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先進ゲノム解析研究推進プラットフォーム

Research Project

Project/Area Number 16H06279
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources

Allocation TypeSingle-year Grants
Research InstitutionNational Institute of Genetics

Principal Investigator

小原 雄治  国立遺伝学研究所, 先端ゲノミクス推進センター, 特任教授 (70135292)

Co-Investigator(Kenkyū-buntansha) 加藤 和人  大阪大学, 大学院医学系研究科, 教授 (10202011)
川嶋 実苗  国立研究開発法人科学技術振興機構, バイオサイエンスデータベースセンター, 研究員 (00396706)
豊田 敦  国立遺伝学研究所, 生命情報研究センター, 特任教授 (10267495)
鈴木 穣  東京大学, 大学院新領域創成科学研究科, 教授 (40323646)
三井 純  東京大学, 医学部附属病院, 特任准教授 (70579862)
林 哲也  九州大学, 大学院医学研究院, 教授 (10173014)
時野 隆至  札幌医科大学, 医学部, 教授 (40202197)
黒川 顕  国立遺伝学研究所, 生命情報研究センター, 教授 (20343246)
中村 保一  国立遺伝学研究所, 生命情報研究センター, 教授 (60370920)
野口 英樹  大学共同利用機関法人情報・システム研究機構(機構本部施設等), データサイエンス共同利用基盤施設, 特任教授 (50333349)
高木 利久  東京大学, 大学院理学系研究科, 教授 (30110836)
岩崎 渉  東京大学, 大学院理学系研究科, 准教授 (50545019)
森下 真一  東京大学, 大学院新領域創成科学研究科, 教授 (90292854)
浅井 潔  東京大学, 大学院新領域創成科学研究科, 教授 (30356357)
笠原 雅弘  東京大学, 大学院新領域創成科学研究科, 講師 (60376605)
伊藤 武彦  東京工業大学, 生命理工学院, 教授 (90501106)
山田 拓司  東京工業大学, 生命理工学院, 准教授 (10437262)
小椋 義俊  九州大学, 大学院医学研究院, 准教授 (40363585)
久原 哲  九州大学, 大学院農学研究院, 名誉教授 (00153320)
高橋 弘喜  千葉大学, 真菌医学研究センター, 准教授 (60548460)
瀬々 潤  国立研究開発法人産業技術総合研究所, 人工知能研究センター, 研究チーム長 (40361539)
榊原 康文  慶應義塾大学, 理工学部, 教授 (10287427)
Project Period (FY) 2016 – 2021
Project Status Granted (Fiscal Year 2020)
Budget Amount *help
¥7,698,340,000 (Direct Cost: ¥5,921,800,000、Indirect Cost: ¥1,776,540,000)
Fiscal Year 2018: ¥1,282,970,000 (Direct Cost: ¥986,900,000、Indirect Cost: ¥296,070,000)
Fiscal Year 2017: ¥1,282,970,000 (Direct Cost: ¥986,900,000、Indirect Cost: ¥296,070,000)
Fiscal Year 2016: ¥1,283,490,000 (Direct Cost: ¥987,300,000、Indirect Cost: ¥296,190,000)
Keywords次世代DNAシーケンサー / 新規ゲノム配列決定 / リシーケンシング / エピゲノム / RNA-Seq / 1細胞解析 / メタゲノム解析 / スーパーコンピューター / ゲノムアッセンブル / ゲノム多型 / メタゲノム / ゲノムアノテーション
Outline of Annual Research Achievements

①総括支援活動では、応募の機会増加の要望に応えるため今年度から年2回の公募とした。その結果、合計466の応募課題があり、207課題(44%)を採択した。コロナ禍の影響の中、昨年度より応募数は100件近く増加したが、支援内容の精査や支援経費の限度額設定等により、40%超の採択率を維持した。審査委員はすべてプラットフォーム外の専門家とし、評価が同程度の場合は若手、女性、少額科研費からの課題、初めての応募課題を優先した。支援課題は科研費生物系のほぼすべての分野に渡っており、支援の成果を含む論文として2020年度に161報が発表された。この中には「単核貪食細胞系の分化における遺伝子発現制御機構の包括的解明」(Nature Immunol.)、「キンギョの変異体の表現型多様性を作り上げる分子機構の理解」(Current Biol.)、「植物二次代謝経路のゲノム進化に学ぶ生合成デザイン」(Nature Comm.)など広い分野でのレベルの高い成果が含まれている。拡大班会議や情報解析講習会はオンサイト開催が必要なためにコロナ禍の中で見送ったが、WEB開催としたヒトゲノム研究倫理を考える会は5回開催し、各回約500名が参加した。
②大規模配列解析拠点ネットワーク支援活動においては、最先端技術を支援に提供するとともに、染色体レベルの高精度ゲノム配列決定、シングルセル・空間遺伝子発現解析等の支援技術高度化を進めた。
③高度情報解析支援ネットワーク活動では、支援から浮かび上がった課題を解決するソフトウェアの開発を進め、実際の課題への適用を進めた。2020年度には、超高速相同性検索ソフトウェアPZLASTの開発、Hi-Cデータを使ったゲノムアセンブリソフトウエア、ロングリードシミュレータPBSIM2の開発などを進め、②と合わせて24報の論文を発表した。

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

・応募の機会増加が懸案であったが、今年度から年2回の公募を行うことができた。前年度に比べ応募数は100件近く増加し、また支援希望内容も拡大しているが、経費上限の設定や支援内容精査などにより採択率を40%以上に維持することができた。科研費のほぼ全種目から課題採択できており、同程度の評価の場合は若手・女性・少額科研費からの課題及び新たな申請者を優先するなどの措置をとり、多様な課題への支援ができた。選考の過程では、コロナ禍のために審査委員会や支援候補課題のヒアリングなどすべてオンラインで行ない、結果的に双方の負担を減らすことができた。
・コロナ禍のために試料送付の遅れや、支援拠点側の出勤抑制などが見られ、支援の遅れも生じたが、おおむね期間内に支援を完了できた。支援依頼者から要望が高かった拡大班会議と情報解析講習会はオンサイト開催が必要なために見送らざるを得なかったが、支援依頼者が自力で解析できるように解析パイプライン整備を進め支援に供した。
・支援成果を含む論文発表は2020年度は161報と順調に増加した。支援技術の高度化のための活動も大規模DNAシーケンシング支援、高度情報解析支援共に進めることができ、高度化の論文は24報発表した。また情報解析講習会内容をまとめた書籍を刊行し、好評を得ている。
・これらの活動を、当初計画通り国立遺伝学研究所を中核機関として、参加する班員が所属する主な機関を連携機関とする連携ネットワークを形成して進めることができた。

Strategy for Future Research Activity

最終年度になるので、次期体制につながるように以下の方策を進める
・最先端の技術の提供のために、支援拠点における支援技術の高度化を引き続き進める。ゲノム解析は技術進展のスピードが特に速く、2-3年で解析手法が様変わりするために、支援に確実に使われる場合は、最終年度であっても支援機器・技術の整備を工夫して進めていく。
・支援課題の採択率は、現状は予算の制限から40%台にとどまっており、より多い課題の支援が求められる。現状では、各支援課題の支援経費の上限を設けて、これを超す分は経費負担を求める形にすることで、ようやくこの採択率になっている。解析内容を精査する効果はあるが、一方でゲノム解析においては一定規模以上で支援しないと意味のある結果が出ないことも多く、若手をはじめ、経費面で敷居が高くなるケースもある。そのためにも技術高度化により、より効果的な解析技術の整備やコスト削減を図っていく必要がある。他方で、ピーク研究支援を考慮して、よりタイムリーな支援のために、支援経費自己負担で随時応募可能とする制度を整備し、ピーク作りとすそ野拡大のバランスを図る。
・大量データ解析の支援要望はますます増加していることから、解析パイプラインの整備とともに、情報解析講習会の開催を継続拡充する。また、ゲノム解析の感覚を研究者コミュニティに共有してもらうためにも、拡大班会議は重要であり、今後工夫して進めていきたい。また、実際のデータをもとに高度情報解析を行える稀な場であることから、若手の参画やon the job trainingなどを通じてインフォマティックス人材育成を継続する。また、支援で得られたデータの適切な共有/公開を進める。このために支援で得られたヒトゲノムデータはNBDCヒトゲノムDBへの格納が確実になるようにする。ヒトゲノム以外のDNA配列データはDDBJへまず格納し、そこからデータ回収してもらう方式により確実なデータ格納を進める。

Report

(7 results)
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report   Interim Assessment Report ( PDF )   Interim Assessment (Comments) ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report

