Discovery of Hepatitis Knowledge by Data Mining Methods with Multi-Sources
Project/Area Number |
16300043
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Research Category |
Grant-in-Aid for Scientific Research (B)
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Allocation Type | Single-year Grants |
Section | 一般 |
Research Field |
Intelligent informatics
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Research Institution | Japan Advanced Institute of Science and Technology |
Principal Investigator |
TU Baoho Japan Advanced Institute of Science and Technology, School of Knowledge Science, Professor, 知識科学研究科, 教授 (60301199)
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Co-Investigator(Kenkyū-buntansha) |
TAKABAYASHI Katsuhiko Chiba University Hospital, Professor, 医学部附属病院, 教授 (90188079)
KAWASAKI Saori JapanAdvanced Institute of Science and Technology, School of Knowledge Science, Associate, 知識科学研究科, 助手 (40377437)
TUAN Nam Tran (TRAN Nam Tuan) 北陸先端科学技術大学院大学, 知識科学研究科, 助手 (60362018)
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Project Period (FY) |
2004 – 2006
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Project Status |
Completed (Fiscal Year 2006)
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Budget Amount *help |
¥9,600,000 (Direct Cost: ¥9,600,000)
Fiscal Year 2006: ¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 2005: ¥2,900,000 (Direct Cost: ¥2,900,000)
Fiscal Year 2004: ¥4,500,000 (Direct Cost: ¥4,500,000)
|
Keywords | HEPATITIS / DATA MINING / MULTIPLE RESOURCES / TEMPORAL ABSTRACTION / MEDICAL LITERATURE / EXPERT EVALUATIONS / INTEGRATED APPROACH / hepatitis / temporal abstraction / text mining / expert evaluation / 時区間関係 / 医療データマイニング / 医療文献マイニング / ウィルス性肝炎 / 専門知識 / 背景知識獲得 |
Research Abstract |
1. Developed a novel method of temporal abstraction abased on temporal logic that exploits temporal relations. This is a new method for analyzing medical temporal data by extracting all kinds of possible temporal relations existing in the data, and discovering rules using the relations to solve the three hepatitis problems. 2. Developed text mining methods to exploit huge sources of textual data (using advanced machine learning techniques such as conditional random fields, tolerance rough set model, etc.) and apply them to MEDLINE database to find knowledge for two purposes: (a) finding back ground knowledge to narrow the search space in the learning phase and (b) finding knowledge to interpret discovered rules by data mining methods. 3. Developed in integrated approach to medical data mining that based on mutually combination of learning methods, medical literature and expert inspection. The approach showed its efficiency is much higher than just using each method. 4. We succeeded in some other research issues such as fundamental research (on kernel methods, visualization, rule induction, optimization), bioinformatics (protein interaction). These results allow us to continue study medical data with advanced learning methods and the relations between clinical data and disease genes.
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Report
(4 results)
Research Products
(191 results)
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[Journal Article] Temporal Abstraction and Data Mining with Visualization of Laboratory Data2007
Author(s)
Takabayashi, T., Ho, T.B., Yokoi, H., Nguyen, T.D., Kawasaki, S., Le, S.Q., Suzuki, T., Yokosuka, O.
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Journal Title
The Proceedings of Medinfo 2007 Congress, Brisbane, 20-24 August, 2007 (in press)
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] Kernel Matrix Evaluation2007
Author(s)
Nguyen, C.H., Ho, T.B.
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Journal Title
The Proceedings of the Twentieth International Joint Conference on Artificial Intelligence IJCAI'07, Hyderabad, January 6-12, 2007
Pages: 987-992
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Exploiting Temporal Relations in Mining Hepatitis Data2007
Author(s)
Ho, T.B., Nguyen, C.H., Kawasaki, S., Le, S.Q., Takabayashi, K.
