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Molecular Basis of light-dependent signal transduction in cells

Research Project

Project/Area Number 16H03280
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biomolecular chemistry
Research InstitutionTokyo Institute of Technology

Principal Investigator

Masuda Shinji  東京工業大学, バイオ研究基盤支援総合センター, 准教授 (30373369)

Co-Investigator(Kenkyū-buntansha) 塚谷 祐介  国立研究開発法人海洋研究開発機構, 海洋生命理工学研究開発センター, 研究員 (10421843)
Research Collaborator Kobayashi Atsuko  
Fujisawa Tomotsumi  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥18,850,000 (Direct Cost: ¥14,500,000、Indirect Cost: ¥4,350,000)
Fiscal Year 2018: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2017: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2016: ¥7,020,000 (Direct Cost: ¥5,400,000、Indirect Cost: ¥1,620,000)
Keywords光受容体 / BLUF / シグナル伝達 / シアノバクテリア / 光走性 / 線毛 / 紅色細菌
Outline of Final Research Achievements

Here we aimed to comprehensively understand the molecular mechanism of intracellular signal transduction by analyzing photoreceptor BLUF. Spectroscopic analysis revealed that although several BLUF proteins form radicals immediately after light irradiation, their rate constants differ, which may reflect differences of the growth light environments of the originated organisms. Biochemical and genetic analysis of BLUF photoreceptor PixD, which controls phototaxis of cyanobacteria, revealed that PixD is localized at specific positions of thylakoid or envelope membranes. Yeast two-hybrid experiments showed that PixE, which functions downstream of PixD, interacts with a specific protein involved in controllig pilus formation. Various mutants and multiple mutants of PixD nad PixE were prepared and their phototaxis phenotypes were analyzed in detail. From the obtained results, a model was constructed in which a PixD-dependent light signal moves cells to a certain direction.

Academic Significance and Societal Importance of the Research Achievements

細胞外からのシグナルは、タンパク質の構造情報に変換され、その後タンパク質間相互作用により細胞内を巡り、最終的に特定の生理機能を制御する。しかし、そのメカニズムを分子レベルで具体的に示した例は少ない。光受容体は光で容易にON/OFFすることができ、シグナル変換機構の詳細を調べる格好の材料である。本研究で明らかとなった光シグナル伝達の詳細は、タンパク質同士がどのように相互作用し、シグナルを一定方向へ伝達しているのか、といった一般的な問題の理解に重要なものとなる。また本研究で明らかとなったBLUFの光反応の化学的基盤は、フラビン分子の新しい光化学反応機構として注目を集めることが期待される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (25 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (1 results) Journal Article (11 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 11 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (12 results) (of which Int'l Joint Research: 7 results,  Invited: 4 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] インディアナ大学(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Time-Resolved Study of Interprotein Signaling Process of a Blue Light Sensor PapB-PapA Complex2019

    • Author(s)
      Nakasone, Y., Kikukawa, K., Masuda, S. and Terazima, M.
    • Journal Title

      J. Phys. Chem. B

      Volume: in press Issue: 15 Pages: 3210-3218

    • DOI

      10.1021/acs.jpcb.9b00196

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Significance of PGR5-dependent cyclic electron flow for optimizing the rate of ATP synthesis and consumption in Arabidopsis chloroplasts2019

    • Author(s)
      Sato, R, Kawashima, R., Trinh, M.D.L., Nakano, M., Nagai, T and Masuda, S.
    • Journal Title

      Photosynth. Res.

      Volume: 139 Issue: 1-3 Pages: 359-365

    • DOI

      10.1007/s11120-018-0533-9

    • NAID

      120006648420

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nitrite-reducing ability is related to growth inhibition by nitrite in Rhodobacter sphaeroides f. sp. denitrificans2018

    • Author(s)
      Shimizu, T., Horiguchi, K., Hatanaka, Y., Masud,a S., Shimada, K., Matsuura, K. and Haruta, S.
    • Journal Title

      Biosci Biotechnol Biochem.

      Volume: 82 Issue: 1 Pages: 148-151

    • DOI

      10.1080/09168451.2017.1412247

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Significance of accumulation of the alarmone (p)ppGpp in chloroplasts for controlling photosynthesis and metabolite balance during nitrogen starvation in Arabidopsis2018

    • Author(s)
      Honoki, R., Ono, S., Oikawa, A., Saito, K. and Masuda, S.
    • Journal Title

      Photosynth. Res.

      Volume: 135 Issue: 1-3 Pages: 299-308

    • DOI

      10.1007/s11120-017-0402-y

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of redox-active cysteine residues of persulfide-responsive transcriptional repressor SqrR.2017

    • Author(s)
      Shimizu, T., and Masuda, S.
    • Journal Title

      Commun. Integr. Biol.