Research Products

(2142 results)

All 2021 2020 2019 2018 2017 2016 Other

All Int'l Joint Research (30 results) Journal Article (581 results) (of which Int'l Joint Research: 194 results,  Peer Reviewed: 559 results,  Open Access: 493 results,  Acknowledgement Compliant: 25 results) Presentation (1363 results) (of which Int'l Joint Research: 417 results,  Invited: 493 results) Book (65 results) Remarks (95 results) Patent(Industrial Property Rights) (6 results) (of which Overseas: 3 results) Funded Workshop (2 results)

  • [Int'l Joint Research] Baylor College of Medicine/NIH/Duke University School of Medicine(U.S.A.)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] The University of Queensland/Australian Institute of Marine Science/Commonwealth Scientific and Industrial Research Organisation (CSIRO)(Australia)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Universitas Airlangga/Universitas Muhammadiyah Surabaya/University of Indonesia(Indonesia)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Max Planck Institute of Molecular Cell Biology and Genetics/Helmholtz Center for Infection Research (HZI)/University of Wurzburg(Germany)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] MRC London Institute of Medical Sciences (LMS)/University of Cambridge/University of Nottingham(UNITED KINGDOM)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] City University of New York/National Cancer Institute/The Jackson Laboratory for Genomic Medicine(USA)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] European Molecular Biology Laboratory/German Cancer Research Center/Max Delbruck Centre for Molecular Medicine(Germany)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] CHU de Toulouse/Institut Pasteur/Université de Toulouse(France)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Chulalongkorn University/Bangkok Medical Center/Rajavithi Hospital(Thailand)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] CSIRO/Curtin University/University of Technology(Australia)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Baylor College of Medicine/City University of New York/Fred Hutchinson Cancer Research Center(米国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] European Molecular Biology Laboratory/German Cancer Research Center/Heinrich Heine University(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Universitas Airlangga/University of Indonesia/Merauke City General Hospital(インドネシア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of Trento/University of Turin/European Institute of Oncology(イタリア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of Oxford/University of Cambridge/John Innes Centre(英国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] コールドスプリングハーバー研究所/エネルギー省連合ゲノム研究所/ヴァンダービルト大学(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] マックスプランク研究所/ミュンスター大学/オスナブリュック大学(ドイツ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] ケンブリッジ大学/オックスフォード大学(英国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] モナシュ大学/メルボルン大学(オーストラリア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] チュラーロンコーン大学/マヒドン大学(タイ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] USDepartment of Energy Joint Genome Institute/University of California at Berkley/National Cancer Institute(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University of Calgary/University of Western Ontario(Canada)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Sam Ratulangi University(Indonesia)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Mahidol University(Thailand)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Radboud University(オランダ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Regulatory mechanism underlying plant tip growth inferred from conchocelis growth of the red alga Neopyropia yezoensis2021

    • Author(s)
      Mizuho Shimada, Nagisa Takada, Yuji Hiwatashi
    • Journal Title

      Algal Resources

    • Description
      in press
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Liquid Biopsy Cell-free DNA Biomarkers in Patients With Oligometastatic Colorectal Cancer Treated by Ablative Radiotherapy2021

    • Author(s)
      MASAKI NAKAMURA, SHUN-ICHIRO KAGEYAMA, MASAHIDE SEKI, AYAKO SUZUKI, MASAYUKI OKUMURA, HIDEHIRO HOJO, ATSUSHI MOTEGI, TETSUO AKIMOTO
    • Journal Title

      Anticancer Research

      Volume: 41 Pages: 829-834

    • DOI

      10.21873/anticanres.14835

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Decoding the transcriptome of pre-granulosa cells during the formation of primordial follicles in the mouse2021

    • Author(s)
      Kurumi Fukuda, Masafumi Muraoka, Yuzuru Kato, Yumiko Saga
    • Journal Title

      Biology of Reproduction

      Volume: - Pages: 179-191

    • DOI

      10.1093/biolre/ioab065

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative analysis using the draft genome sequence of California poppy (Eschscholzia californica) for exploring the candidate genes involved in benzylisoquinoline alkaloid biosynthesis2021

    • Author(s)
      Yasuyuki Yamada, Hideki Hirakawa, Kentaro Hori, Yohei Minakuchi, Atsushi Toyoda, Nobukazu Shitan, Fumihiko Sato
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 85 Pages: 851-859

    • DOI

      10.1093/bbb/zbaa091

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population2021

    • Author(s)
      Satomi Mitsuhashi, Martin C. Frith, Naomichi Matsumoto
    • Journal Title

      BMC Medical Genomics

      Volume: 14 Pages: 17-17

    • DOI

      10.1186/s12920-020-00853-3

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] MCM10 compensates for Myc-induced DNA replication stress in breast cancer stem-like cells2021

    • Author(s)
      Takahiko Murayama, Yasuto Takeuchi, Kaoru Yamawaki, Toyoaki Natsume, Mengjiao Li, Rojas-Chaverra N. Marcela, Yutaka Suzuki, Masato T. Kanemaki, Koji Okamoto, Arinobu Tojo, Noriko Gotoh, et al.
    • Journal Title

      Cancer Science.

      Volume: 112 Pages: 1209-1224

    • DOI

      10.1111/cas.14776

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biological significance of KRAS mutant allele expression in ovarian endometriosis2021

    • Author(s)
      Nozomi Yachida, Kosuke Yoshihara, Kazuaki Suda, Hirofumi Nakaoka, Haruka Ueda, Kentaro Sugino, Ryo Tamura, Tatsuya Ishiguro, Hiroaki Kase, Teiichi Motoyama, Takayuki Enomoto, et al.
    • Journal Title

      Cancer Science

      Volume: 112 Pages: 2020-2032

    • DOI

      10.1111/cas.14871

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] MeCP2 controls neural stem cell fate specification through miR-199a-mediated inhibition of BMP- Smad signaling2021

    • Author(s)
      Nakashima H., Tsujimura K., Irie K., Imamura T., Trujillo CA., Ishizu M., Uesaka M., Pan M., Noguchi H., Okata K., Aoyagi K., Ando-Noda T., Okano H., Muotri AR., Nakashima K.
    • Journal Title

      Cell Reports

    • Description
      in press
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breast2021

    • Author(s)
      Satoi Nagasawa, Yuta Kuze, Ichiro Maeda, Yasuyuki Kojima, Ai Motoyoshi, Tatsuya Onishi, Hibiki Seino, Ayako Suzuki, Masahide Seki, Eisuke Inoue, Koichiro Tsugawa, Tomohiko Ohta, Yutaka Suzuki, et al.
    • Journal Title

      Commun Biol.

      Volume: 4

    • DOI

      10.1038/s42003-021-01959-9

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A corset function of exoskeletal ECM promotes body elongation in Drosophila2021

    • Author(s)
      Reiko Tajiri, Haruhiko Fujiwara, Tetsuya Kojima
    • Journal Title

      Communications Biology

      Volume: 4 Pages: 1-13

    • DOI

      10.1038/s42003-020-01630-9

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Collective nuclear behavior shapes bilateral nuclear symmetry for subsequent left-right asymmetric morphogenesis in Drosophila2021

    • Author(s)
      Dongsun Shin, Mitsutoshi Nakamura, Yoshitaka Morishita, Mototsugu Eiraku, Tomoko Yamakawa, Takeshi Sasamura, Masakazu Akiyama, Mikiko Inaki, Kenji Matsuno
    • Journal Title

      Development

    • Description
      in press
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing2021

    • Author(s)
      Hitomi Takei, Kenta Shirasawa, Kosuke Kuwabara, Atsushi Toyoda, Yuma Matsuzawa, Shinji Iioka, Tohru Ariizumi
    • Journal Title

      DNA Research

      Volume: 28

    • DOI

      10.1093/dnares/dsaa029

    • NAID

      120007186927

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits.2021

    • Author(s)
      Hideki Hirakawa, Atsushi Toyoda, Takehiko Itoh, Yutaka Suzuki, Atsushi J. Nagano, Suguru Sugiyama, Yasuyuki Onodera
    • Journal Title

      DNA Research

    • Description
      in press
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ezh1 regulates expression of Cpg15/Neuritin in mouse cortical neurons2021

    • Author(s)
      Shun Utsunomiya, Yusuke Kishi, Masafumi Tsuboi, Daichi Kawaguchi, Yukiko Gotoh, Manabu Abe, Kenji Sakimura, Kazuma Maeda, Hiroshi Takemoto
    • Journal Title

