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Molecular epidemiology of HIV and the genetic factors influencing AIDS disease progression in Asia

Research Project

Project/Area Number 16256002
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section海外学術
Research Field Virology
Research InstitutionNATIONAL INSTITUTE OF INFECTIOUS DISEASES

Principal Investigator

TAKEBE Yutaka  NIID, AIDS RESEARCH CENTER, CHIEF, エイズ研究センター, 室長 (50126116)

Co-Investigator(Kenkyū-buntansha) KUSAGAWA Shigeru  NIID, AIDS RESEARCH CENTER, SENIOR RESEARCHER, エイズ研究センター, 主任研究者 (10267990)
SHIINO Teiichiro  NIID, AIDS RESEARCH CENTER, SENIOR RESEARCHER, エイズ研究センター, 主任研究者 (90291129)
SHIODA Tatsuo  OSAKA UNIV., PROFESSOR, 医学部微生物病研究所・免疫・生体防御研究部, 教授 (00187329)
OKA Shinichi  INTERNATIONAL MEDICAL CENTER OF JAPAN, DIRECTOR, エイズ治療・研究開発センター, 部長 (20194326)
Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥43,160,000 (Direct Cost: ¥33,200,000、Indirect Cost: ¥9,960,000)
Fiscal Year 2006: ¥13,780,000 (Direct Cost: ¥10,600,000、Indirect Cost: ¥3,180,000)
Fiscal Year 2005: ¥13,780,000 (Direct Cost: ¥10,600,000、Indirect Cost: ¥3,180,000)
Fiscal Year 2004: ¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
KeywordsASIA / HIV / MOLECULAR EPIDEMIOLOGY / SUBTYPE / CRF / RECOMBINATION / DISEASE / GENETIC FACTORS
Research Abstract

(1)Molecular epidemiology of HIV in Asia :
We investigated the molecular epidemiology of HIV in several study sites in Asia to elucidate the interrelationships of the epidemics with those of surrounding regions and of different risk populations. In China, we found the close Interrelationships of the epidemics between IDU/former plasma donor (FPD) and heterosexuals. In particular, HIV-1 subtype B, the strain responsible for the tragic outbreaks In central China, is found to predominate among heterosexuals. This urges the urgent need for implementation of effective measures to prevention the Infections into general population in China.
HIV-1 nomenclature system is becoming very complicated as the time goes by. A major HIV-1 strain, HIV-1 group M, responsible for the current pandemic is classified at least 11 subtypes and subsubtypes and 34 circulating recombinant forms (CRFs) so far. We identified the 33rd CRF (CRF33_01B) among IDU and heterosexuals in Malaysia. This is the first CRF reported from a research group in Japan that was officially approved by international HIV sequence databases.
(2)Investigation of virus and host factors influencing the disease progression to AIDS :
The rate of disease progression to AIDS is influenced greatly by several factors : most Importantly viral and host factors. We for the first time identified the case of CRF01_AE infection with gross deletions in nef-LTR regions among a long-term nonprogressor in Asia. This is the first case of nef-LTR deletion found among nonsubtype B strains, associated with slower disease progression. For the host factors, Dr.Shioda and his colleagues confirmed the significant protective effect of IL4-589T and RANTES-28G on HV disease progression in their study conducted in Thailand.
These findings could provide the information critical for understanding the genesis of HIV/AIDS epidemic in Asia and for the future vaccine strategies to prevent HIV spread in Asia.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (35 results)

All 2007 2006 2005 2004

All Journal Article (29 results) Book (4 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Molecular epidemiology of HIV (Update) : Understanding the genesis of global AIDS epidemic.2007

    • Author(s)
      Takebe, Y., Uenishi, R., Li, S.
    • Journal Title

      Book Chapter for "HIV : Molecular biology and pathogenesis : viral mechanisms : 48" (Elsevier Book series) (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Inhibiting lentiviral replication by HEXIMI, a cellular negative regulator of the CDK9/cyclin T complex(P-TEFb)2007

