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Analysis on Iron-Sulfur Cluster Biosynthesis in Oxygen-Evolving Photosynthetic Organism and on Assembly of Photosynthetic Complexes

Research Project

Project/Area Number 16570096
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

NAKAI Masato  Osaka University, Institute for Protein Research, Associate Professor, 蛋白質研究所, 助教授 (90222158)

Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2005: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 2004: ¥2,100,000 (Direct Cost: ¥2,100,000)
Keywordscyanobacteria / iron-sulfur cluster / iron-sulfur protein / cofactor / metal center / chloroplast / photosynthesis / biosynthesis / 鉄硫黄蛋白質 / CnFU / IscA / 足場蛋白質 / コファクター / らん藻 / 補欠分子族 / 立体構造 / 分子シャペロン / フェレドキシン
Research Abstract

IscA has been proposed to be involved in the iron-sulfur cluster biosynthesis as a so-called scaffold protein, on which a transient iron-sulfur cluster is assembled and from with the pre-assembled cluster is delivered to various substrate proteins. We have identified the IscA homolog to be localized to plastids, termed AtIscA-I, in Arabidopsis thaliana. The AtIscA-I protein was apparently constitutively expressed in all tissues analyzed in Arabidopsis. The AtIscA-I protein exists in the stroma as a soluble protein which tends to form a homo-dimer and can host a [2Fe-2S]-like cluster. Complete loss of the protein from plastids did not cause any significant defect either in normal plant growth or in biogenesis of major iron-sulfur proteins, indicating this protein is not essential or redundant for these functions. In contrast, loss of one of the three plastid-localized CnfU scaffold proteins, CnfU-V, caused significant reduction in the level of AtIscA-I. Hence, efficient biogenesis of At … More IscA-I scaffold requires function of another essential scaffold protein CnfU.
So-called scaffold proteins are vital in Fe-S cluster biosynthesis by providing an intermediate site for the assembly of Fe-S clusters. However, since no structural information on such scaffold proteins with bound Fe-S cluster intermediates is available, the structural basis of the core of Fe-S cluster biosynthesis remains poorly understood. We report the first Fe-S cluster-bound crystal structure of a scaffold protein, IscA, from Thermosynechococcus elongatus, which carries three strictly conserved cysteine residues. Surprisingly, one partially exposed [2Fe-2S] cluster is coordinated by two conformationally distinct IscA protomers, termed a and b, with asymmetric cysteinyl ligation by Cys37,Cys101l,Cys103 from a and Cys103 from b. In the crystal, two ab dimers form an unusual domain-swapped tetramer via central domains of b protomers. Together with additional biochemical data supporting its physiologically dimeric configuration, we propose that the unique asymmetric Fe-S cluster coordination and resulting distinct conformational stabilities between the two IscA protomers is central to the function of IscA-type Fe-S cluster biosynthetic scaffold. Less

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (17 results)

All 2006 2005 2004 Other

All Journal Article (12 results) Book (5 results)

  • [Journal Article] Identification and characterization of the Arabidopsis plastidic IscA homolog.2006

    • Author(s)
      Toshiki Yabe
    • Journal Title

      Biochem.Biophys.Res.Commun. 340

      Pages: 1047-1052

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Identification and characterization of the Arabidopsis plastidic IscA homolog.2006

    • Author(s)
      Toshiki Yabe, Masato Nakai
    • Journal Title

      Biochem.Biophys.Res.Commun. 340

      Pages: 1047-1052

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Arabidopsis chloroplastic NifU-like protein AtCnfU can act as an iron-sulfur cluster scaffold protein and is required for biogenesis of ferredoxin and photosystem I.2005

    • Author(s)
      Toshiki Yabe, Kozo Morimoto, Shingo Kikuchi, Kazuaki Nishio, Ichiro Terashima, Masato Nakai
    • Journal Title

      Photosynthesis : Fundamental Aspects to Global Perspectives (A.van der Est, D.Bruce, eds)

      Pages: 793-795

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Arabidopsis Chloroplastic NifU-like protein Can Act as an ron-Sulfur Cluster Scaffold protein, is Required for Biogenesis of Ferredoxin and Photosystem I2004