      DD&T

      Volume: - Issue: 2 Pages: 55-65

    • DOI

      10.5582/ddt.2021.01017

    • NAID

      130008037031

    • ISSN
      1881-7831, 1881-784X
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of histone H3 lysine 4 and 36 tri-methylation in Brassica rapa L.2021

    • Author(s)
      Mehraj H, Takahashi S, Miyaji N, Akter A, Suzuki Y, Seki M, Dennis ES, Fujimoto R
    • Journal Title

      Frontiers in Plant Science

      Volume: 12 Pages: 659634-659634

    • DOI

      10.3389/fpls.2021.659634

    • NAID

      120007099006

    • Description
      in press
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Institutional and Social Issues Surrounding Genetic Counselors in Japan : Current Challenges and Implications for the Global Community2021

    • Author(s)
      Yayoi Aizawa, Atsushi Watanabe, Kazuto Kato
    • Journal Title

      Frontiers in Genetics

      Volume: 12

    • DOI

      10.3389/fgene.2021.646177

    • NAID

      120007018667

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Frequent Tumor Burden Monitoring of Esophageal Squamous Cell Carcinoma With Circulating Tumor DNA Using Individually Designed Digital Polymerase Chain Reaction2021

    • Author(s)
      Takeshi Iwaya, Fumitaka Endo, Fumiaki Takahashi, Takashi Tokino, Yasushi Sasaki, Satoshi S. Nishizuka
    • Journal Title

      Gastroenterology

      Volume: 160 Pages: 463-465

    • DOI

      10.1053/j.gastro.2020.09.035

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effects of mitoTALENs-Directed Double-Strand Breaks on Plant Mitochondrial Genomes2021

    • Author(s)
      Shin-ichi Arimura
    • Journal Title

      Genes

      Volume: 12 Pages: 153-153

    • DOI

      10.3390/genes12020153

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer2021

    • Author(s)
      Miho Oka, Liu Xu, Toshihiro Suzuki, Toshiaki Yoshikawa, Hiromi Sakamoto, Hayato Uemura, Akiyasu C. Yoshizawa, Yutaka Suzuki, Tetsuya Nakatsura, Yasushi Ishihama, Ayako Suzuki, Masahide Seki
    • Journal Title

      Genome Biology

      Volume: 22(1):9 Pages: 1-9

    • DOI

      10.1186/s13059-020-02240-8

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells2021

    • Author(s)
      Satomi Mitsuhashi, So Nakagawa, Mitsuru Sasaki-Honda, Hidetoshi Sakurai, Martin C Frith, Hiroaki Mitsuhashi
    • Journal Title

      Hum Mol Genet

      Volume: in press Pages: 552-563

    • DOI

      10.1093/hmg/ddab063

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Setdla plays pivotal roles for the survival and proliferation of retinal progenitors via histone modifications of Uhrfl2021

    • Author(s)
      Xiaoyue Deng, Toshiro Iwagawa, Masaya Fukushima, Yutaka Suzuki3, and Sumiko Watanabe
    • Journal Title

      IOVS

    • Description
      in press
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      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic analyses of a secondary poroma and trichoblastoma in a HRAS-mutated sebaceous nevus2021

    • Author(s)
      Minowa, Tomoyuki ; Kamiya, Takafumi ; Hida, Tokimasa ; Okura, Masae ; Kato, Junji ; Idogawa, Masashi ; Tange, Shoichiro ; Hirano, Tomomi ; Tokino, Takashi ; Uhara, Hisashi,
    • Journal Title

      The Journal of Dermatology

      Volume: 48 Pages: 1268-1272

    • DOI

      10.1111/1346-8138.15919

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] KDM2B is involved in the epigenetic regulation of TGF-β-induced epithelial-mesenchymal transition in lung and pancreatic cancer cell lines2021

    • Author(s)
      Sasithorn Wanna-Udom, Minoru Terashima, Kusuma Suphakhong, Akihiko Ishimura, Takahisa Takino, Takeshi Suzuki
    • Journal Title

      Journal of Biological Chemistry

      Volume: 296 Pages: 100213-100213

    • DOI

      10.1074/jbc.ra120.015502

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Centriole and PCM cooperatively recruit CEP192 to spindle poles to promote bipolar spindle assembly2021

    • Author(s)
      Takumi Chinen, Kaho Yamazaki, Kaho Hashimoto, Ken Fujii, Koki Watanabe, Yutaka Takeda, Shohei Yamamoto, Yuka Nozaki, Yuki Tsuchiya, Daisuke Takao, Daiju Kitagawa
    • Journal Title

      Journal of Cell Biology

      Volume: 220

    • DOI

      10.1083/jcb.202006085

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Serum Helicobacter pylori antibody reactivity in seven Asian countries using an automated latex aggregation turbidity assay2021

    • Author(s)
      Junko Akada, Evariste Tshibangu-Kabamba, Vo Phuoc Tuan, Shusaku Kurogi, Yuichi Matsuo, Shamshul Ansari, Dalla Doohan, Bui Hoang Phuc, Phawinee Subsomwong, Yoshio Yamaoka, et al.
    • Journal Title

      Journal of Gastroenterology and Hepatology

      Volume: - Pages: 1-10

    • DOI

      10.1111/jgh.15467

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] A global phylogenetic analysis of Japanese tonsil-derived Epstein-Barr virus strains by using viral whole-genome cloning and long-read sequencing2021

    • Author(s)
      Misako Yajima, Risako Kakuta, Yutaro Saito, Shiori Kitaya, Atsushi Toyoda, Kazufumi Ikuta, Jun Yasuda, Nobuo Ohta, and Teru Kanda
    • Journal Title

      Journal of General Virology

      Volume: 102

    • DOI

      10.1099/jgv.0.001549

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      2020 Annual Research Report
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  • [Journal Article] オオカミやヤマイヌと呼ばれたシーボルトが残したニホンオオカミ標本の謎2021

    • Author(s)
      石黒直隆、松村秀一、寺井洋平、本郷一美
    • Journal Title

      Journal of the Japan Veterinary Medical Association

    • Description
      in press
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      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency2021

    • Author(s)
      Yukako Katsura, Toshimichi Ikemura, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Mitsuaki Ogata, Ikuo Miura, Kennosuke Wada, Yoshiko Wada, Yoko Satta
    • Journal Title

      Life Science Alliance

      Volume: -

    • DOI

      10.26508/lsa.202000905

    • NAID

      120007153083

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Z-ring-associated proteins regulate clustering of the replication terminus-binding protein ZapT in Caulobacter Crescentus.2021

    • Author(s)
      Ozaki Shogo, Wakasugi Yasutaka, Tsutomu Katayama
    • Journal Title

      mBio

      Volume: 12 Pages: 1-17

    • DOI

      10.1128/mbio.02196-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Candidatus Mesenet longicola : Novel Endosymbionts of Brontispa longissima that Induce Cytoplasmic Incompatibility2021

    • Author(s)
      Shun-ichiro Takano, Yasuhiro Gotoh, Tetsuya Hayashi
    • Journal Title

      Microbial Ecology

      Volume: -

    • DOI

      10.1007/s00248-021-01686-y

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan2021

    • Author(s)
      Koki Yoshida, Ruixuan Zhang, Kimberly G. Garcia, Hisashi Endo, Yasuhiro Gotoh, Tetsuya Hayashi, Masaharu Takemura, Hiroyuki Ogata
    • Journal Title

      Microbiology Resource Announcements

      Volume: 10

    • DOI

      10.1128/mra.01323-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes2021

    • Author(s)
      Kazuki Hirota, Masa-aki Yoshida, Takehiko Itoh, Atsushi Toyoda, Davin H. E. Setiamarga
    • Journal Title

      Mitochondrial DNA Part B : Resources

    • Description
      in press
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Association analysis of repetitive elements and R-loop formation across species2021

    • Author(s)
      Chao Zeng, Masahiro Onoguchi, Michiaki Hamada
    • Journal Title

      Mobile DNA

      Volume: 12 Pages: 3-3

    • DOI

      10.1186/s13100-021-00231-5

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation2021

    • Author(s)
      Haruna Nakamura, Mitsuto Aibara, Rei Kajitani, Hillary D J Mrosso, Semvua I Mzighani, Atsushi Toyoda, Takehiko Itoh, Norihiro Okada, Masato Nikaido
    • Journal Title

      Molecular Biology and Evolution

      Volume: in press

    • DOI

      10.1093/molbev/msab084

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      2020 Annual Research Report
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  • [Journal Article] A single m6A modification in U6 snRNA diversifies exon sequence at the 5' splice site2021

    • Author(s)
      Yuma Ishigami, Takayuki Ohira, Yui Isokawa, Yutaka Suzuki and Tsutomu Suzuki
    • Journal Title

