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Synthesis of functional probes toward elucidation of the function of respiratory enzymes of Caenorhabditis elegans.

Research Project

Project/Area Number 15380083
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioproduction chemistry/Bioorganic chemistry
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

MIYOSHI Hideto  Kyoto University, Agriculture, Associate Professor, 農学研究科, 助教授 (20190829)

Co-Investigator(Kenkyū-buntansha) KITA Kiyoshi  University of Tokyo, Medicine, Professor, 大学院・医学系研究科, 教授 (90134444)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥13,700,000 (Direct Cost: ¥13,700,000)
Fiscal Year 2004: ¥5,300,000 (Direct Cost: ¥5,300,000)
Fiscal Year 2003: ¥8,400,000 (Direct Cost: ¥8,400,000)
KeywordsRespiratory Inhibitor / Respiratory Enzymes / Mitochondria / アセトゲニン / 構造活性相関
Research Abstract

To identify the binding subunit of fenpyroximate, a very potent inhibitor of bovine heart mitochondrial complex I, we synthesized ^3H-labeled photolabile fenpyroximate ([^3H](trifluoromethyl)-phenyldiazirinyl fenpyroximate, TDF). TDF appeared to elicit very potent inhibition of bovine heart mitochondrial complex I being nearly equivalent to that of fenpyroximate.
On the basis of photoaffinity studies with bovine heart complex I in collaboration with Dr.Takao Yagi (The Scripps Research Institute, USA), the binding site of TDF was shown to be subunit ND5 which is thought to exist in membrane arm of the enzyme. Since antibody to the C-terminal region of the ND5 subunit only weakly recognized the subunit, we identified the ND5 by 2D-electrophoresis (SDS-PAGE). Our result is the first study wherein the subunit located in membrane arm was identified as the inhibitor binding subunit. Our study strongly suggests that subunit(s) located in membrane arm may be involved in the proton-pumping activity of complex I.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (28 results)

All 2005 2004 2003 Other

All Journal Article (24 results) Publications (4 results)

  • [Journal Article] Synthesis and inhibition mechanism of Dlac-acetogenins : a novel type of inhibitor of bovine heart mitochondrial complex I.2005

    • Author(s)
      Ichimaru, N., Murai, M., Abe, M., Hamada, T., Yamada, Y., Makino, S., Nishioka, T., Makabe, H., Makino, A., Kobayashi, T., Miyoshi, H.
    • Journal Title

      Biochemistry 44

      Pages: 816-825

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis of two possible diastereomers of reticulatain-I.2004

    • Author(s)
      Makabe, H. et al.
    • Journal Title

      Tetrahedron Lett. 45

      Pages: 973-977

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Rhodoquinone Reaction Site of Mitochondrial Complex I in Parasitic Helminth.2004

    • Author(s)
      Yamashita, T., Ino, T., Miyoshi, H., Sakamoto, K., Osanai, A., Nakamaru-Ogiso, E., Kita, K.
    • Journal Title

      Ascaris suum.Biochim.Biophys.Acta (Bioenergetics) 1608

      Pages: 97-103

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis of two possible diastereomers of reticulatain-12004

    • Author(s)
      Makabe, H., Miyawaki, A., Takahashi, R., Hattori, Y., Konno, H., Abe, M., Miyoshi, H.
    • Journal Title

      Tetrahedron Lett. 45

      Pages: 973-977

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Occurrence of a bound ubiquinone and its function in Escherichia coli membrane-bound quinoprotein glucose dehydrogenase.2004

    • Author(s)
      Elias, M.D., Nakamura, S., Migita, C.T., Miyoshi, H., Toyama, H., Matsushita, K., Adachi, O., Yamada, M.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 3078-3083

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis and mitochondrial complex I inhibition of dihydroxy-cohibin A, non-THF annonaceous acetogenin analogue2004

    • Author(s)
      Konno, H., Hiura N., Makabe, H., Abe, M., Miyoshi, H.
    • Journal Title

      Bioorg.Med.Chem.Lett. 14

      Pages: 629-632

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Essential structural features of acetogenins : role of hydroxy groups adjacent to the bis-THF rings.2004

    • Author(s)
      Abe, M., Kenmochi, A., Ichimaru, N., Hamada, T., Nishioka, T., Miyoshi, H.
    • Journal Title

      Bioorg.Med.Chem.Lett. 14

      Pages: 779-782

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis and Inhibitory Action of Novel Acetogenin Mimics with Bovine Heart Mitochondrial Complex I.2004

    • Author(s)
      Hamada, T., Ichimaru, N., Abe, M., Fujita, D., Kenmochi, A., Nishioka, T., Zwicker, K., Brandt, U., Miyoshi, H.
    • Journal Title

      Biochemistry 43

      Pages: 3651-3658

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Direct evidence for the interaction of stigmatellin with a protonated acidic group in the bc_1 complex from S.cerevisiae as monitored by FTIR difference spectroscopy and ^<13>C specific labeling.2004

    • Author(s)
      Ritter, M., Palsdottir, H., Abe, M., Mantele, W., Hunte, C., Miyoshi, H., Hellwig, P.
    • Journal Title

      Biochemistry 43

      Pages: 8439-8446

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Total synthesis of cis-solamin and its inhibitory action with bovine heart mitochondrial complex I.2004

    • Author(s)
      Makabe, H., Hattori, Y., Kimura, Y., Konno, H., Abe, M., Miyoshi, H., Tanaka, A., Oritani, T.
    • Journal Title