    • Author(s)
      Toshiki Yabe
    • Journal Title

      The Plant Cell 16/4

      Pages: 993-1007

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Arabidopsis Chloroplastic NifU-Like Protein CnfU, Which Can Act as an Iron-Sulfur Cluster Scaffold Protein, Is Required for Biogenesis of Ferredoxin and Photosystem2004

    • Author(s)
      Toshiki Yabe, Kozo Morimoto, Shingo Kikuchi, Kazuaki Nishio, Ichiro Terashima, Masato Nakai
    • Journal Title

      The Plant Cell 16

      Pages: 993-1007

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Maize Mutants Lacking Chloroplast FtsY Exhibit Pleiotropic Defects in the Biogenesis of Thylakoid Membranes.2004

    • Author(s)
      Yukari Asakura
    • Journal Title

      The Plant Cell 16

      Pages: 201-214

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The Arabidopsis chloroplastic NifU-like protein CnfU, which can act as an iron-sulfu cluster scaffold protein, is required for biogenesis of ferredoxin and photosystem I.2004

    • Author(s)
      Toshiki Yabe
    • Journal Title

      The Plant Cell 16

      Pages: 993-1007

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Yeast Nfslp is involved in thio-modification of both mitochondrial and Cytoplasmic tRNAs.2004

    • Author(s)
      Yumi Nakai
    • Journal Title

      Journal of Biological Chemistry 279

      Pages: 12363-12368

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Re-investigation of the requirement of cytosolic ATP for Mitochondrial protein import.2004

    • Author(s)
      Takeyoshi Asai
    • Journal Title

      Journal of Biological Chemistry 279

      Pages: 19464-19470

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 葉緑体の蛋白質輸送:チラコイド2004

    • Author(s)
      朝倉由香里
    • Journal Title

      蛋白質核酸酵素5月号増刊「細胞における蛋白質の一生:生成・成熟・輸送・管理・分解・病態」 49

      Pages: 922-925

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The Asymmetric IscA Homodimer with an Exposed [2Fe-2S] Cluster Suggests the Structural Basis of the Fe-S Cluster Biosynthetic Scaffold

    • Author(s)
      Kozo Morimoto
    • Journal Title

      Journal of Molecular Biology (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Asymmetric IscA Homodimer with an Exposed [2Fe-2S] Cluster Suggests the Structural Basis of the Fe-S Cluster Biosynthetic Scaffold

    • Author(s)
      Kozo Morimoto, Eiki Yamashita, Youhei Kondou, Soo Jae Lee, Fumio Arisaka, Tomitake Tsukihara, Masato Nakai
    • Journal Title

      Journal of Molecular Biology (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] 書名:Photosynthesis : Fundamental Aspects to Global Perspectives (A.Van der Est, D Bruce, eds),標題:The Arabidopsis chloroplastic NifU-like protein AtCnfU can act as an iron-sulfur cluster scaffold protein and is required for biogenesis of ferredoxin and photosystem I.2005

    • Author(s)
      Toshiki Yabe
    • Publisher
      Allen Press
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] 標題:解明されはじめた葉緑体タンパク質配送システムのユニークさ,書名:実験医学増刊「細胞内タンパク質の社会学」2005

    • Author(s)
      菊地 真吾
    • Publisher
      羊土社
    • Related Report
      2005 Annual Research Report
  • [Book] 標題:The Arabidopsis chloroplastic NifU-like protein AtCnfU can act as an iron-sulfur cluster scaffold protein and is required for biogenesis of ferredoxin and photosystem I.書名:Photosynthesis : Fundamental Aspects to Global Perspectives (A.van der Est, D.Bruce, eds),2005

    • Author(s)
      Toshiki Yabe
    • Publisher
      Allen Press
    • Related Report
      2005 Annual Research Report
  • [Book] 標題:Characterization of the preprotein translocon at the outer envelople membrane of chloroplasts by Blue-Native Page.書名:Photosynthesis : Fundamental Aspects to Global Perspectives(A.van der Est, D.Bruce, eds),2005

    • Author(s)
      Shingo Kikuchi
    • Publisher
      Allen Press
    • Related Report
      2005 Annual Research Report
  • [Book] 標題:Mechanism of temperature acclimation for photosynthesis in spinach leaves.書名:Photosynthesis : Fundamental Aspects to Global Perspectives(A.van der Est, D.Bruce, eds),2005

    • Author(s)
      Wataru Yamori
    • Publisher
      Allen Press
    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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