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The study of systematic method in identifying various populatins from the forensic specimens using polymorphic DNA markers.

Research Project

Project/Area Number 14570384
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Legal medicine
Research InstitutionShinshu University

Principal Investigator

OTA Masao  Shinshu University School of Medicine, Department of Legal Medicine, Lecturer, 医学部, 講師 (50115333)

Co-Investigator(Kenkyū-buntansha) ASAMURA Hideki  Shinshu University School of Medicine, Department of Legal Medicine, Assistant Professor, 医学部, 助手 (80324250)
TAKAYANAGI Kayoko  Shinshu University School of Medicine, Department of Legal Medicine, Assistant Professor, 医学部, 助手 (60313847)
FUKUSHIMA Hirofumi  Shinshu University School of Medicine, Department of Legal Medicine, Professor, 医学部, 教授 (70135218)
INOKO Hidetoshi  Tokai University of School of Medicine, Department of Genetic Information, Division of Molecular Life Science, Professor, 医学部, 教授 (10101932)
Project Period (FY) 2002 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2003: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2002: ¥2,400,000 (Direct Cost: ¥2,400,000)
KeywordsHLA gene polymorphism / HLA haplotype / PCR-SPP method / Forensic specimens / Japanese population / Distribution of HLA gene frequency / Personal identification / Microsatellite
Research Abstract

The systematic procedure for identifying the forensic specimens, whether they are originated from Japanese population or other ethnic populations, is helpful for resolving a criminal investigation happened in Japan. First, we studied the usefulness of HLA DNA polymorphisms to differentiate Japanese population from the numerous populations in the word. We listed characteristic and rare or absent HLA genes and haplotypes in Japanese population from the 11^<th> International HLA data, and made available tables to compare Japanese and other ethnic groups. Second, we validated the HLA-SPP(sequence specific primer and probe) typing method for forensic specimens, especially from extremely small amount of DNA extracted such as a single hair, a piece of nail, aged blood stains, fromalin-fixed and paraffin-embedded tissues. This PCR-SPP method has made it possible to type HLA alleles even a very small amount of DNA. Third, we demonstrated a power of discrimination on microsatellite markers located in the HLA region from the results that allele types of microsatellite were different at several loci between the same HTCs (homozygous typing cell), and also different among persons with the same frequent haplotype (A : 2402-C^* 1202-B^*5201-DRB1^*1502-DQB1^*0601) in Japanese population. Theses results supported HLA DNA polymorphisms as a useful tool to identify the forensic specimens originated from Japanese or not.

Report

(3 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • Research Products

    (33 results)

All Other

All Publications (33 results)

