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Autonomous theranostics of miRNA from tumor using DNA computing

Research Project

Project/Area Number 16H06043
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Analytical chemistry
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

Kawano Ryuji  東京農工大学, 工学(系)研究科(研究院), 准教授 (90401702)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥25,220,000 (Direct Cost: ¥19,400,000、Indirect Cost: ¥5,820,000)
Fiscal Year 2018: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2017: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2016: ¥7,930,000 (Direct Cost: ¥6,100,000、Indirect Cost: ¥1,830,000)
Keywordsナノポア / DNAコンピューティング / microRNA / リキッドバイオプシー / マイクロデバイス / 分析化学 / 生体生命情報学 / バイオテクノロジー / マイクロ・ナノデバイス / 脂質二分子膜 / 癌診断 / 分析科学 / 一分子計測 / ロジックゲート
Outline of Final Research Achievements

In this project, miRNAs from tumor cells are recognized by DNA computation technology and the nanopores. The purpose of this study is to detect the results of recognition by the nanopore measurement combined with DNA computation. This study was originally planned as a four-year project, but it was shifted to the basic research in the fourth year because the research progressed more than as we planned initially. The following is a summary of the main results obtained during the three years of research. The nanopore measurement using microdroplets is developed in a microdevice, and we succeeded in label-free and rapid decoding of the output molecule. We detected two different miRNAs with enhanced expression from small cell lung cancer as AND gates for rapid detection. After that, we also detected five different miRNAs from cholangiocarcinoma in body fluid from cancer patients. These results were published in several publications including Analytical Chemistry in the ACS.

Academic Significance and Societal Importance of the Research Achievements

本研究では二つの学術的意義と一つの社会的意義があると考えている。学術的意義の一つ目は、これまで主に情報学や数学的観点から研究が進められてきたDNA演算技術を腫瘍細胞由来のmiRNA検出に応用した点である。miRNAは複数種類のRNAが発現上昇低下するといった複雑なパターンで変動する。この変動をDNA演算技術により迅速検出を可能とした。二つ目の学術的意義は、このDNA演算で出力される核酸分子を非標識かつ電気的に検出可能としたことである。最後に社会的意義としては、実際の癌患者の血液から癌腫瘍由来miRNAの検出に成功したことである。これによりコンセプトの実証に留まらず、社会実装を目指す。

Report

(4 results)
  • 2019 Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (24 results)

All 2019 2018 2017 2016 Other

All Journal Article (8 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 7 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (10 results) (of which Int'l Joint Research: 8 results,  Invited: 4 results) Book (3 results) Remarks (3 results)

  • [Journal Article] Spatially Resolved Chemical Detection with a Nanoneedle-Probe-Supported Biological Nanopore2019

    • Author(s)
      Shoji Kan、Kawano Ryuji、White Ryan J.
    • Journal Title

      ACS Nano

      Volume: 13 Pages: 2606-2614

    • DOI

      10.1021/acsnano.8b09667

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] DNA Logic Operation with Nanopore Decoding To Recognize MicroRNA Patterns in Small Cell Lung Cancer2018

    • Author(s)
      Hiratani Moe、Kawano Ryuji
    • Journal Title

      Analytical Chemistry

      Volume: 90 Issue: 14 Pages: 8531-8537

    • DOI

      10.1021/acs.analchem.8b01586

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Microfluidic Formation of Double-Stacked Planar Bilayer Lipid Membranes by Controlling the Water-Oil Interface2018

    • Author(s)
      Shoji Kan、Kawano Ryuji
    • Journal Title

      Micromachines

      Volume: 9 Issue: 5 Pages: 253-253

    • DOI

      10.3390/mi9050253

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nanopore Decoding of Oligonucleotides in DNA Computing2018

    • Author(s)
      Kawano Ryuji
    • Journal Title

      Biotechnology Journal

      Volume: 13 Issue: 12 Pages: 1800091-1800091

    • DOI

      10.1002/biot.201800091

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Amplification and quantification of an antisense oligonucleotide from target microRNA using programmable DNA and a biological nanopore2017

    • Author(s)
      M. Hiratani, M. Ohara, R. Kawano
    • Journal Title

      Analytical Chemistry

      Volume: 89 Issue: 4 Pages: 2312-2317

    • DOI

      10.1021/acs.analchem.6b03830

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Analysis of Pore Formation and Protein Translocation Using Large Biological Nanopores.2017

    • Author(s)
      Watanabe H, Gubbiotti A, Chinappi M, Takai N, Tanaka K, Tsumoto K and Kawano R
    • Journal Title

      Anal. Chem.

