonori Kudou, Kentaro Shiraki, Masahiro Takagi.: "Characterization of heat-induced aggregates of concanavalin a using fluorescent probes."Science and Technology of Advanced Materials (STAM). 5(In press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kentaro Shiraki, Motonori Kudou, Shinsuke Fujiwara, Tadayuki Imanaka, Masahiro Takagi: "Biophysical effect of amino acids on the prevention of protein aggregation"J. Biochemistry (Tokyo). 132. 591-595 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kentaro Shiraki, Motonori Kudou, Yaoshinobu Aso, Masahiro Takagi: "Dissolution of protein aggregation by small amine compounds, in press (2003)"Science and Technology of Advanced Materials (STAM). (In press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 白木賢太郎, 高木昌宏: "遺伝子ドグマからタンパク質ドグマへ(タシパク質フォールディング研究の展開) 巻 (2002)"現代化学. 375. 14-20 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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