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Genomic architecture and evolutionary organization by three-dimensional nuclear positioning of chromosome territories in mammalian species especially in primates

Research Project

Project/Area Number 16510143
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 基礎ゲノム科学
Research InstitutionThe Graduate University for Advanced Studies (Sokendai)

Principal Investigator

TANABE Hideyuki  The Graduate University for Advanced Studies (Sokendai), Department of Evolutionary Studies of Biosystems, Associate Professor (50261178)

Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,900,000)
Fiscal Year 2005: ¥600,000 (Direct Cost: ¥600,000)
Fiscal Year 2004: ¥3,300,000 (Direct Cost: ¥3,300,000)
Keywordschromosome / nuclear architecture / primates / chromosome territory / FISH / genome evolution / cell culture / 3D-FISH / 染色体テリトリ
Research Abstract

Chromosome territories (CTs) in mammalian cell nuclei are highly compartmentalized as distinct domains and visualized by three-dimensional fluorescence in situ hybridization (3D-FISH) technique. The radial distribution of CTs is highly correlated with their gene densities and physical sizes. As an example, human 18 and 19 CTs show discrete difference in their positioning in lymphocyte nuclei; the gene-poor human 18 CTs are preferentially located at the nuclear periphery, while the gene-dense human 19 CTs are found in the nuclear interior. Here we investigated by 3D-FISH technique, 1) how radial distribution of CTs is evolutionarily conserved in primates, 2) how degree of relative positioning of CTs is involved in the evolutionary chromosomal translocations? First, we performed 3D-FISH analyses using the human 18 and 19 painting probes on the primate lymphocytes derived from various species, from chimpanzees, gibbons, Old World monkeys (6 species), and New World monkeys (5 species). The results showed that the topology of human 18 and 19 homologous CTs was highly conserved among those primate species. To study within the whole nuclear space, we developed the pooled chromosome paints specific for detecting the peripheral (P) or interior (I) nuclear space. The results by these probes also showed highly evolutionarily conserved even within the gibbon nuclei with highly evolutionary chromosomal rearrangements. Second, we used human chromosome 2p and 2q paints which is considered to be formed after fusing two separate acrocentric chromosomes, present in the great apes and Old World monkeys. Relative positioning of human 2p and 2q homologous CTs in primates showed the frequency with one pair chromosome kissing between 2p and 2q homologs is lower among the Old World monkeys but is higher among the great apes, suggesting that it has tendency with higher frequency of the chromosome kissing between 2p and 2q homologs among the evolutionary closed species from human.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (22 results)

All 2007 2005 2004

All Journal Article (12 results) (of which Peer Reviewed: 1 results) Presentation (10 results)

  • [Journal Article] 染色体テリトリーの3次元核内配置解析2007

    • Author(s)
      田辺秀之
    • Journal Title

      生物の科学遺伝別冊 日本の遺伝学の潮流-日本遺伝学会第78回大会ハイライト- No.21

      Pages: 171-175

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Analyses of chromosome territory arrangements by 3D-FISH2007

    • Author(s)
      Hideyuki Tanabe
    • Journal Title

      Seibutsu no kagaku Iden bessatsu No.21

      Pages: 171-175

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Inter- and intra-specific gene-density correlated radial chromosome territory arrangements are conserved in Old World monkeys.2005

    • Author(s)
      Hideyuki Tanabe, Katrin Kupper, Takafumi Ishida, Michaela Neusser, Hiroshi Mizusawa
    • Journal Title

      Cytogenetic and Genome Research 108

      Pages: 255-261

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Technical note. "Radial distribution of interphase chromosome territories in the human lymphocyte nucleus is highly correlated with their gene densities."2005

    • Author(s)
      Hideyuki Tanabe
    • Journal Title

      Cytologia 70

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Inter- and intra-specific gene-density correlated radial chromosome territory arrangements are conserved in Old World monkeys2005

    • Author(s)
      Hideyuki Tanabe, Katrin Kupper, Takafumi Ishida, Michaela Neusser, Hiroshi Mizusawa
    • Journal Title

      Cytogenet Genome Research Volume 108

      Pages: 255-261

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Technical note."Radial distribution of interphase chromosome territories in the human lymphocyte nucleus is highly correlated with their gene densities2005

