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Method Development with the Fragment Molecular Orbital and Density-Functional Tight-Binding Methods and Its Applications

Research Project

Project/Area Number 15H06316
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Physical chemistry
Research InstitutionKyoto University

Principal Investigator

Nishimoto Yoshio  京都大学, 福井謙一記念研究センター, 助教 (20756811)

Project Period (FY) 2015-08-28 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords計算化学 / 量子化学 / 分子動力学シミュレーション
Outline of Final Research Achievements

In this study, I developed theoretical methods using FMO-DFTB, a combination of the fragment molecular orbital (FMO) and density-functional tight-binding (DFTB) methods. The first-order derivative of the total energy was not previously analytic, so here I derived new equations and made the derivative fully analytic. In order to take solvent effects into account, I combined FMO-DFTB and the polarizable continuum model. It makes it possible to apply FMO-DFTB to proteins. In addition, an even more accurate calculation is now possible by including three body effects.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • Research Products

    (13 results)

All 2017 2016 2015

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Acknowledgement Compliant: 7 results) Presentation (4 results)

  • [Journal Article] Quantum chemical prediction of vibrational specta of large molecular systems with radical or metallic electronic structure2017

    • Author(s)
      Yoshio Nishimoto and Stephan Irle
    • Journal Title

      Chemical Physics Letters

      Volume: 667 Pages: 317-321

    • DOI

      10.1016/j.cplett.2016.11.014

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Three-Body Expansion of the Fragment Molecular Orbital Method Combined with Density-Functional Tight-Binding2017

    • Author(s)
      Yoshio Nishimoto and Dmitri G. Fedorov
    • Journal Title

      Journal of Computational Chemistry

      Volume: 146 Issue: 7 Pages: 084101-084101

    • DOI

      10.1002/jcc.24693

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Analytic hyperpolarizability and polarizability derivative with fractional occupation numbers for large extended systems2017

    • Author(s)
      Yoshio Nishimoto
    • Journal Title

      The Journal of Chemical Physics

      Volume: 146 Issue: 8 Pages: 084101-084101

    • DOI

      10.1063/1.4976551

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The fragment molecular orbital method combined with density-functional tight-binding and the polarizable continuum model2016

    • Author(s)
      Yoshio Nishimoto and Dmitri G. Fedorov
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 18 Issue: 32 Pages: 22047-22061

    • DOI

      10.1039/c6cp02186g

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Analytic second derivative of the energy for density-functional tight-binding with the fragment molecular orbital method2016

    • Author(s)
      Hiroya Nakata, Yoshio Nishimoto, and Dmitri G. Fedorov
    • Journal Title

      The Journal of Chemical Physics

      Volume: 145 Issue: 4 Pages: 044113-044113

    • DOI

      10.1063/1.4959231

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] DFTB/PCM Applied to Ground and Excited State Potential Energy Surfaces2016

    • Author(s)
      Yoshio Nishimoto
    • Journal Title

      The Journal of Physical Chemistry A

      Volume: 120 Issue: 5 Pages: 771-784

    • DOI

      10.1021/acs.jpca.5b10732

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Third-order density-functional tight-binding combined with the fragment molecular orbital method2015

    • Author(s)
      Yoshio Nishimoto, Dmitri G. Fedorov, and Stephan Irle
    • Journal Title

      Chemical Physics Letters

      Volume: 636 Pages: 90-96

    • NAID

      120005674619

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Time-dependent density-functional tight-binding method with the third-order expansion of electron density2015

    • Author(s)
      Yoshio Nishimoto
    • Journal Title

      The Journal of Chemical Physics

      Volume: 143 Issue: 9 Pages: 094108-094108

    • DOI

      10.1063/1.4929926

    • NAID

      120005678169

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Large-Scale Quantum Mechanical Molecular Dynamics Simulations Using Density-Functional Tight-Binding Combined with the Fragment Molecular Orbital Method2015

    • Author(s)
      Yoshio Nishimoto, Hiroya Nakata, Dmitri G. Fedorov, and Stephan Irle
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 6 Issue: 24 Pages: 5034-5039

    • DOI

      10.1021/acs.jpclett.5b02490

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 小数軌道占有数を用いた二次微分計算2017

    • Author(s)
      西本佳央、イレステファン
    • Organizer
      日本化学会第97春季年会
    • Place of Presentation
      慶應義塾大学(神奈川県)
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] FMO法とDFTB法とPCM法の組み合わせ(FMO-DFTB/PCM)2016

    • Author(s)
      西本佳央、フェドロフドミトリ
    • Organizer
      第10回分子科学討論会
    • Place of Presentation
      神戸ファッションマート(兵庫県)
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] 時間依存密度汎関数強束縛(TD-DFTB)法に関する理論開発2016

    • Author(s)
      西本 佳央
    • Organizer
      日本化学会 第96春季年会 (2016)
    • Place of Presentation
      同志社大学 京田辺キャンパス
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 三次の展開項を用いた時間依存密度汎関数強束縛法(TD-DFTB3)2015

    • Author(s)
      西本 佳央
    • Organizer
      第9回 分子科学討論会 2015東京
    • Place of Presentation
      東京工業大学 大岡山キャンパス
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report

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Published: 2015-08-26   Modified: 2018-03-22  

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