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Journal Title
Journal of New Generation Computing, Ohmsha, Ltd. and Springer-Verlag Vol. 25. No. 3(in press)
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Temporal Abstraction and Data Mining with Visualization of Laboratory Data2007
Author(s)
Takabayashi, T., Ho, T.B., Yokoi, H., Nguyen, T.D., Kawasaki, S., Le, S.Q., Suzuki, T., Yokosuka, 0.
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Journal Title
Medinfo 2007 Congress, 20-24 August, Brisbane (in press)
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Kernel Matrix Evaluation2007
Author(s)
Nguyen, C.H., Ho, T.B.
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Journal Title
Twentieth International Joint Conference on Artificial Intelligence IJCAI'07, Hyderabad, January 6-12
Pages: 987-992
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Temporal Abstraction and Data Mining with Visualization of Laboratory Data2007
Author(s)
Takabayashi, T., Ho, T.B., Yokoi, H., Nguyen, T.D., Kawasaki, S., Le, S.Q., Suzuki, T., Yokosuka, O
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Journal Title
The Proceedings of Medinfo 2007 Congress, 20-24 August, Brisbane (In press)
Related Report
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[Journal Article] Kernel Matrix Evaluation2007
Author(s)
Nguyen, C.H., Ho, T.B.
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Journal Title
The proceedings of Twentieth International Joint Conference on Artificial Intelligence(IJCAI'07),January 6-12,Hyderabad, India
Pages: 987-992
Related Report
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[Journal Article] Multiple Attribute Decision Making Under Uncertainty : The Evidential Reasoning Approach Revisited2006
Author(s)
Huynh, V.N., Nakamori, Y., Ho, T.B., Murai, T
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Journal Title
IEEE Trans. on Systems, Man, and Cybernetics, part A 6-4
Pages: 804-822
NAID
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Multiscale Feature Extraction for Time Series Classification with Hybrid Feature Selection2006
Author(s)
Zhang, H., Lin, S.M., Huang, W., Kawasaki, S., Ho, T.B.
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Journal Title
The Proceedings of the International Conference on Intelligent Computing ICIC'06, Kunming, August 16-19, 2006(Springer) LNCIS 344
Pages: 939-944
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Parallel Training of CRFs : A Practical Approach to Build Large-Scale Prediction Models for Sequence Data2006
Author(s)
Phan, X.H., Nguyen, L.M., Horiguchi, S., Inoguchi, Y., Ho, T.B.
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Journal Title
The Proceedings of Workshop on Parallel Data Mining, ECML/PKDD 2006, Berlin, September 18-22, 2006
Pages: 51-63
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Feature Extraction for Time Series Classification Using Discriminating Wavelet Coefficients2006
Author(s)
Zhang, H., Ho, T.B., Lin, M.S., Liang, X.
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Journal Title
The Proceedings of the Third International Symposium on Neural Networks (ISNN 2006), Chengdu, 28-31 May, 2006(Springer) LNAI 3971
Pages: 1394-1399
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] Conditional Random Fields for Predicting and Analyzing Histone Occupancy, Acetylation and Methylation Areas in DNA Sequences2006
Author(s)
Tran, D.H., Pham, T.H., Satou, K., Ho, T.B.
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Journal Title
The Proceedings of the 4th European Workshop on Evolutionary Computation and Machine Learning in Bioinformatics, Budapest, 10-12 April, 2006
Pages: 221-230
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] High-Performance Training of Conditional Random Fields for Large-Scale Sequential Labeling Applications2006
Author(s)
Phan, X.H., Nguyen, L.M., Inoguchi, Y., Ho, T.B., Horiguchi, S.
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Journal Title
The Proceedings of the International Conference on High Performance Scientific Computing, Hanoi, March 6-10, 2006.
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] Multiple Attribute Decision Making Under Uncertainty, The Evidential Reasoning Approach Revisited2006
Author(s)
Huynh, V.N., Nakamori, Y., Ho, T.B., Murai, T
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Journal Title
IEEE Trans, on Systems, Man, and Cybernetics, part A Vol. 6, No. 4
Pages: 804-822
NAID
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Multiscale Feature Extraction for Time Series Classification with Hybrid Feature Selection2006
Author(s)
Zhang, H., Lin, S.M., Huang, W., Kawasaki, S., Ho, T.B.
