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Elucidation of dynamic-molecular recognition mechanism by the dimeric RNA maturation enzymes

Research Project

Project/Area Number 15K06975
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionEhime University

Principal Investigator

Hirata Akira  愛媛大学, 理工学研究科(工学系), 講師 (60527381)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2016: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordstRNA maturation / tRNA modification / recognition mechanism / X-ray structure / SAXS analysis / tRNA methyltransferase / RNA splicing / アーキア / 酵母 / X線結晶構造解析 / tRNA成熟 / 基質認識 / tRNAスプライシング / X線溶液散乱 / RNA成熟 / 動的分子認識機構
Outline of Final Research Achievements

The X-ray structure of archaeal aTrm11, which is homologous to the catalytic unit of Trm11 in eukaryotic tRNA (m2G10) methyltransferase Trm11-Trm112, is determined, and the structure-guided biochemical analysis provides mechanistic insight into site specificity of archaeal Trm11 and furher proposes a molecular ruler mechanism by which the Trm11 defines the distance and angle from the end of 3'-CCA in substrate tRNA to methylation site. The structural and functional analyses of RNA-splicing endonuclease (EndA) from hyperthermophilic archaeon Methanopyrus kandleri have demonstrated that the MKA EndA consists of heterodimer (αβ)2 and shows a constrain substrate specificity.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (16 results)

All 2018 2017 2016 2015 Other

All Journal Article (3 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (10 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Book (1 results) Remarks (2 results)

  • [Journal Article] The RNA-splicing endonuclease from the euryarchaeaon Methanopyrus kandleri is a heterotetramer with constrained substrate specificity2018

    • Author(s)
      Kaneta Ayano、Fujishima Kosuke、Morikazu Wataru、Hori Hiroyuki、Hirata Akira
    • Journal Title

      Nucleic Acids Res.

      Volume: 46 Issue: 4 Pages: 1958-1972

    • DOI

      10.1093/nar/gky003

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A structural sketch of RcdA, a transcription factor controlling the master regulator of biofilm formation2017

    • Author(s)
      Sugino Hirotaka、Usui Takanori、Shimada Tomohiro、Nakano Masahiro、Ogasawara Hiroshi、Ishihama Akira、Hirata Akira
    • Journal Title

      FEBS Lett.

      Volume: 591 Issue: 13 Pages: 2019-2031

    • DOI

      10.1002/1873-3468.12713

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into the site specificity of a tRNA methyltransferase that contains common RNA-binding modules.2016

    • Author(s)
      A. Hirata, S. Nishiyama, T. Tamura, A. Yamauchi, and H. Hori
    • Journal Title

      Nucleic Acids Res.

      Volume: 44 Issue: 13 Pages: 6377-6390

    • DOI

      10.1093/nar/gkw561

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 超好熱性アーキアのtRNA修飾、特にメチル化修飾は高温環境下の生育にとって必須である2017

    • Author(s)
      平田 章
    • Organizer
      第30回日本Archaea研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] tRNA成熟化機構に見られるアーキアの生存戦略2017

    • Author(s)
      平田 章
    • Organizer
      環境微生物系学会合同大会2017
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 真核生物tRNAメチル化酵素Trm7-Trm734複合体の活性発現メカニズムの構造基盤2017

    • Author(s)
      平田 章、岡田 圭祐、吉井 一晃、白石 裕之、西條 慎也、米澤 健人、清水 伸隆、堀 弘幸
    • Organizer
      生命科学系合同学会年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 芳香族アミノ酸の生合成遺伝子群の発現を制御するアーキア転写活性化因子(Tar)の分子認識機構の解明2017

    • Author(s)
      臼井 孝典、金井 保、跡見 晴幸、堀 弘幸、平田 章
    • Organizer
      第18回極限環境生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 超好熱性アーキアMethanopyrus kandleri由来tRNA スプライシングエンドヌクレアーゼの基質認識に関する研究2016

    • Author(s)
      金田綾乃、森数渉、堀弘幸、平田章
    • Organizer
      第17回極限環境生物学会年会
    • Place of Presentation
      東京工業大学すずかけ台キャンパス(神奈川県横浜市緑区)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Structural and functional analyses reveal mechanistic insight into a site specificity of the archaeal tRNA m2G/m22G10 methyltransferase (aTrm11)2016

    • Author(s)
      Hirata A, Nishiyama S, Tamura T, Yamauchi A, and Hori H
    • Organizer
      Extremophiles 2016
    • Place of Presentation
      京都大学(京都府京都市左京区)
    • Year and Date
      2016-09-12
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Structural and founctional analyses reveal mechanistic insight into a site specificity of the archaeal tRNA methyltransferase2016

    • Author(s)
      Hirata A, Nishiyama S, Tamura T, Yamauchi A, and Hori H
    • Organizer
      RNA2016
    • Place of Presentation
      国立京都国際会館 (京都府京都市左京区)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] アーキア由来tRNAm2G10/m22G10メチル化酵素arcTrm11のX線結晶構造 ~tRNA修飾酵素の部位特異性を決定している共通基本原理の統一的理解~2015

    • Author(s)
      平田 章、西山 聖示、田村 俊浩、山内 綾乃、堀 弘幸
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートピアアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] 真核微生物由来tRNA(Gm34)メチル化酵素Trm7-Trm734の構造機能解析2015

    • Author(s)
      岡田 圭祐、平田 章、吉井一晃、堀 弘幸
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートピアアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] アーキアtRNA (m2G10/m22G10) メチル化酵素arcTrm11の基質認識機構の解明2015

    • Author(s)
      平田 章、西山 聖示、田村 俊浩、山内 綾乃、堀 弘幸
    • Organizer
      第16回極限環境生物学会
    • Place of Presentation
      東京海洋大学(東京都港区)
    • Year and Date
      2015-11-08
    • Related Report
      2015 Research-status Report
  • [Book] アーキア生物学2017

    • Author(s)
      日本Archaea研究会、石野 良純、跡見 晴幸、平田 章(執筆分担)
    • Total Pages
      212
    • Publisher
      共立出版
    • ISBN
      9784320057852
    • Related Report
      2017 Annual Research Report
  • [Remarks] アーキア(古細菌)において、タンパク質とRNAが共進化する仕組みの一端を解明しました

    • URL

      https://www.ehime-u.ac.jp/post-71283/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 太古の生命体に近い超好熱菌を用いてtRNAメチル化酵素aTrm11の基質認識メカニズムを解明しました

    • URL

      https://www.ehime-u.ac.jp/post-21283/

    • Related Report
      2016 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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