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Comprehensive analysis on the genes involved in signals for seed formation and seed development

Research Project

Project/Area Number 15570042
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 植物生理・分子
Research InstitutionTokyo University of Science

Principal Investigator

SHIMADA Hiroaki  Tokyo University of Science, Department of Biological Science and Technology, Professor, 基礎工学部, 教授 (70281748)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2004: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 2003: ¥2,300,000 (Direct Cost: ¥2,300,000)
KeywordsRice / protein kinase / seed / microarray / endosperm / seed development / クラスター解析
Research Abstract

Profiles of expression levels of genes in developing seeds were comprehensively analyzed. The antisense SPK transformant produces watery seeds as the result of abnormal endosperm formation because of lacking accumulation of storage substances. Using immature seeds of this transformant, we analyzed the genes working in the initial stage of seed development. The microarray experiment indicated that 125 genes significantly altered their expression levels in the transformant Among them, several genes showing strong fluctuation were further analyzed to confirm alteration of their expression levels by RT-PCR in detail. In the meantime, microarray analysis was also performed on a mutant which showed the abnormal morphology on the spikes. A large number of gene expression was found to be fluctuated, including genes for SUMO1,F-box proteins, CEN-P proteins. We constructed an antisense transformant on SUMO1 gene and observed its morphology which appeared on the transformant. The transformant resulted in a severe phenotype on the spikelets, suggesting that SUMO is very important on morphogenesis of the spikes.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (26 results)

All 2005 2004 2003 Other

All Journal Article (22 results) Patent(Industrial Property Rights) (4 results)

  • [Journal Article] shk1-D, a dwarf Arabidopsis mutant caused by activation of CYP72CL gene, has altered brassinosteroid levels2005

    • Author(s)
      Naoki Takahashi, Miki Nakazawa, Akie Ishikawa, Kumoko Suzuki, Mika Kawashima, Takanari Ichikawa, Takao Yokota, Hiroaki Shimada, Minami Matsui
    • Journal Title

      Plant Journal 42

      Pages: 13-22

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular characterization of ONAC300,a novel NAC gene specifically expressed at early stage of various developing tissue of rice.2005

    • Author(s)
      Hiroaki Kusano, Takayuki Asano, Hiroaki Shimada, Koh-ichi Kadowaki
    • Journal Title

      Molecular Genentics and Genomics 272

      Pages: 616-626

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Induction of callus hyper-tolerant fern, Athytium yokoscense, and evaluation of the cadomium tolerance and acuumulation capacity.2005

    • Author(s)
      Toshihiro Yoshihara, Kyoko Tsunokawa, Yoshiyuki Miyano, Yuki Arashima, Hirotaka Hodoshima, Kazuhiro Shoji, Hiroaki Shimada, Fumiyuki Goto
    • Journal Title

      Plant Cell Report 23

      Pages: 579-585

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] shk1-D, a dwarf Arabidopsis mutant caused by activation of CYP72C1 gene, has altered brassinosteroid levels2005

    • Author(s)
      Naoki Takahashi, Miki Nakazawa, Akie Ishikawa, Kumoko Suzuki, Mika Kawashima, Takanari Ichikawa, Takao Yokota, Hiroaki Shimada, Minami Matsui
    • Journal Title

      Plant Journal 42

      Pages: 13-22

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stage of various developing tissue of rice.2005

    • Author(s)
      Hiroaki Kusano, Takayuki Asano, Hiroaki Shimada, Koh-ichi Kadowaki
    • Journal Title

      Molecular Genentics and Genomics 272

      Pages: 616-626

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Induction of callus hyper-tolerant fern, Athytium yokoscense, and evaluation of the cadomium tolerance and acuumulation capacity.2005

    • Author(s)
      Toshihiro Yoshihara, Kyoko Tsunokawa, Yoshiyuki Miyano, Yuki Arashima, Hirotaka Hodoshima, Kazuhiro Shoji, Hiroaki Shimada, Fumiyuki Goto
    • Journal Title

      Plant Cell Report. 23

      Pages: 579-585

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Induction of callus from a metal hypertolerant fern, Athyrium yokoscense, and evaluation of its cadmium tolerance and accumulation capacity2005

    • Author(s)
      T.Yoshihara et al.
    • Journal Title

      Plant Cell Rep. 23

      Pages: 579-585

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A rice antisense SPK transformant that lacks the accumulation of seed storage substances shows no correlation between sucrose concentration in phloem sap and demand for carbon sources in the sink organs.2004

    • Author(s)
      Hiroaki Shimada, Hiroaki Koishihara, Yayoi Saito, Yuki Arashima, Tomoyuki Furukawa, Hiroaki Hayashi
    • Journal Title

      Plant Cell Physiolgy. 45

      Pages: 1105-1109

    • NAID

      10013525967

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome : a comparative analysis pf four monocot chloroplast genomes.2004

    • Author(s)
      Takayuki Asano, Takahiko Tsuzuki, Sakiko Takahashi, Hiroaki Shimada, Koh-ichi Kadowaki
    • Journal Title

      DNA Research. 11

      Pages: 93-99

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] ydk1-D, an auxin-repsponsive GH3 mutant that is involved in hypocotyl and root elongation.2004

    • Author(s)
      Tomoyuki Takase, Miki Nakazawa, Akie Ishikawa, Mika Kawashima, Takanari Ichikawa, Naoki Takahashi, Hiroaki Shimada, Katsuki Manabe, Minami Matsui
    • Journal Title

      Plant Journal. 37

      Pages: 471-483

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Expression and interaction analysis of Arabidopsis Skp1-related genes.2004