      Nature Communications

    • Description
      in press
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      2020 Annual Research Report
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  • [Journal Article] Selectivity of mRNA degradation by autophagy in yeast2021

    • Author(s)
      Shiho Makino, Tomoko Kawamata, Shintaro Iwasaki, Yoshinori Ohsumi
    • Journal Title

      Nature Communications

      Volume: 12

    • DOI

      10.1038/s41467-021-22574-6

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome editing reveals fitness effects of a gene for sexual dichromatism in Sulawesian fishes2021

    • Author(s)
      Satoshi Ansai, Koji Mochida, Shingo Fujimoto, Daniel F. Mokodongan, Bayu Kreshna Adhitya Sumarto, Kawilarang W. A. Masengi, Atsushi Toyoda, Kiyoshi Naruse, Kazunori Yamahira, Jun Kitano, et al.
    • Journal Title

      Nature Communications

      Volume: 12 Pages: 1350-1350

    • DOI

      10.1038/s41467-021-21697-0

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Rpd3/CoRest-mediated activity-dependent transcription regulates the flexibility in memory updating in Drosophila2021

    • Author(s)
      Mai Takakura, Reiko Nakagawa, Takeshi Ota, Yoko Kimura, Man Yung NG, Abdalla G. Alia, Hiroyuki Okuno, Yukinori Hirano
    • Journal Title

      Nature Communications

      Volume: 12 Pages: 628-628

    • DOI

      10.1038/s41467-021-20898-x

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis2021

    • Author(s)
      Amit Rai, Hideki Hirakawa, Ryo Nakabayashi, Shinji Kikuchi, Koki Hayashi, Megha Rai, Hiroshi Tsugawa, Taiki Nakaya, Atsushi Toyoda, Shoko Hikosaka, Eiji Goto, Kazuki Saito, Mami Yamazaki, et al.
    • Journal Title

      Nature Communications

      Volume: 12 Pages: 1-19

    • DOI

      10.1038/s41467-020-20508-2

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria2021

    • Author(s)
      Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki
    • Journal Title

      Nature Communications

      Volume: 12 Pages: 1-12

    • DOI

      10.1038/s41467-020-20199-9

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A RUNX?CBFβ-driven enhancer directs the Irf8 dose-dependent lineage choice between DCs and monocytes2021

    • Author(s)
      Koichi Murakami, Haruka Sasaki, Akira Nishiyama, Daisuke Kurotaki, Wataru Kawase, Tatsuma Ban, Jun Nakabayashi, Satoko Kanzaki, Yoichi Sekita, Hideaki Nakajima, Keiko Ozato, Tohru Kimura, Tomohiko Tamura
    • Journal Title

      Nature Immunology

      Volume: 22 Pages: 301-311

    • DOI

      10.1038/s41590-021-00871-y

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation2021

    • Author(s)
      Kyoko Ishino, Hidetoshi Hasuwa, Jun Yoshimura, Yuka W Iwasaki, Hidenori Nishihara, Naomi M Seki, Yasubumi Sakakibara, Atsushi Toyoda, Takehiko Itoh, Mikiko C Siomi, Shinichi Morishita, Haruhiko Siomi, et al.
    • Journal Title

      Nucleic Acids Research

      Volume: 49 Pages: 2700-2720

    • DOI

      10.1093/nar/gkab059

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] How plants grow under gravity conditions besides 1 g : perspectives from hypergravity and space experiments that employ bryophytes as a model organism2021

    • Author(s)
      Atsushi Kume, Hiroyuki Kamachi, Yusuke Onoda, Yuko T. Hanba, Yuji Hiwatashi, Ichirou Karahara, Tomomichi Fujita
    • Journal Title

      Plant Molecular Biology

      Volume: -

    • DOI

      10.1007/s11103-021-01146-8

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular dissection of haustorium development in Orobanchaceae parasitic plants2021

    • Author(s)
      Kaori Miyashima Furuta, Lei Xiang, Songkui Cui, Satoko Yoshida
    • Journal Title

      Plant Physiol.

      Volume: - Pages: 1424-1434

    • DOI

      10.1093/plphys/kiab153

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencing2021

    • Author(s)
      Bansho Masutani, Shin-ichi Arimura, Shinichi Morishita
    • Journal Title

      PLOS Computational Biology

      Volume: 17

    • DOI

      10.1371/journal.pcbi.1008597

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide analysis of long noncoding RNAs, 24-nt siRNAs, DNA methylation and H3K27me3 marks in Brassica rapa2021

    • Author(s)
      Hasan Mehraj, Daniel J. Shea, Satoshi Takahashi, Naomi Miyaji, Ayasha Akter, Motoaki Seki, Elizabeth S. Dennis, Ryo Fujimoto, Kenji Osabe
    • Journal Title

      PLOS ONE

      Volume: 16

    • DOI

      10.1371/journal.pone.0242530

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      2020 Annual Research Report
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  • [Journal Article] Substantial anti-gout effect conferred by common and rare dysfunctional variants of URAT1/SLC22A122021

    • Author(s)
      Yu Toyoda, Yusuke Kawamura, Akiyoshi Nakayama, Hirofumi Nakaoka, Toshihide Higashino, Seiko Shimizu, Ituro Inoue, Kimiyoshi Ichida, Hiroshi Suzuki, Tappei Takada, Hirotaka Matsuo, et al.
    • Journal Title

      Rheumatology

      Volume: - Pages: 5224-5232

    • DOI

      10.1093/rheumatology/keab327

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Global identification of RsmA/N binding sites in Pseudomonas aeruginosa by in vivo UV CLIP-seq2021

    • Author(s)
      Kotaro Chihara, Lars Barquist, Kenichi Takasugi, Naohiro Noda, Satoshi Tsuneda
    • Journal Title

      RNA Biology

    • DOI

      10.1080/15476286.2021.1917184

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Vasculature-driven stem cell population coordinates tissue scaling in dynamic organs2021

    • Author(s)
      R. Ichijo, M. Kabata, H. Kidoya, F. Muramatsu, R. Ishibashi, K. Abe, K. Tsutsui, H. Kubo, Y. Iizuka, S. Kitano, H. Miyachi, Y. Kubota, H. Fujiwara, A. Sada, T. Yamamoto, F. Toyoshima
    • Journal Title

      Science Advances

      Volume: 7

    • DOI

      10.1126/sciadv.abd2575

    • NAID

      120007181742

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic switch in UV response of mimicry-related pale-yellow colors in Batesian mimic butterfly, Papilio polytes2021

    • Author(s)
      Yoda, S. Sakakura, K., Kitamura, T., KonDo, Y., Sato, K., Ohnuki, R., Someya, T., Komata, S., Kojima, T., Yoshioka, S. and Fujiwara, H.
    • Journal Title

      Science Advances

      Volume: 7

    • DOI

      10.1126/sciadv.abd6475

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sparsely methylated mitochondrial cell free DNA released from cardiomyocytes contributes to systemic inflammatory response accompanied by atrial fibrillation2021

    • Author(s)
      Masahiro Yamazoe, Tetsuo Sansano, Kensuke Ihara, Kentaro Takahashi, Wakana Nakamura, Naomi Takahashi, Hiroaki Komuro, Satomi Hamada, Tetsushi Furukawa
    • Journal Title

      Scientific Reports

      Volume: 11 Pages: 5837-5837

    • DOI

      10.1038/s41598-021-85204-7

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomics and transcriptomics of the green mussel explain the durability of its byssus2021

    • Author(s)
      Koji Inoue, Yuki Yoshioka, Hiroyuki Tanaka, Azusa Kinjo, Mieko Sassa, Ikuo Ueda, Chuya Shinzato, Atsushi Toyoda, Takehiko Itoh
    • Journal Title

      Scientific Reports

      Volume: 11 Pages: 992-992

    • DOI

      10.1038/s41598-021-84948-6

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Helicobacter pylori type 4 secretion systems as gastroduodenal disease markers2021

    • Author(s)
      Bui Hoang Phuc, Vo Phuoc Tuan, Ho Dang Quy Dung, Tran Thanh Binh, Pham Huu Tung, Tran Dinh Tri, Ngo Phuong Minh Thuan, Vu Van Khien, Takeshi Matsumoto, Yoshio Yamaoka, et al.
    • Journal Title

      Scientific Reports

      Volume: 11 Pages: 4584-4584

    • DOI

      10.1038/s41598-021-83862-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] BMP signaling suppresses Gemcl expression and ependymal differentiation of mouse telencephalic progenitors2021