    • Author(s)
      shimizu S, Komano J, Urano E, Futahashi Y, Miyauchi K, Isogai Mhosi Matsuda Z, Notomi K, Onoji T, Takebe Y, Yamamoto N
    • Journal Title

      AIDS 21:

      Pages: 977-980

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Wild type and H43Y variant of human TRIM5α similar antihuman immunodeficiency virus type 1 activity both in vivo and in vitro.2007

    • Author(s)
      Nakayama EE, Carpentier W, Costagliola D, Shioda T, Iwamoto A, Debre P, Yoshimura K, Autran B, Matsushita S, Theodorou I
    • Journal Title

      Immunogenetics Apr4

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia.2006

    • Author(s)
      Tee, K.K., Li, X.-J., Nohtomi, K., Ng, K.P., Kamarulzaman, A., Takebe, Y.
    • Journal Title

      J. AIDS 43(5)

      Pages: 523-529

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Protective effects of IL4-589T and RANTES-28G on HIV-1 disease progression in infected Thai females.2006

    • Author(s)
      Wichukchinda, N., Nakayama, E, E., Rojanawiwat, A, Pathipvanich, P., Auwanit, S-V., Ariyoshi, K., Sawanpanyalert, P., Shioda, T.
    • Journal Title

      AIDS 20

      Pages: 189-196

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] siVirus : web-based antiviral siRNA design software for highly divergent viral sequences.2006

    • Author(s)
      Naito, Y., Ui-Tei, K., Nishikawa, T., Takebe, Y., Saigo, K.
    • Journal Title

      Nucl. Acid Res. 34

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evidence for the acquisition of multidrug resistance by an HIV clinical isolate via human sequence transduction.2006

    • Author(s)
      Takebe, Y., Telesnitsky, A.
    • Journal Title

      Virology 351

      Pages: 1-6

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification of a novel circulating recombinant form (CRF33_01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia.2006

    • Author(s)
      Tee, K.K., Li, X.-J., Nohtomi, K., Ng, K.P., Kamarulzaman, A., Takebe, Y.
    • Journal Title

      J.AIDS 43(5)

      Pages: 523-529

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Protective effects of IL4-589T and RANTES-28G on HIV-1 disease progression in infected Thai females.2006

    • Author(s)
      Wichukchinda, N., Nakayama, E, E., Rojanawiwat, A., Pathipvanich, P., Auwanit, S-V., Ariyoshi, K., Sawanpanyalert, P., Shioda, T.
    • Journal Title

      AIDS 20

      Pages: 189-196

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Modified dynabeads method for enumerating CD4+ T-lymphocyte count for widespread use in resource-limited situations.2006

    • Author(s)
      Bi, X., Gatanaga, H., Tanaka, M., Hnda, M., Ida, S., Kimura, S., Oka, S.
    • Journal Title

      Acquir Immune Dific Syndr. 38

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] web-based antiviral siRNA design software for highly divergent viral sequences.2006

    • Author(s)
      Naito, Y., Ui-Tei, K., Nishikawa, T., Takebe, Y., Saigo, K.siVirus
    • Journal Title

      Nucl.Acid Res 34

      Pages: 1-6

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evidence for the acquisition of multidrug resistance by an HIV clinical2006

    • Author(s)
      Takebe Y, Telesnitsky A
    • Journal Title

      Virology 351:

      Pages: 1-6

    • Related Report
      2006 Annual Research Report
  • [Journal Article] siVirus : web-based antiviral siRNA design software for highly divergent viral sequences.2006

    • Author(s)
      Naito Y, Ui-Tei K, Nishikawa YT, Takebe Y, Saigo K
    • Journal Title

      Nucleic Acids Research 34

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Indentification of a novel circulating recombinant form(CRF33_01B) dissemination widely among various risk populations in Kuala Lumpur, Malaysia.2006