      Volume: 89 Issue: 21 Pages: 11269-11277

    • DOI

      10.1021/acs.analchem.7b01550

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Nanopore Logic Operation with DNA to RNA Transcription in a Droplet System2017

    • Author(s)
      M. Ohara, M. Takinoue, R. Kawano
    • Journal Title

      ACS Synthetic Biology

      Volume: 印刷中 Issue: 7 Pages: 1427-1432

    • DOI

      10.1021/acssynbio.7b00101

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] ナノポアを用いたマイクロRNAの迅速診断技術と応用展開2017

    • Author(s)
      保皓大、平谷萌恵、川野竜司
    • Journal Title

      PHARMSTAGE

      Volume: 17 Pages: 62-65

    • NAID

      40021190737

    • Related Report
      2017 Annual Research Report
  • [Presentation] Stable Lipid Bilayer Formation using Microfabrication and Its Applications2019

    • Author(s)
      Ryuji Kawano
    • Organizer
      Nanopore Research Retreat@Boston
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] SIMPLE FABRICATION OF A SOLID-STATE NANOPORE2018

    • Author(s)
      Natsumi Takai, Masaki Matsushita, Kan Shoji, Tei Maki and Ryuji Kawano
    • Organizer
      The 22th International Conference on Miniaturized Systems for Chemistry and Life Sciences
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CONSTRUCTION OF PROGRAMMABLE NANOPORE USING β-SHEET PEPTIDES2018

    • Author(s)
      Keisuke Shimizu, Naoki Saigo, Shungo Sakashita, Yoshio Hamada, Kenji Usui, Batsaikhan Mijiddorj, Izuru Kawamura and Ryuji Kawano
    • Organizer
      The 22th International Conference on Miniaturized Systems for Chemistry and Life Sciences
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] MicroRNA Pattern Recognition for Bile Duct Cancer Using Programmable DNA and Biological Nanopore2017

    • Author(s)
      M. Hiratani and R. Kawano
    • Organizer
      MicroTAS2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] MicroRNA pattern recognition for cholangiocarcinoma using barcode-like DNA and biological nanopore2017

    • Author(s)
      M. Hiratani and R. Kawano
    • Organizer
      2nd Japan-Korea International Symposium on Cyborgnics: Integration between cell and electronics
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 人工細胞膜システムを用いたナノ・マイクロ化学分析2017

    • Author(s)
      川野竜司
    • Organizer
      第66回日本分析化学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 人工細胞膜システムの医療診断技術への展開2017

    • Author(s)
      川野竜司
    • Organizer
      2017年電気化学秋季大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] A Single Molecular Logic Gate: “AND” Operation Using DNA Immobilized in Biological Nanopore2016

    • Author(s)
      M. Ohara and R. Kawano
    • Organizer
      MicroTAS2016
    • Place of Presentation
      Dublin, Ireland
    • Year and Date
      2016-10-09
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Recognition of microRNA Expression Pattern in Serum Using Programmable Droplet System for Cancer Diagnosis2016

    • Author(s)
      M. Hiratani, M. Ohara and R. Kawano
    • Organizer
      MicroTAS2016
    • Place of Presentation
      Dublin, Ireland
    • Year and Date
      2016-10-09
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nanopore sensing with a stable lipid bilayer in microfabricated devices2016

    • Author(s)
      R. Kawano
    • Organizer
      PRiME2016
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      2016-10-02
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Book] 日本生物物理学会誌2018

    • Author(s)
      川野竜司
    • Total Pages
      2
    • Publisher
      日本生物物理学会
    • Related Report
      2018 Annual Research Report
  • [Book] リキッドバイオプシー―体液中腫瘍マーカーの検出・解析技術―2017

    • Author(s)
      落谷孝広(分担執筆:保皓大、平谷萌恵、川野竜司)
    • Total Pages
      288
    • Publisher
      シーエムシー出版
    • ISBN
      4781312594
    • Related Report
      2017 Annual Research Report
  • [Book] PharmStage2017

    • Author(s)
      保皓大、平谷萌恵、川野竜司
    • Publisher
      情報技術協会
    • Related Report
      2016 Annual Research Report
  • [Remarks] 東京農工大学 川野研究室

    • URL

      http://web.tuat.ac.jp/~rjkawano/index.html

    • Related Report
      2018 Annual Research Report
  • [Remarks] 東京農工大学 川野研究室ホームページ

    • URL

      http://web.tuat.ac.jp/~rjkawano/index.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 東京農工大学 川野研究室

    • URL

      http://web.tuat.ac.jp/~rjkawano/

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2016-04-21   Modified: 2023-01-30  

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