    • Author(s)
      Hanae Omiya, Shima Yamaguchi, Tomoyuki Watanabe, Takaaki Kuniya, Yujin Harada, Daichi Kawaguchi, Yukiko Gotoh
    • Journal Title

      Scientific Reports

      Volume: 11 Pages: 613-613

    • DOI

      10.1038/s41598-020-79610-6

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparative Analysis of Patient-Matched PDOs Revealed a Reduction in OLFM4-Associated Clusters in Metastatic Lesions in Colorectal Cancer2021

    • Author(s)
      Takuya Okamoto, David duVerle, Katsuyuki Yaginuma, Yasuko Natsume, Hitomi Yamanaka, Daisuke Kusama, Mayuko Fukuda, Mayuko Yamamoto, Yutaka Suzuki, Satoshi Nagayama, Ryoji Yao, et al.
    • Journal Title

      Stem Cell Reports

      Volume: 16 Pages: 954-967

    • DOI

      10.1016/j.stemcr.2021.02.012

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ligand-receptor interactions in plant hormone signaling2021

    • Author(s)
      Jun Takeuchi, Kosuke Fukui, Yoshiya Seto, Yousuke Takaoka, Masanori Okamoto
    • Journal Title

      The Plant Journal

      Volume: 105 Pages: 290-306

    • DOI

      10.1111/tpj.15115

    • NAID

      120006941098

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic and structural analysis of the in vivo functional redundancy between murine NANOS2 and NANOS32021

    • Author(s)
      Danelle Wright, Makoto Kiso, Yumiko Saga
    • Journal Title

      Development .

      Volume: 148

    • DOI

      10.1242/dev.191916

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats2021

    • Author(s)
      Mark Ravinet, Manabu Kume, Asano Ishikawa, Jun Kitano
    • Journal Title

      Journal of Evolutionary Biology

      Volume: 34 Pages: 114-127

    • DOI

      10.1111/jeb.13664

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Targeted deep sequencing of DNA from multiple tissue types improves the diagnostic rate and reveals a highly diverse phenotype of mosaic neurofibromatosis type 22021

    • Author(s)
      Yu Teranishi, Satoru Miyawaki, Hiroki Hongo, Shogo Dofuku, Atsushi Okano, Shunsaku Takayanagi, Takahiro Ota, Jun Yoshimura, Wei Qu, Jun Mitsui, Hirofumi Nakatomi, Shinichi Morishita, Shoji Tsuji, Nobuhito Saito
    • Journal Title

      J Med Genet.

      Volume: なし Pages: 701-711

    • DOI

      10.1136/jmedgenet-2020-106973

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reconstitution of the oocyte transcriptional network with transcription factors2021

    • Author(s)
      Nobuhiko Hamazaki, Hirohisa Kyogoku, Hiromitsu Araki, Fumihito Miura, Chisako Horikawa, Norio Hamada, So Shimamoto, Orie Hikabe, Kinichi Nakashima, Tomoya S. Kitajima, Takashi Ito, Harry G. Leitch, Katsuhiko Hayashi
    • Journal Title

      Nature

      Volume: 589 Pages: 264-269

    • DOI

      10.1038/s41586-020-3027-9

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Aberrant mucosal immunoreaction to tonsillar microbiota in immunoglobulin A nephropathy2021

    • Author(s)
      Hiroki Yamaguchi, Shin Goto, Nao Takahashi, Masafumi Tsuchida, Hirofumi Watanabe, Suguru Yamamoto, Yoshikatsu Kaneko, Koichi Higashi, Hiroshi Mori, Yukio Nakamura, Arata Horii, Ken Kurokawa, Ichiei Narita
    • Journal Title

      Nephrol Dial Transplant

      Volume: 36 Pages: 75-86

    • DOI

      10.1093/ndt/gfaa223

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Orobanchaceae parasite-host interactions2021

    • Author(s)
      J. Musembi Mutuku, Songkui Cui, Satoko Yoshida, Ken Shirasu
    • Journal Title

      New Phytol.

      Volume: 230 Pages: 46-59

    • DOI

      10.1111/nph.17083

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] HMGB1-mediated chromatin remodeling attenuatesI124gene expression for the protection from allergic contact dermatitis2021

    • Author(s)
      Naoyuki Senda, Hideyuki Yanai, Sana Hibino, Lei Li, Yu Mizushima, Tomomitsu Miyagaki, Mai Saeki, Yusuke Kishi, Sho Hangai, Junko Nishio, Makoto Sugaya, Tadatsugu Taniguchi, Shinichi Sato
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118

    • DOI

      10.1073/pnas.2022343118

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Directed induction of alveolar type I cells derived from pluripotent stem cells via Wnt signaling inhibition2021

    • Author(s)
      Shuhei Kanagaki, Satoshi Ikeo, Takahiro Suezawa, Yuki Yamamoto, Masahide Seki, Toyohiro Hirai, Masatoshi Hagiwara, Yutaka Suzuki, Shimpei Gotoh
    • Journal Title

      STEM CELLS

      Volume: 39 Pages: 156-169

    • DOI

      10.1002/stem.3302

    • NAID

      120006951652

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] NUDT21 Links Mitochondrial IPS-1 to RLR-Containing Stress Granules and Activates Host Antiviral Defense2021

    • Author(s)
      Saeko Aoyama-Ishiwatari, Tomohiko Okazaki, Shun-ichiro Iemura, Tohru Natsume, Yasushi Okada, Yukiko Gotoh
    • Journal Title

      JOURNAL OF IMMUNOLOGY (BALTIMORE, MD. : 1950)

      Volume: 206 Pages: 154-163

    • DOI

      10.4049/jimmunol.2000306

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of the Mitochondrial Genomes of Japanese Wolf Specimens in the Siebold Collection, Leiden2021

    • Author(s)
      Shuichi Matsumura, Yohey Terai, Hitomi Hongo, Naotaka Ishiguro
    • Journal Title

      Zoological Science

      Volume: 38 Issue: 1 Pages: 60-61

    • DOI

      10.2108/zs200019

    • NAID

      210000163110

    • ISSN
      0289-0003
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcript Identification Through Long-Read Sequencing2021

    • Author(s)
      Masahide Seki, Miho Oka, Liu Xu, Ayako Suzuki, Yutaka Suzuki
    • Journal Title

      Methods in Molecular Biology

      Volume: 2284 Pages: 531-541

    • DOI

      10.1007/978-1-0716-1307-8_29

    • Related Report
      2020 Annual Research Report
  • [Journal Article] The validation of the Helicobacter pylori CagA typing by immunohistochemidstry : nationwide application in Indonesia2020

    • Author(s)
      Muhammad Miftahussurur, Dalla Doohan, Ari Fahrial Syam, Iswan Abbas Nusi, Langgeng Agung Waskito, Kartika Afrida Fauzia, Yudith Annisa Ayu Rezkitha, Tomohisa Uchida, Yoshio Yamaoka, et al.
    • Journal Title

      Acta Histochemica

      Volume: 122 Pages: 151594-151594

    • DOI

      10.1016/j.acthis.2020.151594

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      2020 Annual Research Report
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  • [Journal Article] Gastric mucosal microbiota in a Mongolian population with gastric cancer and precursor conditions2020

    • Author(s)
      Boldbaatar Gantuya, Hashem B. E1 Serag, Takashi Matsumoto, Nadim J. Ajami, Tomohisa Uchida, Khasag Oyuntsetseg, Dashdorj Bolor, Yoshio Yamaoka
    • Journal Title

      Alimentary Pharmacology & Therapeutics

      Volume: 51 Pages: 770-780

    • DOI

      10.1111/apt.15675

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] A GWAS approach to find SNPs associated with salt removal in rice leaf sheath2020

    • Author(s)
      Sarin Neang, Marjorie de Ocampo, James A Egdane, John Damien Platten, Abdelbagi M Ismail, Masahide Seki, Yutaka Suzuki, Nicola Stephanie Skoulding, Mana Kano-Nakata, Akira Yamauchi, Shiro Mitsuya
    • Journal Title

      Annals of Botany

      Volume: 126 Pages: 1193-1202

    • DOI

      10.1093/aob/mcaa139

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Finding the Direct Optimal RNA Barrier Energy and Improving Pathways with an Arbitrary Energy Model2020

    • Author(s)
      Hiroki Takizawa, Junichi Iwakiri, Goro Terai and Kiyoshi Asai
    • Journal Title

      Bioinformatics

      Volume: 36

    • DOI

      10.1093/bioinformatics/btaa469

    • Description
      in press
    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] HiC-Hiker : a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C2020

    • Author(s)
      Ryo Nakabayashi, Shinichi Morishita
    • Journal Title

      Bioinformatics

      Volume: 36 Pages: 3966-3974

    • DOI

      10.1093/bioinformatics/btaa288

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Finding long tandem repeats in long noisy reads2020

    • Author(s)
      Shinichi Morishita, Kazuki Ichikawa, Eugene W Myers
    • Journal Title

      Bioinformatics

    • DOI

      10.1093/bioinformatics/btaa865

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] PBSIM2 : a simulator for long-read sequencers with a novel generative model of quality scores2020

    • Author(s)
      Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada
    • Journal Title

      Bioinformatics

    • DOI

      10.1093/bioinformatics/btaa835

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Four-Dimensional Organoid System to Visualize Cancer Cell Vascular Invasion2020

    • Author(s)
      Kiminori Yanagisawa, Masamitsu Konno, Hao Liu, Shinji Irie, Tsunekazu Mizushima, Masaki Mori, Yuichiro Doki, Hidetoshi Eguchi, Michiya Matsusaki, Hideshi Ishii
    • Journal Title

      Biology

      Volume: 9 Pages: 361-361

    • DOI

      10.3390/biology9110361

    • NAID

      120006952170

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heterogeneous fluid-like movements of chromatin and their implications to transcription.2020

    • Author(s)
      Ashwin SS, Maeshima K, Sasai M.
    • Journal Title

      Biophys Rev.