    • Author(s)
      Tee.K.K., Li.X-J, Nohtomi K, Ng K.P, Kamarulzaman A, Takebe Y
    • Journal Title

      JAIDS 43(5):

      Pages: 523-529

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Urinary beta2-microglobulin as a possible sensitive marker for renal injury caused by tenofovir disoproxil fumarate.2006

    • Author(s)
      Gatanaga H, Tachikawa N, Kikuchi Y, Teruya K, Genka I, Honda M, Tamura J, Yazaki H, Ueda A, kimura S, Oka S
    • Journal Title

      AIDS Res Hum Retroviruses 22(8)

      Pages: 744-748

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Molecular Epidemiology of the Heterosexual HIV-1 Epidemic in Kunming, Yunnan Province, China, Suggests Origin from the Local IDU Epidemic.2005

    • Author(s)
      Li, X.-J., Kusagawa, S., Xia, X., Yang, C., Wang, Q., Yokota, Y., Hoshina, Y., Onogi, T., Nohtomi, K., Imamura, Y., Shiino, T., Yang, R., Yamamoto, N., Ben, K., Takebe, Y.
    • Journal Title

      AIDS Res and Human Retroviruses 21

      Pages: 977-980

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification of attenuated HIV-1 CRF01_AE variant associated with slow disease progression due to gross genetic alterations in the nef-LTR sequences.2005

    • Author(s)
      Kondo, M., Shima, T., Sudo, K., Nishizawa, M., Iwamuro, S., Okabe, T., Takebe, Y., Imai, M.
    • Journal Title

      J. Inf Dis 192

      Pages: 56-61

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Modified dynabeads method for enumerating CD4+ T-lymphocyte count for widespread use in resource-limited situations.2005

    • Author(s)
      Bi, X., Gatanaga, H., Tanaka, M., Hnda, M., Ida, S., Kimura, S., Oka, S.
    • Journal Title

      Acquir Immune Dific Syndr. 38

      Pages: 1-4

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification of attenuated HIV-1 CRFOI_AE variant associated with slow disease progression due to gross genetic alterations in the nef-LTR sequences.2005

    • Author(s)
      Kondo, M., Shima, T., Sudo, K., Nishizawa, M., Iwamuro, S., Okabe, T., Takebe, Y., Imai, M.
    • Journal Title

      J.Inf Dis 192

      Pages: 56-81

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification of attenuated HIV-1 CRF01_AE variant associated with slow disease progression due to gross genetic alterations in the nef-LTR sequences.2005

    • Author(s)
      Kondo, M., Nishizawa, M., Iwamuro, S., Okabe.T., Takebe, Y., Imai, M.et al.
    • Journal Title

      J.Inf Dis 192:

      Pages: 56-61

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Influence of glycosylation on the efficacy of an Env-based vaccine against SIVmac239 in a macaque AIDS model.2005

    • Author(s)
      Mori, K., Sugimoto, C., Ohgimoto, S., Shioda, 'T., Takebe, Y., Nagai, Y.et al.
    • Journal Title

      J.Virol. 79(16):

      Pages: 10386-10396

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Ag85B of mycobacteria elicits effective CTL responses through activation of robust Th1 immunity as a novel adiuvant in DNA vaccine2005

    • Author(s)
      Takamura, S., Matsuo, K., Takebe, Y., Yasutomi.Y.
    • Journal Title

      J.Immunol 175:

      Pages: 2541-2547

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Molecular Epidemiology of the Heterosexual HIV-1 Epidemic in Kunming, Yunnan Province. China. Suggests Origin from the Local IDU Epidemic..2005

    • Author(s)
      Li, X.-J., Kusagawa, S., Xia, X., Shiino, T., Yamamoto, N., Ben, K., Takebe, Y.et al.
    • Journal Title

      AIDS Res and Human Retroviruses 21:

      Pages: 977-980

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Identification of attenuated HIV-1 CRF01_AE variant associated with slow disease progression due to gross genetic alterations in the nef-LTR sequences.2005

    • Author(s)
      Kondo, M., Nishizawa, M., Iwamuro, S., Okabe, T., Takeb, Y., Imai, M.et al.
    • Journal Title

      J.Infl Dis. (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Isolation and biological characterization of an infectious molecular clone of HIV-1 CRF08 BC from China.2004

    • Author(s)
      Kusagawa, S., Yang, R., Takebe, Y.
    • Journal Title

      Proceeding of XV International AIDS Conference

      Pages: 39-42

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Geographical hotspots of extensive intersubtype recombination in Asia : "Melting pot" that generates diverse forms of HIV-1 unique recombinants.2004

    • Author(s)
      Takebe, Y., Kusagawa, S., Shiino, T., Thwe, M., Ave, K., Lwin, H.H., et al.
    • Journal Title

      Proceeding of XV International AIDS Conference

      Pages: 35-38

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Molecular epidemiology of HIV : Tracking AIDS pandemic.2004

    • Author(s)
      Takebe, Y., Kusagawa, S., Motomura.K.
    • Journal Title

      Pediatrics International 46

      Pages: 236-244

    • NAID

      10014200838

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A CCR2-V641 polymorphism affects stability of CCR2A isoform.2004

    • Author(s)
      Nakayama, E., Tanaka, Y., Nagai, Y., Iwamoto, A., Shioda, T.
    • Journal Title

      AIDS 18

      Pages: 729-738

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Homozygous CYP2B6 ^*6(Q172H and K262R) correlates with high plasma efavirenz concentrations in HIV-1 patients treated with standard efavirenz-containing regimens.2004

    • Author(s)
      Tsuchiya, K., Teruya, K., Shirasaka, T., Kimura, S., Oka, S.et al.
    • Journal Title

      Biochemical and Biophysical Research Communications 319

      Pages: 1322-1326

    • Related Report
      2004 Annual Research Report
  • [Book] Book Chapter for "HIV : Molecular biology and pathogenesis : viral mechanisms : 48" (Elsevier Book series)2007

    • Author(s)
      Takebe, Y., Uenishi, R., Li, S.
    • Publisher
      Molecular epidemiology of HIV (Update) : Understanding the genesis of global AIDS epidemic.(in press)
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Molecular epidemiology of HIV(Update) : Understanding the genesis of global AIDS epidemic.(Book Chapter for "HIV : Molecular biology and pathogenesis : viral mechanisms : 48"2007

    • Author(s)
      Takebe Y, Uenishi R, Li, X.-J
    • Publisher
      Elsevier Book series(in press)
    • Related Report
      2006 Annual Research Report
  • [Book] 「ハリソン内科 第二版」HIV感染症:エイズと関連疾患173:9-162005

    • Author(s)
      Anthony S.Fauci, H.Clifford Lane
    • Total Pages
      8
    • Publisher
      メディカル・サイエンス・インターナショナル
    • Related Report
      2005 Annual Research Report
  • [Book] 分子予防環境医学生命科学研究の予防・環境医学への統合 1-4 ヒト後天性免疫不全症候群(エイズ)の分子予防医学(武部豊)2004

    • Author(s)
      松島綱治
    • Publisher
      本の泉社
    • Related Report
      2004 Annual Research Report
  • [Patent(Industrial Property Rights)] 「最高度の保存領域に対する抗HIV-1 siRNA配列」2007

    • Inventor(s)
      内藤雄樹, 西郷薫, 程久美子, 武部豊
    • Filing Date
      2007
    • Related Report
      2006 Annual Research Report
  • [Patent(Industrial Property Rights)] 弱毒型HIV-1塩基配列2005

    • Inventor(s)
      武部豊, 今井光信, 近藤真規子
    • Industrial Property Number
      2005-008741
    • Filing Date
      2005
    • Related Report
      2004 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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