    • Author(s)
      Naoki Takahashi, Hirofumi Kuroda, Takashi Kuromori, Takashi Hirayama, Motoaki_Seki, _Kazuo Shinozaki, Hiroaki Shimada, Minami Matsui
    • Journal Title

      Plant Cell Physiology. 45

      Pages: 83-91

    • NAID

      10012004653

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Expression and interaction analysis of Arabidopsis Skp1-related genes.2004

    • Author(s)
      Naoki Takahashi, Hirofumi Kuroda, Takashi Kuromori, Takashi Hirayama, Motoaki Seki, Kazuo Shinozaki, Hiroaki Shimada, Minami Matsui
    • Journal Title

      Plant Cell Physiology. 45

      Pages: 83-91

    • NAID

      10012004653

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] ydk1-D, an auxin-responsive GH3 mutant that is involved in hypocotyl and root elongation2004

    • Author(s)
      T.Takase et al.
    • Journal Title

      The Plant J. 37

      Pages: 471-483

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Expression and interaction analysis of Arabidopsis Skp1-related genes2004

    • Author(s)
      N.Takahashi et al.
    • Journal Title

      Plant Cell Physiol. 45

      Pages: 83-91

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome2004

    • Author(s)
      T.Asano et al.
    • Journal Title

      DNA Res. 11

      Pages: 93-99

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A rice antisense SPK transformant that lacks the accumulation of seed storage substances shows no correlation between sucrose concentration in phloem sap and demand for carbon sources in the sink organs2004

    • Author(s)
      H.Shimada et al.
    • Journal Title

      Plant Cell Physiol. 45

      Pages: 1105-1109

    • NAID

      10013525967

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 小型密封容器(クールミル)を用いたイネ細胞の効率的破砕法2003

    • Author(s)
      小泉一愉, 今村智弘, 高野裕二, 松江登久, 島田浩章
    • Journal Title

      育種学研究 5

      Pages: 53-57

    • NAID

      110001812611

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] 小型密封容器(クールミル)を用いたイネ細胞の効率的破砕法2003

    • Author(s)
      小泉一愉, 今村智弘, 高野裕二, 松江登久, 島田浩幸
    • Journal Title

      育種学研究 5

      Pages: 53-57

    • NAID

      110001812611

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Very close relationship of the chloroplast genomes among Saccharum species

    • Author(s)
      Sakiko Takahashi, Tsutomu Furukawa, Takayuki Asano, Yoshihumi Terajima, Hiroaki Shimada, Akira Sugimoto, Koh-ichi Kadowaki
    • Journal Title

      Theoretical and Applied Genetics (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Enhancement of Poly (3-hydroxybutyrate-co-3-hydroxyvalerate) Production in the transgenic Arabidopsis thaliana by the in vitro evolved highly active mutants of polyhydroxyalkanoate (PHA) synthase from Aeromonas caviae.

    • Author(s)
      Ken'ichiro Matsumoto, Rina Nagao, Takaaki Murata, Yuko Arai, Tomoyasu Kichise, Hideo Nakashita, Seiichi Taguchi, Hiroaki Shimada, Yoshiharu Doi
    • Journal Title

      Biomacromolecules. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Very close relationship of the chloroplast genomes among Saccharum species

    • Author(s)
      Sakiko Takahashi, Tsutomu Furukawa, Takayuki Asano, Yoshihumi Terajima, Hiroaki Shimada, Akira Sugimoto, Koh-ichi Kadowaki
    • Journal Title

      Theoretical and Applied Genetics (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Enhancement of Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) Production in the transgenic Arabidopsis thaliana by the in vitro evolved highly active mutants of polyhydroxyalkanoate(PHA) synthase from Aeromonas caviae.

    • Author(s)
      Ken'ichiro Matsumoto, Rina Nagao, Takaaki Murata, Yuko Arai, Tomoyasu Kichise, Hideo Nakashita, Seiichi Taguchi, Hiroaki Shimada, Yoshiharu Doi
    • Journal Title

      Biomacromolecules. (印刷中)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 新規な抗菌性ペプチド、それを産生するための組換え体植物及び該抗菌性ペプチドの製造方法2004

    • Inventor(s)
      島田 浩章, 田口 精一, 増田 和成, 渡辺 昭
    • Industrial Property Rights Holder
      荏原製作所, 東京理科大学科学技術交流センター
    • Industrial Property Number
      2004-059585
    • Filing Date
      2004-03-03
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 植物を用いた有用物質の生産方法2004

    • Inventor(s)
      増田 和成, 渡辺 昭, 島田 浩章
    • Industrial Property Rights Holder
      荏原製作所, 東京理科大学科学技術交流センター
    • Industrial Property Number
      2004-195741
    • Filing Date
      2004-07-01
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 新規な抗菌性ペプチド、それを産生するための組換え体植物及び該抗菌性ペプチドの製造方法2004

    • Inventor(s)
      増田 和成, 渡辺 昭, 島田 浩章
    • Industrial Property Rights Holder
      荏原製作所, 東京理科大学科学技術交流センター
    • Industrial Property Number
      2004-227456
    • Filing Date
      2004-08-04
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] ポリプレニル2リン酸合成酵素を発現する発現カセットで形質転換された植物2004

    • Inventor(s)
      門脇 光一, 高橋 咲子, 川向 誠, 島田 浩章
    • Industrial Property Rights Holder
      独立行政法人農業生物資源研究所, 東京理科大学科学技術交流センター, 島根大学
    • Industrial Property Number
      2004-136906
    • Filing Date
      2004-04-30
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary

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Published: 2003-04-01   Modified: 2016-04-21  

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