      Volume: 12 Issue: 2 Pages: 461-468

    • DOI

      10.1007/s12551-020-00675-8

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      2020 Annual Research Report 2019 Annual Research Report
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  • [Journal Article] RintC : fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp2020

    • Author(s)
      Hiroki Takizawa, Junichi Iwakiri, Kiyoshi Asai
    • Journal Title

      BMC Bioinformatics

      Volume: 21 Pages: 210-210

    • DOI

      10.1186/s12859-020-3535-5

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] MoAIMS : Efficient Software for Detection of Enriched Regions of MeRIP-Seq2020

    • Author(s)
      Yiqian Zhang and Michiaki Hamada
    • Journal Title

      BMC Bioinformatics

      Volume: 21 Pages: 103-103

    • DOI

      10.1186/s12859-020-3430-0

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
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  • [Journal Article] Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago2020

    • Author(s)
      Ryo Kakioka, Seiichi Mori, Tomoyuki Kokita, Takuya K. Hosoki, Atsushi J. Nagano, Asano Ishikawa, Manabu Kume, Atsushi Toyoda, Jun Kitano
    • Journal Title

      BMC Evolutionary Biology

      Volume: 20 Pages: 143-143

    • DOI

      10.1186/s12862-020-01713-5

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data2020

    • Author(s)
      Vasanthan Jayakumar, Hiromi Ishii, Misato Seki, Wakako Kumita, Takashi Inoue, Sumitaka Hase, Kengo Sato, Hideyuki Okano, Erika Sasaki, Yasubumi Sakakibara
    • Journal Title

      BMC Genomics

      Volume: 21 Pages: 243-243

    • DOI

      10.1186/s12864-020-6657-2

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Tissue-specific expression analysis of Na+ and C1- transporter genes associated with salt removal ability in rice leaf sheath2020

    • Author(s)
      Sarin Neang, Itsuki Goto, Nicola Stephanie Skoulding, Joyce A. Cartagena, Mana Kano-Nakata, Akira Yamauchi, Shiro Mitsuya
    • Journal Title

      BMC Plant Biology

      Volume: 20 Pages: 502-502

    • DOI

      10.1186/s12870-020-02718-4

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] One-carbon metabolism for cancer diagnostic and therapeutic approaches2020

    • Author(s)
      Ayumu Asai, Masamitsu Konno, Jun Koseki, Masateru Taniguchi, Andrea Vecchione, Hideshi Ishii
    • Journal Title

      Cancer Letters

      Volume: 470 Pages: 141-148

    • DOI

      10.1016/j.canlet.2019.11.023

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Clonal lineage from normal endometrium to ovarian clear cell carcinoma through ovarian endometriosis2020

    • Author(s)
      Kazuaki Suda, Luis Antonio Cruz Diaz, Kosuke Yoshihara, Hirofumi Nakaoka, Nozomi Yachida, Teiichi Motoyama, Ituro Inoue, Takayuki Enomoto
    • Journal Title

      Cancer Science

      Volume: - Pages: 3000-3009

    • DOI

      10.1111/cas.14507

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Combination of KRAS and SMAD4 mutations in formalin-fixed paraffin-embedded tissues as a biomarker for pancreatic cancer2020

    • Author(s)
      Takahiro Yokose, Minoru Kitago, Sachiko Matsuda, Yasushi Sasaki, Yohei Masugi, Yuki Nakamura, Masahiro Shinoda, Hiroshi Yagi, Takashi Tokino, Yuko Kitagawa, et al.
    • Journal Title

      Cancer Science

      Volume: 111 Pages: 2174-2182

    • DOI

      10.1111/cas.14425

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Pathogenesis of multiple pancreatic cancers involves multicentric carcinogenesis and intrapancreatic metastasis.2020

    • Author(s)
      Fujita Y, Matsuda S, Sasaki Y, Masugi Y, Kitago M, Yagi H, Abe Y, Shinoda M, Tokino T, Sakamoto M, Kitagawa Y.
    • Journal Title

      Cancer Science

      Volume: 111 Pages: 739-748

    • DOI

      10.1111/cas.14268

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
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  • [Journal Article] Essentiality of CENP-A Depends on Its Binding Mode to HJURP2020

    • Author(s)
      Tetsuya Hori, JingHui Cao, Kohei Nishimura, Mariko Ariyoshi, Yasuhiro Arimura, Hitoshi Kurumizaka, Tatsuo Fukagawa
    • Journal Title

      Cell Reports

      Volume: 33 Pages: 108388-108388

    • DOI

      10.1016/j.celrep.2020.108388

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Setdla Insufficiency in Mice Attenuates Excitatory Synaptic Function and Recapitulates Schizophrenia-Related Behavioral Abnormalities2020

    • Author(s)
      Kenichiro Nagahama, Kazuto Sakoori, Takaki Watanabe, Yusuke Kishi, Keita Kawaji, Michinori Koebis, Kazuki Nakao, Yukiko Gotoh, Atsu Aiba, Naofumi Uesaka, Masanobu Kano
    • Journal Title

      Cell Reports

      Volume: 32 Pages: 108126-108126

    • DOI

      10.1016/j.celrep.2020.108126

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multiomics Investigation Revealing the Characteristics of HIV-1-Infected Cells In Vivo2020

    • Author(s)
      Hirofumi Aso, Shumpei Nagaoka, Eiryo Kawakami, Jumpei Ito, Saiful Islam, Benjy Jek Yang Tan, Shinji Nakaoka, Koichi Ashizaki, Katsuyuki Shiroguchi, Yutaka Suzuki, Yorifumi Satou, Yoshio Koyanagi, Kei Sato
    • Journal Title

      Cell Reports

      Volume: 32 Pages: 107887-107887

    • DOI

      10.1016/j.celrep.2020.107887

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Systematic Analysis of Targets of Pumilio-mediated mRNA Decay Reveals that PUM1 Repression by DNA Damage Activates Translesion Synthesis2020

    • Author(s)
      Yamada T., Imamachi N., Imamura K., Taniue K., Kawamura T., Suzuki Y., Nagahama M., Akimitsu N.
    • Journal Title

      Cell Reports

      Volume: - Pages: 107542-107542

    • DOI

      10.1016/j.celrep.2020.107542

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
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  • [Journal Article] RNA Recognition and Immunity-Innate Immune Sensing and Its Posttranscriptional Regulation Mechanisms2020

    • Author(s)
      Takuya Uehata, Osamu Takeuchi
    • Journal Title

      Cells

      Volume: 9 Pages: 1701-1701

    • DOI

      10.3390/cells9071701

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Immuno-Surgical Management of Pancreatic Cancer with Analysis of Cancer Exosomes2020

    • Author(s)
      Yu Takeda, Shogo Kobayashi, Masatoshi Kitakaze, Daisaku Yamada, Hirofumi Akita, Ayumu Asai, Masamitsu Konno, Takahiro Arai, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii, et al.
    • Journal Title

      Cells

      Volume: 9 Pages: 1645-1645

    • DOI

      10.3390/cells9071645

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] The effects of codon bias and optimality on mRNA and protein regulation2020

    • Author(s)
      Fabian Hia, Osamu Takeuchi
    • Journal Title

      Cellular and Molecular Life Sciences

      Volume: 78 Pages: 1909-1928

    • DOI

      10.1007/s00018-020-03685-7

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional Role of the L396R Mutation of Tks5 Identified by an Exome-Wide Association Study in Atrial Fibrillation2020