      Volume: 10 Issue: 4 Pages: e1329786-e1329786

    • DOI

      10.1080/19420889.2017.1329786

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] FLUCTUATING-LIGHT-ACCLIMATION PROTEIN1, conserved in oxygenic phototrophs, regulates H+ homeostasis and non-photochemical quenching in chloroplasts.2017

    • Author(s)
      Sato R, Kono M, Harada K, Ohta H, Takaichi S, Masuda S
    • Journal Title

      Plant and Cell Physiology

      Volume: 58 Issue: 10 Pages: 1622-1630

    • DOI

      10.1093/pcp/pcx110

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Relative contributions of PGR5- and NDH-dependent photosystem I cyclic electron flow in the generation of a proton gradient in Arabidopsis chloroplasts2017

    • Author(s)
      Kawashima, R., Sato, R., Harada, K. and Masuda, S.
    • Journal Title

      Planta

      Volume: 246 Issue: 5 Pages: 1045-1050

    • DOI

      10.1007/s00425-017-2761-1

    • NAID

      120006582639

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Light-induced chromophore and protein responses and mechanical signal transduction of BLUF proteins2017

    • Author(s)
      Tomotsumi Fujisawa, Shinji Masuda
    • Journal Title

      Biophysical Reviews

      Volume: 10 Issue: 2 Pages: 327-337

    • DOI

      10.1007/s12551-017-0355-6

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sulfide-responsive transcriptional repressor SqrR functions as a master regulator of sulfide-dependent photosynthesis2017

    • Author(s)
      Shimizu, T., Shen, J., Fang, M., Zhang, Y., Hori, K., Trinidad, J.C., Bauer, C.E., Giedroc, D.P. and Masuda S.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 114 Issue: 9 Pages: 2355-2360

    • DOI

      10.1073/pnas.1614133114

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Phylogenetic analysis of proteins involved in the stringent response in plant cells2017

    • Author(s)
      Ito, D., Ihara, Y., Nishihara, H. and Masuda S.
    • Journal Title

      J. Plant Res.

      Volume: in press Issue: 4 Pages: 625-634

    • DOI

      10.1007/s10265-017-0922-8

    • NAID

      40021237083

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Genetics of the blue light-dependent signal cascade that controls phototaxis in the cyanobacterium Synechocystis sp. PCC6803.2017

    • Author(s)
      Sugimoto, Y., Nakamura, H., Ren, S., Hori, K. and Masuda S.
    • Journal Title

      Plant Cell Physiol.

      Volume: 58 Pages: 458-465

    • DOI

      10.1093/pcp/pcw218

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Persulfide-responsive transcriptional repressor SqrR regulates sulfide-dependent photosynthesis2018

    • Author(s)
      Shimizu, T., Shen, J, Fang, M., Zhang, Y., Hori, K., Trinidad, J.C., Bauer, C.E., Giedroc, D.P. and Masuda, S.
    • Organizer
      18th International Symposium of Phototrophic Prokaryotes
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Intracellular signaling by PixD and PixE controlling phototaxis in the cyanobacterium Synechocystis sp. PCC68032018

    • Author(s)
      Nakamura, H., Jakob, A., Ren, S, Sugimoto, Y., Wilde, A. and Masuda, S.
    • Organizer
      18th International Symposium of Phototrophic Prokaryotes
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Glycolipid and chlorophyll a biosynthesis are required for heterologous assembly of the type-I photochemical reaction center in purple bacteria2018

    • Author(s)
      Tsukatani, Y., Sugimoto, S., Azai, C., Harada, J., Mizoguchi, T., Tamiaki, H. and Masuda, S.
    • Organizer
      18th International Symposium of Phototrophic Prokaryotes
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Role of a new gene for the stringent response in Chlamydomonas reinharditii2018

    • Author(s)
      Ito, D. and Masuda, S.
    • Organizer
      ISPR Conference on Microbial Photosynthesis
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Impact of the stringent response for controlling photosynthesis and chloroplast function in photosynthetic microorganisms2018

    • Author(s)
      Masuda, S., Ito, D., Ihara, Y., Honoki, R. and Maekawa, M.
    • Organizer
      ISPR Conference on Microbial Photosynthesis
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] シアノバクテリアの光走性を制御するシグナル伝達タンパク質PixDおよびPixEの細胞内局在解析2017

    • Author(s)
      小林厚子、中村広志、杉本優希、増田真二
    • Organizer
      第58回日本植物生理学会年会
    • Place of Presentation
      鹿児島大学
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] 植物の栄養応答における葉緑体型緊縮応答の果たす役割2017

    • Author(s)
      増田真二
    • Organizer
      第3回 植物の栄養研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Identification and characterization of a novel chloroplast protein controlling non-photochemical quenching under fluctuating light2017

    • Author(s)
      Ryoichi Sato and Shinji Masuda
    • Organizer
      8th International Conference Photosynthesis and Hydrogen Energy Research for Sustainability
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Mechanism for H2S and reactive-sulfur-species recognition in cells2017

    • Author(s)
      Shinji Masuda and Takayuki Shimizu
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] シアノバクテリアSynechocystis sp. PCC6803の光走性を制御するPixDおよびPixEの細胞内シグナル伝達機構2017

    • Author(s)
      中村広志、Annik Jakob, 小林厚子、杉本優希、Annegret Wilde、増田真二
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Genetic, biochemical and biophysical studies on flavoprotein photoreceptors applicable for optogenetics2016

    • Author(s)
      増田真二
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Significance of light-induced electron transfer between a flavin molecule and an amino-acid side chain for controlling phototaxis in cyanobacteria2016

    • Author(s)
      Masuda, S.
    • Organizer
      4th Awaji International Workshop on “Electron Spin Science & Technology: Biological and Materials Science Oriented Applications” (5th AWEST 2017)
    • Place of Presentation
      Awaji Yumebutai Conference Center
    • Year and Date
      2016-06-19
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Patent(Industrial Property Rights)] 活性イオウ分子種に応答して遺伝子発現を制御する タンパク質2017

    • Inventor(s)
      増田真二、清水隆之
    • Industrial Property Rights Holder
      増田真二、清水隆之
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2017-015348
    • Filing Date
      2017-01-31
    • Related Report
      2016 Annual Research Report

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Published: 2016-04-21   Modified: 2023-12-25  

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