    • Author(s)
      Hideyuki Tanabe
    • Journal Title

      Cytologia Volume 70

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] 核内染色体の三次元FISH2004

    • Author(s)
      田辺秀之
    • Journal Title

      クロマチン・染色体実験プロトコール 実験医学別冊

      Pages: 148-158

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] [核/染色体]2.染色体テリトリー2004

    • Author(s)
      田辺秀之
    • Journal Title

      生体の科学(生命科学のNew Key Word) 55巻・5号

      Pages: 396-397

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Chromosomes within cell nucleus by 3D-FISH2004

    • Author(s)
      Hideyuki Tanabe
    • Journal Title

      Jikken-igaku bessatsu Protocols of experiments for chromatin and chromosomes

      Pages: 148-158

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] [Nucleus/Chromosome]2. Chromosome territories2004

    • Author(s)
      Hideyuki Tanabe
    • Journal Title

      Seitai no kagaku Volume 55, No.5

      Pages: 396-397

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] 核内染色体の三次元FISH2004

    • Author(s)
      田辺 秀之
    • Journal Title

      基礎から先端までのクロマチン・染色体実験プロトコール 実験医学別刷

      Pages: 148-158

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 染色体テリトリー2004

    • Author(s)
      田辺 秀之
    • Journal Title

      生体の科学(生命科学のNew Key Word) 55巻・5号

      Pages: 396-397

    • Related Report
      2004 Annual Research Report
  • [Presentation] 第28回日本分子生物学会年会2005

    • Author(s)
      田辺秀之、望月由子、天野美保、千葉磨玲、永田妙子
    • Organizer
      霊長類におけるヒト2番染色体ホモログの相対核内配置解析
    • Place of Presentation
      福岡ヤフードーム
    • Year and Date
      2005-12-08
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Presentation] Relative positioning of human chromosome 2 territories in primates2005

    • Author(s)
      Tanabe, H., Mochizuki, Y., Amano, M., Chiba, M., Nagata, T.
    • Organizer
      28^<th> annual meeting of the Molecular Biology Society of Japan
    • Place of Presentation
      Fukuoka
    • Year and Date
      2005-12-08
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Presentation] 3D-FISH法による霊長類ヒト2番染色体ホモログの相対核内配置について2005

    • Author(s)
      田辺秀之、望月由子、千葉磨玲
    • Organizer
      (財)染色体学会第56回年会
    • Place of Presentation
      弘前大学
    • Year and Date
      2005-10-10
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Presentation] Relative positioning of human chromosome 2 primate homologous chromosome territories by 3D-FISH2005

    • Author(s)
      Tanabe, H., Mochizuki, Y., Chiba, M.
    • Organizer
      56^<th> annual meeting of the Society of Chromosome Sciences
    • Place of Presentation
      Hirosaki Univ
    • Year and Date
      2005-10-10
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Presentation] 3D-FISH法による核内染色体テリトリーの放射状核内配置およひ相対核内配置解析2005

    • Author(s)
      田辺秀之
    • Organizer
      日本遺伝学会第77回大会
    • Place of Presentation
      国立オリンピック記念青少年総合センター(東京)
    • Year and Date
      2005-09-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Presentation] Interphase chromosome territory arrangements by 3D-FISH technique for radial and relative positioning2005

    • Author(s)
      Tanabe, H.
    • Organizer
      77^<th> annual meeting of the Genetic Society of Japan
    • Place of Presentation
      Tokyo
    • Year and Date
      2005-09-28
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Presentation] ヒトおよび霊長類リンパ芽球様細胞株における染色体テリトリーの相対核内配置解析2004

    • Author(s)
      田辺秀之、天野美保、千葉磨玲
    • Organizer
      第27回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2004-12-07
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Presentation] Relative positioning of chromosome territories in cell nuclei from human and primate lymphoblastoid cell lines2004

    • Author(s)
      Tanabe, H., Amano, M., Chiba, M.
    • Organizer
      27^<th> annual meeting of the Molecular Biology Society of Japan
    • Place of Presentation
      Kobe Port Island
    • Year and Date
      2004-12-07
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Presentation] 染色体テリトリーの3次元核内配置解析:放射状核内配置と相対核内配置について2004

    • Author(s)
      田辺秀之、天野美保、千葉磨玲
    • Organizer
      (財)染色体学会第55回年会
    • Place of Presentation
      岡山大学
    • Year and Date
      2004-11-03
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Presentation] Analyses of chromosome territory arrangements by 3D-FISH : radial distribution and relative positioning2004

    • Author(s)
      Tanabe, H., Amano, M., Chiba, M.
    • Organizer
      55^<th> annual meeting of the Society of Chromosome Sciences
    • Place of Presentation
      Okayama Univ
    • Year and Date
      2004-11-03
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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