Establishment of new omics approach for the comprehensive analysis of the light sensing pathways
| Project/Area Number |
15H05578
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| Research Category |
Grant-in-Aid for Young Scientists (A)
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| Allocation Type | Single-year Grants |
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| Research Field |
Genome biology
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| Research Institution | Toyohashi University of Technology |
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Principal Investigator |
Hirose Yuu 豊橋技術科学大学, 工学(系)研究科(研究院), 助教 (30616230)
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| Project Period (FY) |
2015-04-01 – 2018-03-31
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| Project Status |
Completed (Fiscal Year 2017)
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| Budget Amount *help |
¥23,530,000 (Direct Cost: ¥18,100,000、Indirect Cost: ¥5,430,000)
Fiscal Year 2017: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Fiscal Year 2015: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
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| Keywords | 次世代シークエンサー / フォトーム / 光受容体 / シアノバクテリア / 藻類 / ゲノム / オプトジェネティクス / フィトクロム / 光合成 / 光応答 / 光スイッチ / トランスクリプトーム |
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| Outline of Final Research Achievements |
To understand the light-sensing network of living organisms, I developed new omics method named "Photome". This method utilizes the advantage of wide range of quantification of the next generation sequencer and the irradiation of multichromatic light with high resolution wavelength. I succeeded to establish highly efficient sample preparation method of photome and also automated pipeline for computing. This method can be applied to all living organism and will promote the progress of the wide research filed such as analysis of intrinsic light-sensing pathway or regulation of cellular response by light irradiation.
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Report
(4 results)
Research Products
(13 results)
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[Journal Article] Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering.2016
Author(s)
Hirose Y., Fujisawa T., Ohtsubo Y., Katayama M., Misawa N., Wakazuki S., Shimura Y., Nakamura Y., Kawachi M., Yoshikawa H., Eki T., and Kanesaki Y.
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Journal Title
Journal of Biotechnology
Volume: 220
Pages: 51-52
DOI
Related Report
Peer Reviewed / Int'l Joint Research
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[Journal Article] Complete genome sequencing of cyanobacterium Leptolyngbya sp. NIES-3755 Journal of Biotechnology.2016
Author(s)
Hirose Y., Fujisawa T., Ohtsubo Y., Katayama M., Misawa N., Wakazuki S., Shimura Y., Nakamura Y., Kawachi M., Yoshikawa H., Eki T., and Kanesaki Y.
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Journal Title
Genome Announcements
Volume: 4
Issue: 2
DOI
Related Report
Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools.2016
Author(s)
Hirose Y., Fujisawa T., Ohtsubo Y., Katayama M., Misawa N., Wakazuki S., Shimura Y., Nakamura Y., Kawachi M., Yoshikawa H., Eki T., and Kanesaki Y.
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Journal Title
Journal of Biotechnology
Volume: 220
Pages: 45-46
DOI
Related Report
Peer Reviewed / Int'l Joint Research
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