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Journal Title
International Conference on Intelligent Computing ICIC'06, Kunming, August 16-19, Lecture Notes in Control and Information Sciences LNCIS 344
Pages: 939-944
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] A Practical Approach to Build Large-Scale Prediction Models for Sequence Data2006
Author(s)
Phan, X.H., Nguyen, L.M., Horiguchi, S., Inoguchi, Y., Ho, T.B., Parallel Training of CRFs
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Journal Title
Workshop on Parallel Data Mining, ECML/PKDD 2006, Berlin, September 18-22
Pages: 51-63
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] High-Performance Training of Conditional Random Fields for Large-Scale Sequential Labeling Applications2006
Author(s)
Phan, X.H., Nguyen, L.M., Inoguchi, Y., Ho, T.B., Horiguchi, S.
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Journal Title
International Conference on High Performance Scientific Computing, March 6-10
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Parallel Training of CRFs : A Practical Approach to Build Large-Scale Prediction Models for Sequence Data2006
Author(s)
Phan, X.H., Nguyen, L.M., Horiguchi, S., Inoguchi, Y., Ho, T.B.
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Journal Title
The proceedings of Workshop on Parallel Data Mining, ECML/PKDD 2006,Berlin, September 18-22
Pages: 51-63
Related Report
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[Journal Article] Feature Extraction for Time Series Classification Using Discriminating Wavelet Coefficients2006
Author(s)
Zhang, H., Ho, T.B., Lin, M.S., Liang, X
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Journal Title
The proceedings of Third International Symposium on Neural Networks(ISNN 2006),28-31 May, Chengdu, China(Lecture Notes in Artificial Intelligence LNAI 3971,Springer)
Pages: 1394-1399
Related Report
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[Journal Article] Multiscale Feature Extraction for Time Series Classification with Hybrid Feature Selection2006
Author(s)
Zhang, H., Lin, S.M., Huang, W., Kawasaki, S., Ho, T.B.
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Journal Title
The proceedings of International Conference on Intelligent Computing(ICIC'06),August 16-19,Kunming, China(Lecture Notes in Control and Information Sciences LNCIS 344)
Pages: 939-944
Related Report
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[Journal Article] Exploiting Temporal Relations in Mining Hepatitis Data2006
Author(s)
Takabayashi, K., Ho, T.B., Nguyen, C.H., Kawasaki, S., Yokoi, H., Suzuki, T., Yokosuka, O.
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Journal Title
The proceedings of he 26th Joint Conference on Medical Informatics, November 1-4,Sapporo
Related Report
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[Journal Article] Conditional Random Fields for Predicting and Analyzing Histone Occupancy, Acetylation and Methylation Areas in DNA Sequences2006
Author(s)
Tran, D.H., Pham, T.H., Satou, K., Ho, T.B.
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Journal Title
The proceedings of 4th European Workshop on Evolutionary Computation and Machine Learning in Bioinformatics, Budapest,10-12 April
Pages: 221-230
Related Report
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[Journal Article] Qualitatively Predicting Acetylation and Methylation Areas in DNA Sequences2005
Author(s)
Pham, T.H., Tran, D.H., Ho, T.B., Satou, K., Valiente, G.
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Journal Title
The Proceedings of Genome Informatics 2005, Yokohama, Universal Academic Press 16-2
Pages: 3-11
NAID
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] Co-Training of Conditional Random Fields for Segmenting Sequence Data2005
Author(s)
Phan, X.H., Nguyen, L.M., Ho, T.B., Inoguchi, Y., Horiguchi, S.
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Journal Title
The Proceedings of First World Congress of the International Federation for Systems Research (IFSR'05), Symposium on Data/Text Mining from Large Databases, Kobe, 15-17 November
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Sentence extraction with support vector machine ensemble2005
Author(s)
Nguyen, L.M., Shimazu, A., Ho, T.B., Phan, X.H., Horiguchi, S.