    • Author(s)
      Xiaoxi Yang, Tetsuo Sasano, Yusuke Ebana, Jun K. Takeuchi, Kensuke Ihara, Masahiro Yamazoe, Tetsushi Furukawa
    • Journal Title

      Circ J

      Volume: 84 Issue: 12 Pages: 2148-2157

    • DOI

      10.1253/circj.cj-20-0101

      10.1253/circj.CJ-20-0101

    • NAID

      130007942473

    • ISSN
      1346-9843, 1347-4820
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Granulocyte-colony stimulating factor-producing uterine cervical cancer treated with chemoradiotherapy : A case report with mutation analysis and literature review2020

    • Author(s)
      Shintaro Shiba, Takahiro Oike, Ken Ando, Yuya Yoshimoto, Yoshiyasu Takayama, Tatsuya Ohno
    • Journal Title

      Clinical Case Reports

      Volume: 9 Pages: 185-192

    • DOI

      10.1002/ccr3.3495

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations2020

    • Author(s)
      Takashi Gakuhari, Shigeki Nakagome, Simon Rasmussen, Morten E. Allentoft, Takehiro Sato, Thorfinn Korneliussen, Atsushi Toyoda, Tsunehiko Hanihara, Eske Willerslev, Martin Sikora, Hiroki Oota, et al.
    • Journal Title

      Communication Biology

      Volume: 3 Pages: 1-10

    • DOI

      10.1038/s42003-020-01162-2

    • NAID

      120007168801

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] The Genetic Basis of Morphological Diversity in Domesticated Goldfish2020

    • Author(s)
      Tetsuo Kon, Yoshihiro Omori, Kentaro Fukuta, Hironori Wada, Masakatsu Watanabe, Zelin Chen, Miki Iwasaki, Atsushi Toyoda, Shawn M. Burgess, Hideki Noguchi, Takahisa Furukawa, et al.
    • Journal Title

      Current Biology

      Volume: 30

    • DOI

      10.1016/j.cub.2020.04.034

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      2020 Annual Research Report
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  • [Journal Article] An auxin transport network underlies xylem bridge formation between the hemi-parasitic plant Phtheirospermum japonicum and host Arabidopsis2020

    • Author(s)
      Takanori Wakatake, Satoshi Ogawa, Satoko Yoshida, Ken Shirasu
    • Journal Title

      Development

      Volume: 147

    • DOI

      10.1242/dev.187781

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A genome database for a Japanese population of the larvacean Oikopleura dioica2020

    • Author(s)
      Kai Wang, Ryo Tomura, Wei Chen, Miho Kiyooka, Hinako Ishizaki, Tomoyuki Aizu, Yohei Minakuchi, Masahide Seki, Yutaka Suzuki, Takehiko Itoh, Atsushi Toyoda, Hiroki Nishida, Takeshi A. Onuma, et al.
    • Journal Title

      Development, Growth & Differentiation

      Volume: 62 Pages: 450-461

    • DOI

      10.1111/dgd.12689

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Notch signaling2020

    • Author(s)
      Kenji Matsuno
    • Journal Title

      Development, Growth & Differentiation

      Volume: 62

    • DOI

      10.1111/dgd.12642

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] State-of-the-Art Technology of Model Organisms for Current Human Medicine2020

    • Author(s)
      Masamitsu Konno, Ayumu Asai, Toru Kitagawa, Masami Yabumoto, Ken Ofusa, Takahiro Arai, Takaaki Hirotsu, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii
    • Journal Title

      Diagnostics

      Volume: 10 Pages: 392-392

    • DOI

      10.3390/diagnostics10060392

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The physiological potential of anammox bacteria as revealed by their core genome structure2020

    • Author(s)
      Takashi Okubo, Atsushi Toyoda, Kohei Fukuhara, Ikuo Uchiyama, Yuhki Harigaya, Megumi Kuroiwa, Takuma Suzuki, Yuka Murakami, Yuichi Suwa, Hideto Takami
    • Journal Title

      DNA Research

      Volume: 28 Pages: 1-12

    • DOI

      10.1093/dnares/dsaa028

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera2020

    • Author(s)
      Masato Nikaido, Shinji Kondo, Zicong, Zhang, Jiaqi Wu, Hidenori Nishihara, Yoshihito Niimura, Yutaka Suzuki, Atsushi Toyoda, Asao Fujiyama, Sumio Sugano, Misako Yoneda, Chieko Kai, et al.
    • Journal Title

      DNA Research

      Volume: 27

    • DOI

      10.1093/dnares/dsaa021

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Profibrotic function of pulmonary group 2 innate lymphoid cells is controlled by Regnase-12020

    • Author(s)
      Yoshinari Nakatsuka, Ai Yaku, Tomohiro Handa, Alexis Vandenbon, Yuki Hikichi, Yasutaka Motomura, Yutaka Suzuki, Takuya Uehata, Takashi Mino, Tohru Tsujimura, Kazuyo Moro, Osamu Takeuchi, et al.
    • Journal Title

      European Respiratory Journal

      Volume: 57 Pages: 2000018-2000018

    • DOI

      10.1183/13993003.00018-2020

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Integrative genomic phylogeography reveals signs of mitonuclear incompatibility in a natural hybrid goby population2020

    • Author(s)
      Shotaro Hirase, Ayumi Tezuka, Atsushi J. Nagano, Mana Sato, Sho Hosoya, Kiyoshi Kikuchi, Wataru Iwasaki
    • Journal Title

      Evolution

      Volume: 75 Pages: 176-194

    • DOI

      10.1111/evo.14120

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Single-cell sequencing techniques from individual to multiomics analyses2020

    • Author(s)
      Yukie Kashima, Yoshitaka Sakamoto, Keiya Kaneko, Masahide Seki, Yutaka Suzuki, Ayako Suzuki
    • Journal Title

      Experimental & Molecular Medicine

      Volume: 52 Pages: 1419-1427

    • DOI

      10.1038/s12276-020-00499-2

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ten Years of Provenance Trials and Application of Multivariate Random Forests Predicted the Most Preferable Seed Source for Silviculture of Abies sachalinensis in Hokkaido, Japan2020

    • Author(s)
      Ikutaro Tsuyama, Wataru Ishizuka, Keiko Kitamura, Haruhiko Taneda, Susumu Goto
    • Journal Title

      Forests

      Volume: 11 Pages: 1058-1058

    • DOI

      10.3390/f11101058

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Role of BgaA as a Pneumococcal Virulence Factor Elucidated by Molecular Evolutionary Analysis2020

    • Author(s)
      Masaya Yamaguchi, Moe Takemura, Kotaro Higashi, Kana Goto, Yujiro Hirose, Tomoko Sumitomo, Masanobu Nakata, Narikazu Uzawa, Shigetada Kawabata
    • Journal Title

      Frontiers in Microbiology

      Volume: 11 Pages: 582437-582437

    • DOI

      10.3389/fmicb.2020.582437

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Corrigendum : Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori2020

    • Author(s)
      Hirokazu Yano, Md. Zobaidul Alam, Emiko Rimbara, Tomoko F. Shibata, Masaki Fukuyo, Yoshikazu Furuta, Atsushi Toyoda, Yutaka Suzuki, Sumio Sugano, Keigo Shibayama, Ichizo Kobayashi, et al.
    • Journal Title

      Frontiers in Microbiology

      Volume: 11

    • DOI

      10.3389/fmicb.2020.596598

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic and Physiological Characteristics of a Novel Nitrite-Oxidizing Nitrospira Strain Isolated From a Drinking Water Treatment Plant2020

    • Author(s)
      Hirotsugu Fujitani, Kengo Momiuchi, Kento Ishii, Manami Nomachi, Shuta Kikuchi, Norisuke Ushiki, Yuji Sekiguchi, Satoshi Tsuneda
    • Journal Title

      Frontiers in Microbiology

      Volume: 11 Pages: 545190-545190

    • DOI

      10.3389/fmicb.2020.545190

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori2020

    • Author(s)
      Hirokazu Yano, Md. Zobaidul Alam, Emiko Rimbara, Tomoko F. Shibata, Masaki Fukuyo, Yoshikazu Furuta, Atsushi Toyoda, Yutaka Suzuki, Sumio Sugano, Keigo Shibayama, Ichizo Kobayashi, et al.
    • Journal Title

      Frontiers in Microbiology

      Volume: 11 Pages: 1-16

    • DOI

      10.3389/fmicb.2020.01628

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Diploid Male Gametes Circumvent Hybrid Sterility Between Asian and African Rice Species2020