      Tetrahedron 60

      Pages: 10651-10657

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis of two possible diasteromers of reticulatain-I.2004

    • Author(s)
      Makabe, H. et al.
    • Journal Title

      Tetrahedron Lett. 45

      Pages: 973-977

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The ND5 subunit was labeled by a photoaffinity analogue of fenpyroximate in bovine mitochondria complex I.2003

    • Author(s)
      Nakamura-Ogiso, E. et al.
    • Journal Title

      Biochemistry 42

      Pages: 746-754

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Architecture of succinate dehydrogenase and reactive oxygen species generation2003

    • Author(s)
      Yankovskaya, V. et al.
    • Journal Title

      Science 299

      Pages: 700-704

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Atpenins, potent and specific inhibitors of mitochondrial complex II (succinate-ubiquinone oxidoredutase).2003

    • Author(s)
      Miyadera, H. et al.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 100

      Pages: 473-477

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Asymmetric binding of the high-affinity Q_H ubisemiquinone in quinol oxidase (bo_3) from Escherichia coli by mulifrequency electron paramagnetic resonance spectroscopy.2003

    • Author(s)
      Grimaldi S. et al.
    • Journal Title

      Biochemistry 42

      Pages: 5632-5639

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis and Inhibitory Action of Novel Acetogenin Mimics with Bovine Heart Mitochondrial Complex I.2003

    • Author(s)
      Hamada, T. et al.
    • Journal Title

      Biochemistry 43

      Pages: 3651-3658

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The ND5 subunit was labeled by a photoaffinity analogue of fenpyroximate in bovine mitochondrial complex I.2003

    • Author(s)
      Nakamaru-Ogiso, E., Sakamoto, K., Matsuno-Yagi, A., Miyoshi, H., Yagi, T.
    • Journal Title

      Biochemistry 42

      Pages: 746-754

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Architecture of succinate dehydrogenase and reactive oxygen species generation2003

    • Author(s)
      Yankovskaya, V., Horsefield, R., Tornroth, S., Luna-Chavez, C., Miyoshi, H., Leger, C., Byrne, B., Cecchini, G., Iwata, S.
    • Journal Title

      Science 299

      Pages: 700-704

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Atpenins, potent and specific inhibitors of mitochondrial complex II (succinate-ubiquinone oxidoreductase).2003

    • Author(s)
      Miyadera, H., Shiomi, K., Ui, H., Yamaguchi Y., Masuma, R., Tomoda, H., Miyoshi, H., Osanai, A., Kita, K., Ohmura, S.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 100

      Pages: 473-477

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Asymmetric binding of the high-affinity Q_H ubisemiquinone in quinol oxidase (bo_3) from Escherichia coli studied by multifrequency electron paramagnetic resonance spectroscopy2003

    • Author(s)
      Grimaldi S., Ostermann, T., Weiden, N., Mogi, T., Miyoshi, H., Lidwig, B., Michel, H., Prinsner, T.F., MacMillan, F.
    • Journal Title

      Biochemistry 42

      Pages: 5632-5639

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Complex II from phototrophic purple bacterium Rhodoferax fermentans displays rhodoquinol-fumarate reductase activity.2003

    • Author(s)
      Miyadera, H., Hiraishi, A., Miyoshi, H., Sakamoto, K., Mineki, R., Murayama, K., Nagashima, K., Matsuura, K., Kojima, S., Kita, K.
    • Journal Title

      Eur.J.Biochem. 270

      Pages: 1863-1874

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Isolation and characterization of the stage-specific cytochrome b small subunit (CybS) of Ascaris suum complex II from the aerobic respiratory chain of larval mitochondria.2003

    • Author(s)
      Amino, H., Osanai, A., Miyadera, H., Shinjyo, N., Tomitsuka, E., Taka, H.Mineki, R.Murayama, K.Takamiya, S.Aoki, T.Miyoshi, H., Sakamoto, K Kojima, S., Kita, K.
    • Journal Title

      Mol.Biochem.Parasitol. 128

      Pages: 175-186

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis and Inhibitory Activity of Ubiquinone-Acetogenin Hybrid Inhibitor with Bovine Mitochondrial Complex I.2003

    • Author(s)
      Yabunaka, H., Abe, M., Kenmochi, A., Hamada, T., Nishioka T., Miyoshi, H.
    • Journal Title

      Bioorg.Med.Chem.Lett. 13

      Pages: 2385-2388

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of inhibitor binding sites of mitochondrial complex I using fluorescent inhibitor2003

    • Author(s)
      Ino, T., Nishioka, T., Miyoshi, H.
    • Journal Title

      Biochim.Biophys.Acta (Bioenergetics) 1605

      Pages: 15-20

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] 山下哲夫: "Rhodoquinone reaction site of mitochondrial complex I in parasitic helminth, Ascaris sum"Biochim.Biophys.Acta. 1608. 97-103 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 真壁秀文: "Synthesis of two possible diastereomers of reticulatiain-1"Tetrahedron Lett.. 45. 973-977 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] M.D.Elias: "Occurrence of a bound ubiquinone and its function in Escherichia coli membrane-bound quinoprotein glucose dehydrogenase"J.Biol.Chem.. 279. 3078-3083 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 安部真人: "Essential structural features of acetogenins : role of hydroxy groups adjacent to the bis-THF ring"Bioorg.Med.Chem.Lett.. 14. 779-782 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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