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Journal Title
The Proceedings of First World Congress of the International Federation for Systems Research (IFSR'05), Symposium on Data/Text Mining from Large Databases, Kobe, 15-17 November
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Improving Discriminative Sequential Learning with Rare-but-Important Associations2005
Author(s)
Phan, X.H., Nguyen, L.M., Ho, T.B., Horiguchi, S.
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Journal Title
The Proceedings of ACM International Conference on Knowledge Discovery and Data Mining, ACM SIGKDD-05, Chicago, August 21-24, 2005
Pages: 304-313
Description
「研究成果報告書概要(和文)」より
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[Journal Article] An Imbalanced Data Rule Learner2005
Author(s)
Nguyen, C.H., Ho, T.B.
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Journal Title
The Proceedings of the 9th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD 2005), Porto, 3-7 October, 2005(Springer) LNAI 3721
Pages: 617-624
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Classification with Maximum Entropy Modeling of Predictive Association Rules2005
Author(s)
Phan, X.H., Nguyen, L.M., Horiguchi, S., Ho, T.B., Inoguchi, Y.
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Journal Title
The Proceedings of 16th European Conference on Machine Learning (ECML), Porto, 3-7 October, 2005(Springer) LNAI 3720
Pages: 682-689
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Active Mining for Structured Data2005
Author(s)
Motoda, H., Ho, T.B., Washio, T., Yada, K., Yoshida, T., Ohara, K.
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Journal Title
Journal of Japanese Society for Artificial Intelligence Vol. 20, No. 2
Pages: 172-179
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Qualitatively Predicting Acetylation and Methylation Areas in DNA Sequences2005
Author(s)
Pham, T.H., Tran, D.H., Ho, T.B., Satou, K., Valiente, G.
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Journal Title
Genome Informatics 2005, Yokohama, Universal Academic Press Vol. 16, No. 2
Pages: 3-11
NAID
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Co-Training of Conditional Random Fields for Segmenting Sequence Data2005
Author(s)
Phan, X.H., Nguyen, L.M., Ho, T.B., Inoguchi, Y., Horiguchi, S.
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Journal Title
First World Congress of the International Federation for Systems Research (IFSR'05), Symposium on Data/Text Mining from Large Databases, Kobe 15-17(Best student paper award)
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Sentence extraction with support vector machine ensemble2005
Author(s)
Nguyen, L.M., Shimazu, A., Ho, T.B., Phan, X.H., Horiguchi, S.
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Journal Title
First World Congress of the International Federation for Systems Research (IFSR'05), Symposium on Data/Text Mining from Large Databases, Kobe 15-17
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Improving Discriminative Sequential Learning with Rare-but-Important Associations2005
Author(s)
Phan, X.H., Nguyen, L.M., Ho, T.B., Horiguchi, S.
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Journal Title
ACM International Conference on Knowledge Discovery and Data Mining, ACM SIGKDD-05, Chicago, August 21-24
Pages: 304-313
Description
「研究成果報告書概要(欧文)」より
Related Report
-
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[Journal Article] An Imbalanced Data Rule Learner2005
Author(s)
Nguyen, C.H., Ho, T.B.
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Journal Title
9th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD), Porto 3-7, 3721
Pages: 617-624
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Classification with Maximum Entropy Modeling of Predictive Association Rules2005
Author(s)
Phan, X.H., Nguyen, L.M., Horiguchi, S., Ho, T.B., Inoguchi, Y.
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Journal Title
16th European Conference on Machine Learning, Porto 3-7, 3720
Pages: 682-689
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Qualitatively Predicting Acetylation and Methylation Areas in DNA Sequences2005
Author(s)
Pham, T.H., Tran, D.H., Ho, T.B., Satou, K., Valiente, G.