  • [Publications] 浅村英樹 他4名: "微量骨組織からのDNA抽出"DNA多型. 11. 143-146 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tsukada K 他5名: "Multiplex PCR using newly designed primers for very short fragments of TH01, TPOX, CSF1PO and rWA loci"Progress in Forensic Genetics. 9. 755-757 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takayanagi K 他5名: "Investigation of DNA extraction from hair shafts."Progress in Forensic Genetics. 9. 759-764 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Dunn DS, Ota M et al.他2名: "Association of MHC dimorphic Alu insertions with HLA class I and MIC genes in Japanese HLA-B48 haplotypes"Tissue Antigens. 62. 259-262 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okamoto K 他9名: "Identification of I Kappa BL as the second major histocompatibility complex-linked susceptibility locus for Rheumatoid Arthritis"Am J Ham Genet. 72. 303-312 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Mizuki N 他12名: "Analysis of microsatellite polymorphism around the HLA-B locus in Japanese patients with Behcet's disease."Tissue Antigens. 60. 396-399 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Saito S, Ota M, Komatsu Y, Ota S, Aoki S, Koike K, Tokunaga I, Tsuno T, Tsuruta G, Kubo T, Fukushima H.: "Serologic analysis of three cases of neonatal alloimmune thrombocytopenia associated with HLA anti bodies."Trasfusion. 43. 908-917 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Dunn DS, Ota M, Inoko H, Kulski JK.: "Association of MHC dimorphic Alu insertions with HLA class I and MIC genes in Japanese HLA-B48 haplotypes."Tissue Antigens. 62. 259-262 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Asamura H, Takayanagi K, Tukada K, Ota M, Fukushima H: "Comparison of DNA extraction methods from a small amount of bone."DNA polymorphism (Japanese). 11. 143-146 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takayanagi K, Asamura H, Tsukada K, Ota M, Fukushima H: "Hair analysis for human and species identification."DNA polymorphism (Japanese). 11. 143-146 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takayanagi K, Asamura H, Tsukada K, Ota M, Saito S, Fukushima H: "Investigation of DNA extraction from hair shafts."Progress in Forensic Genetics. 9. 759-764 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tsukada K, Takayanagi K, Asamura H, Ota M, Saito S, Fukushima H: "Multiplex PCR using newly designed primers for very short fragments of TH01, TPOX, CSF1PO, and vWA loci."Progress in Forensic Genetics. 9. 755-757 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshizawa K, Ota M, Saito S, Maruyama A, Tamura T, Rokuhara A, Orii K, Ichijo A, Matsumoto A, Tanaka E, Kiyosawa K.: "Long-term follow-up hepatitis C virus infection : HLA class II loci influences the natural history of the disease."Tissue Antigens. 61. 159-165 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Okamoto K, Makino S, Yoshikawa Y, Takaki A, Nagatsuka Y, Ota M, Tamiya G, Kimura A, Bahram S, Inoko H.: "Identification of IkappaBL as the Second Major Histocompatibility Complex-Linked Susceptibility Locus for Rheumatoid Arthritis."Am J Hum Genet. 72. 303-312 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Asamura H, Takayanagi K, Tukada K, Ota M, Fukushima H: "DNA analysis of the two pieces of bone founded in the mountains."DNA polymorphism (Japanese). 10. 271-273 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tsukada K, Takayanagi K, Asamura H, Ota M, Saito H, Fukushima H: "DNA typing of degraded blood stained samples using STR multiplex system."DNA polymorphism (Japanese). 10. 210-212 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Akamatu T, Sano K, Tsugane K, Ota M: "Identification of mixed-up tissue specimens : immunohistochemical staining of blood group substances and application of short tandem repeat of genomic DNA"Shokaki Naishikyo (Japanese). 14. 385-389 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Mizuki N, Yabuki K, Ota M, Katsuyama Y, Ando H, Nomura E, Funakoshi K, Davatchi F, Chams H, Nikbin B, Ghaderi AA, Ohno S, Inoko H.: "Analysis of microsatellite polymorphism around the HLA-B locus in Iranian patients with Behcet's disease."Tissue Antigens. 60. 396-399 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tsukada K, Takayanagi K, Asamura H, Ota M, Fukushima H.: "Multiplex short tandem repeat typing in degraded samples using newly designed primers for the TH01,TPOX, CSF1PO, and vWA loci."Legal Medicine. 4. 239-245 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Droma Y, Hanaoka M, Ota M, katsuyama Y, Koizumi T, Fujimoto K, Kobayashi T, Kubo K.: "Positive association of the endothelial nitric oxide synthase gene polymorphisms with high-altitude pulmonary edema."Circulation. 106. 826-830 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Saito S, Ota S, Seshimo H, Yamazaki Y, Nomura S, Ito T, Miki J, Ota M, Fukushima H, Maeda H.: "Platelet transfusion refractoriness caused by a mismatch in HLA-C antigens."Transfusion. 42. 302-308 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 浅村英樹 他4名: "微量骨組織からのDNA抽出"DNA多型. 11. 143-146 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Tsukada K, 他5名: "Multiplex PCR using newly designed primers for very short fragments of TH01, TPOX, CSF1PO and rWA loci"Progress in Forensic Genetics. 9. 755-757 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Takayanagi K, 他5名: "Investigation of DNA extraction from hair shafts"Progress in Forensic Genetics. 9. 759-764 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Dunn DS, Ota M, 他2名: "Association of MHC dimorphic Alu insertions with HLA class I and MIC genes in Japanese HLA-B48 haplotypes"Tissue Antigens. 62. 259-262 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Okamoto K, 他9名: "Identification of I kappa BL as the second major histocompatibility complex-linked susceptibility locus for rheumatoid arthritis"Am J Hum Genet. 72. 303-312 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Mizuki N, 他12名: "Analysis of microsatellite polymorphism around the HLA-B locus in Iranian patients with Behcet's disease"Tissue Antigens. 60. 396-399 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 赤松泰次 他3名: "生体標本の個人識別法-検体取り違えの事故防止策-"消化器内視鏡. 14・3. 385-389 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kawa S, Ota M, 他10名: "HLADRBl*0405-DQBl*0401 haplotype is associated with autoimmune pancreatitis in the Japanese population"Gastroenterology. 122. 1264-1269 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Tsjimura A, Ota M 他8名: "Susceptibility gene for non-obstractive azoospermia located near HLA-DR and-DQ loci m the HLA class II region"Hum Genet. 110. 192-197 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Asamura A, Ota M 他4名: "Molecular genetic analysis of the Am phenotype of the ABO blood group system"Vox Sanguinis. 83. 263-267 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Tsukada K, Ota M 他3名: "Multiplex short tandemrepeat typing m degraded samples using nearly designed primers for the THSl, TPOX, CSFIPO, and vWA lci"Legal Medicine. 4. 239-245 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Mizuki N, Ota M, 他11名: "Analysis of microsatellite polymorphism around the HLA-B loacs m Iranian patients with Be hcet's disease"Tissue Antigens. 60. 396-399 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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