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Epigenome anthropology: aiming for a better understanding of human phenotypic variation

Research Project

Project/Area Number 15K14612
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Physical anthropology
Research InstitutionThe University of Tokyo (2017)
Jichi Medical University (2015-2016)

Principal Investigator

Kazuhiro Nakayama  東京大学, 大学院新領域創成科学研究科, 准教授 (90433581)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywordsエピジェネティクス / 環境適応 / ヒト / 遊牧 / 農耕 / DNAメチル化 / モンゴル人 / タイ人 / 栄養 / 人類学
Outline of Final Research Achievements

To evaluate the influence of differences in traditional life styles on epigenetic information and phenotypic diversity, We compared the genome - wide methylation levels of the peripheral blood DNA of 48 individuals from Mongolians (nomadic pastoralists) and Thai (agriculturalist). As a result, it was revealed that the CpG sequences near the promoter of the genes contributing to energy metabolism systems, such as the AMP activated protein kinase pathways and the peroxisome proliferator-activated receptor pathways, showed a large difference in methylation level.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (14 results)

All 2017 2016 2015

All Journal Article (4 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 4 results) Book (1 results)

  • [Journal Article] Evidence for Very Recent Positive Selection in Mongolian2017

    • Author(s)
      Nakayama K, Ohashi J, Watanabe K, Munkhtulga L, Iwamoto S.
    • Journal Title

      Molecular Biology and Evolution

      Volume: 印刷中 Issue: 8 Pages: 1936-1946

    • DOI

      10.1093/molbev/msx138

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Influence of AHRR Pro189Ala polymorphism on kidney functions. Biosci Biotech Biochem.2017

    • Author(s)
      Nakayama K, Saito S, Watanabe K, Miyashita H, Nishijima F, Kamo Y, Tada K, Ishizuka S, Niwa T, Iwamoto S, Shimizu H
    • Journal Title

      Biosci Biotech Biochem

      Volume: Published online Issue: 6 Pages: 1120-1124

    • DOI

      10.1080/09168451.2017.1292838

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of deleterious rare variants in MTTP, PNPLA3, and TM6SF2 in Japanese males and association studies with NAFLD.2017

    • Author(s)
      Boonvisut S, Yoshida K, Nakayama K, Watanabe K, Miyashita H, Iwamoto S.
    • Journal Title

      Lipids Health Dis.

      Volume: 16 Issue: 1 Pages: 183-183

    • DOI

      10.1186/s12944-017-0570-y

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An adaptive variant of TRIB2, rs1057001, is associated with higher expression levels of thermogenic genes in human subcutaneous and visceral adipose tissues2017

    • Author(s)
      Nakayama K, Iwamoto S
    • Journal Title

      J Phyiol Anthropol

      Volume: 36 Issue: 1 Pages: 16-16

    • DOI

      10.1186/s40101-017-0132-z

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Variable selective pressures at energy metabolism genes among East Asians2017

    • Author(s)
      Nakayama K
    • Organizer
      Zhejiang University- The University of Tokyo Joint Symposium 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 東アジア人での遊牧・農耕に関連したポリジーン適応の検証2017

    • Author(s)
      中山一大, Munkhtulga Lkhagvasuren, 岩本禎彦
    • Organizer
      日本生理人類学会第76回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] つい誰かに教えたくなる人類学63の大疑問」を使用した人類学教育の例.2017

    • Author(s)
      中山一大
    • Organizer
      第71回日本人類学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] エネルギー代謝システムの多様化に関与するエピジェネティクスの探索2017

    • Author(s)
      中山一大
    • Organizer
      第71回日本人類学会大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Signature of recent natural positive selection in Mongolian genomes2017

    • Author(s)
      Nakayama K
    • Organizer
      The 89th Annual Meeting of the Genetic Society of Japan
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ゲノムワイドDNAメチル化パターンの多様性:遊牧集団と農耕集団の比較2016

    • Author(s)
      中山一大、渡邉和寿、Lkhaguvasuren Munkhtulga, Wasana Sukhumsirichart, 香川靖雄、岩本禎彦
    • Organizer
      第70回日本栄養・食糧学会大会
    • Place of Presentation
      兵庫県西宮市
    • Year and Date
      2016-05-13
    • Related Report
      2015 Research-status Report
  • [Presentation] ゲノムワイドDNAメチル化パターンの多様性:遊牧集団と農耕集団の比較2016

    • Author(s)
      中山一大、渡邉和寿、Lkhaguvasuren Munkhtulga, Wasana Sukhumsirichart, 香川靖雄、岩本禎彦
    • Organizer
      第70回日本栄養・食糧学会大会
    • Place of Presentation
      武庫川女子大学(兵庫県西宮市)
    • Related Report
      2016 Research-status Report
  • [Presentation] 遊牧民族と農耕民族のゲノムワイドメチル化パターンの比較2016

    • Author(s)
      中山一大、渡邉和寿、Munkhtulga Lkhagvasuren, Sukhumsirichart Wasana, 香川靖雄、岩本禎彦
    • Organizer
      日本生理人類学会第74回大会
    • Place of Presentation
      和倉温泉観光会館(石川県七尾市)
    • Related Report
      2016 Research-status Report
  • [Presentation] ゲノムワイドSNP情報から表現型へのアプローチ:ヒトでの研究例を中心に2016

    • Author(s)
      中山一大
    • Organizer
      日本比較臨床医学会第47回学術集会シンポジウム
    • Place of Presentation
      獣医生命科学大学(東京都武蔵野市)
    • Related Report
      2016 Research-status Report
    • Invited
  • [Book] つい誰かに教えたくなる人類学63の大疑問2015

    • Author(s)
      中山一大、市石博
    • Total Pages
      187
    • Publisher
      講談社
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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