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Journal Title
Genome Informatics Vol.16,No.2
Pages: 3-11
NAID
Related Report
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[Journal Article] Temporal Logic in Mining Hepatitis Data2004
Author(s)
Ho, T.B., Le, S.Q., Nguyen, C.H., Kawasaki, S., Yokoi, H., Takabayashi, K.
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Journal Title
The Proceedings of Japan-Vietnam Joint Workshop on Active Mining, Hanoi, 4-7 December, 2004
Pages: 55-60
NAID
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] Scientific Data Mining2004
Author(s)
Ho, T. B.
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Journal Title
The Proceedings of the 5th International Symposium on Knowledge and Systems Sciences, Ishikawa, 10-12 November, 2004
Pages: 346-352
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] Data Mining of Viral Hepatitis with Temporal Abstraction2004
Author(s)
Takabayashi, K., Yokoi, H., Ho, T.B., Nguyen, T.D., Kawasaki, S., Le, S.Q., Yokosuka, O., Imazeki, O., Satomura, Y.
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Journal Title
The Proceedings of Medlnfo 2004, 7-11 September, San Fransisco
Pages: 1877-1877
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] Combining Temporal Abstraction and Data Mining to Study Hepatitis2004
Author(s)
Ho, T.B., Kawasaki, S., Le, S.Q., Tran, T.N., Takabayashi, K., Yokoi, H.
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Journal Title
The Proceedings of ECML/PKDD 2004 Workshop on Statistical Approaches to Web Mining, Pisa 20-24 September, 2004
Pages: 155-167
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] Probabilistic Sentence Reduction Using Support Vector Machines2004
Author(s)
Nguyen, L.M., Shimazu, A., Horiguchi, S., Ho, T.B., Fukushi, M.
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Journal Title
The Proceedings of The 20th International Conference on Computational Linguistics (COLING 2004), 23-27 August, Geneva
Pages: 743-749
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] A New Approach to Belief Modeling2004
Author(s)
Huynh, V.N., Murai, T., Nakamor Y., Ho, T.B.
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Journal Title
The Proceedings of the Third International Symposium on Foundations of Information and Knowledge Systems (FoIKS), Vienna, 17-20 February, 2004(Springer) LNCS 2942
Pages: 196-212
Description
「研究成果報告書概要(和文)」より
Related Report
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[Journal Article] Temporal Logic in Mining Hepatitis Data2004
Author(s)
Ho, T.B., Le, S.Q., Nguyen, C.H., Kawasaki, S., Yokoi, H., Takabayashi, K.
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Journal Title
Japan-Vietnam Joint Workshop on Active Mining, Hanoi 4-7
Pages: 55-60
NAID
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Data Mining of Viral Hepatitis with Temporal Abstraction2004
Author(s)
Takabayashi, K., Yokoi, H., Ho, T.B., Nguyen, T.D., Kawasaki, S., Le, S.Q., Yokosuka, O., Imazeki, 0., Satomura, Y.
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Journal Title
MedInfo 2004, San Fransisco 7-11
Pages: 1877-1877
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Combining Temporal Abstraction and Data Mining to Study Hepatitis2004
Author(s)
Ho, T.B., Kawasaki, S., Le, S.Q., Tran, T.N., Takabayashi, K., Yokoi, H.
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Journal Title
ECML/PKDD 2004 Workshop on Discovery ChallengePisa 20-24
Pages: 155-167
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] A New Approach to Belief Modeling2004
Author(s)
Huynh, V.N., Murai, T., Nakamori, Y., Ho, T.B.
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Journal Title
Third International Symposium on Foundations of Information and Knowledge Systems (FoIKS), Wienna, 17-20 February 2004, Lecture Notes in Computer Science 2942, Springer
Pages: 196-212
Description
「研究成果報告書概要(欧文)」より
Related Report
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[Journal Article] Springer-Verlag
Author(s)
Huynh, V.N., Nakamori, Y., M.Ryoke, Ho, T.B.
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Journal Title
Fuzzy Optimization and Decision Making(Decision making under uncertainty with fuzzy targets)
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