    • Author(s)
      Daichi Kuniyoshi, Itaru Masuda, Yoshitaka Kanaoka, Yuki Shimazaki-Kishi, Yoshihiro Okamoto, Hideshi Yasui, Toshio Yamamoto, Kiyotaka Nagaki, Yoichiro Hoshino, Yohei Koide, Itsuro Takamure, Yuji Kishima
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 579305-579305

    • DOI

      10.3389/fpls.2020.579305

    • NAID

      120007193548

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Fertile Tetraploids : New Resources for Future Rice Breeding?2020

    • Author(s)
      Yohei Koide, Daichi Kuniyoshi, Yuji Kishima
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 1231-1231

    • DOI

      10.3389/fpls.2020.01231

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Parallelized Latent Dirichlet Allocation Provides a Novel Interpretability of Mutation Signatures in Cancer Genomes2020

    • Author(s)
      Taro Matsutani, Michiaki Hamada
    • Journal Title

      Genes

      Volume: 11 Pages: 1127-1127

    • DOI

      10.3390/genes11101127

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines2020

    • Author(s)
      Chao Zeng, Michiaki Hamada
    • Journal Title

      Genes

      Volume: 11 Pages: 820-820

    • DOI

      10.3390/genes11070820

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] m6A demethylase ALKBH5 promotes proliferation of esophageal squamous cell carcinoma associated with poor prognosis2020

    • Author(s)
      Yushi Nagaki, Satoru Motoyama, Tomokazu Yamaguchi, Midori Hoshizaki, Yusuke Sato, Teruki Sato, Yukio Koizumi, Akiyuki Wakita, Yuta Kawakita, Yoshihiro Minamiya, Keiji Kuba, et al.
    • Journal Title

      Genes to Cells

      Volume: 25 Pages: 547-561

    • DOI

      10.1111/gtc.12792

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] H3K27me3 demethylase UTX regulates the differentiation of a subset of bipolar cells in the mouse retina.2020

    • Author(s)
      Umutoni, D., Iwagawa, T., Baba, Y., Tsuhako, A., Honda, H., Aihara, M, Watanabe, S.
    • Journal Title

      Genes to Cells

      Volume: 25 Pages: 402-412

    • DOI

      10.1111/gtc.12767

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
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  • [Journal Article] mRNA Editing, Processing and Quality Control in Caenorhabditis elegans2020

    • Author(s)
      Joshua A. Arribere, Hidehito Kuroyanagi, Heather A. Hundley
    • Journal Title

      Genetics

      Volume: 215 Pages: 1-39

    • DOI

      10.1534/genetics.119.301807

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A pipeline for complete characterization of complex germline rearrangements from long DNA reads2020

    • Author(s)
      Satomi Mitsuhashi, Sachiko Ohori, Kazutaka Katoh, Martin C. Frith, Naomichi Matsumoto
    • Journal Title

      Genome Medicine

      Volume: 12 Pages: 67-67

    • DOI

      10.1186/s13073-020-00762-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Long-read sequencing for non-small-cell lung cancer genomes2020

    • Author(s)
      Sakamoto Y, Xu L, Seki M, Yokoyama TT, Kasahara M, Kashima Y, Ohashi A, Shimada Y, Motoi N, Tsuchihara K, Kobayashi SS, Kohno T, Shiraishi Y, Suzuki A, Suzuki Y
    • Journal Title

      Genome Research

      Volume: 30 Pages: 1243-1257

    • DOI

      10.1101/gr.261941.120

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates2020

    • Author(s)
      Kentaro Kawata, Hiroyasu Wakida, Toshimichi Yamada, Kenzui Taniue, Han Han, Masahide Seki, Yutaka Suzuki, Nobuyoshi Akimitsu
    • Journal Title

      Genome Research

      Volume: 30 Pages: 1481-1491

    • DOI

      10.1101/gr.264408.120

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic regulation for acquiring glial identity by neural stem cells during cortical development2020

    • Author(s)
      Takumi Nakagawa, Yoshikuni Wada, Sayako Katada, Yusuke Kishi
    • Journal Title

      Glia

      Volume: - Pages: 1554-1567

    • DOI

      10.1002/glia.23818

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mutation profiling of uterine cervical cancer patients treated with definitive radiotherapy2020

    • Author(s)
      Yuya Yoshimoto, Yasushi Sasaki, Kazutoshi Murata, Shin-ei Noda, Yuhei Miyasaka, Junko Hamamoto, Mio Furuya, Junko Hirato, Yoshiyuki Suzuki, Tatsuya Ohno, Takashi Tokino, Takahiro Oike, Takashi Nakano
    • Journal Title

      Gynecologic Oncology

      Volume: 159 Pages: 546-553

    • DOI

      10.1016/j.ygyno.2020.08.020

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Gastric microbiota and Helicobacter pylori in Indonesian population2020

    • Author(s)
      Muhammad Miftahussurur, Langgeng Agung Waskito, Hashem B E1-Serag, Nadim J. Ajami, Iswan Abbas Nusi, Ari Fahrial Syam, Titong Sugihartono, Tomohisa Uchida, Yoshio Yamaoka, et al.
    • Journal Title

      Helicobacter

      Volume: 25

    • DOI

      10.1111/hel.12695

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Population-based study of Helicobacter pylori infection and antibiotic resistance in Bhutan2020

    • Author(s)
      Ratha-korn Vilaichone, Natsuda Aumpan, Thawee Ratanachu-ek, Tomohisa Uchida, Lotay Tshering, Varocha Mahachai, Yoshio Yamaoka
    • Journal Title

      International Journal of Infectious Diseases

      Volume: 97 Pages: 102-107

    • DOI

      10.1016/j.ijid.2020.05.077

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      2020 Annual Research Report
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  • [Journal Article] Helicobacter pylori Virulence Factor Cytotoxin-Associated Gene A (CagA)-Mediated Gastric Pathogenicity2020

    • Author(s)
      Shamshul Ansari, Yoshio Yamaoka
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Pages: 7430-7430

    • DOI

      10.3390/ijms21197430

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      2020 Annual Research Report
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  • [Journal Article] Roles of ASYMMETRIC LEAVES2 (AS2) and Nucleolar Proteins in the Adaxial-Abaxial Polarity Specification at the Perinucleolar Region in Arabidopsis2020

    • Author(s)
      Hidekazu Iwakawa, Hiro Takahashi, Yasunori Machida, Chiyoko Machida
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Pages: 7314-7314

    • DOI

      10.3390/ijms21197314

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells2020

    • Author(s)
      Kiminori Yanagisawa, Masayasu Toratani, Ayumu Asai, Masamitsu Konno, Hirohiko Niioka, Tsunekazu Mizushima, Taroh Satoh, Jun Miyake, Kazuhiko Ogawa, Andrea Vecchione, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Pages: 3166-3166

    • DOI

      10.3390/ijms21093166

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      2020 Annual Research Report
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  • [Journal Article] COVID-19 Drug Discovery Using Intensive Approaches2020

    • Author(s)
      Ayumu Asai, Masamitsu Konno, Miyuki Ozaki, Chihiro Otsuka, Andrea Vecchione, Takahiro Arai, Toru Kitagawa, Ken Ofusa, Masami Yabumoto, Takaaki Hirotsu, Masateru Taniguchi, Hidetoshi Eguchi, Yuichiro Doki, Hideshi Ishii
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Pages: 2839-2839

    • DOI

      10.3390/ijms21082839

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      2020 Annual Research Report
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  • [Journal Article] Environmental Atlas of Prokaryotes Enables Powerful and Intuitive Habitat-Based Analysis of Community Structures2020

    • Author(s)
      Kazumori Mise, Wataru Iwasaki
    • Journal Title

      iScience

      Volume: 23 Pages: 101624-101624

    • DOI

      10.1016/j.isci.2020.101624

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Notch and Delta Control the Switch and Formation of Camouflage Patterns in Caterpillars2020

    • Author(s)
      Hongyuan Jin, Shinichi Yoda, Liang Liu, Tetsuya Kojima, Haruhiko Fujiwara
    • Journal Title

      iScience

      Volume: 23 Pages: 101315-101315

    • DOI

      10.1016/j.isci.2020.101315

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The centriole protein CEP76 negatively regulates PLK1 activity in the cytoplasm for proper mitotic progression2020

    • Author(s)
      Yutaka Takeda, Kaho Yamazaki, Kaho Hashimoto, Koki Watanabe, Takumi Chinen, Daiju Kitagawa
    • Journal Title

      Journal of Cell Science

      Volume: 133

    • DOI

      10.1242/jcs.241281

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Free-Energy Calculation of Ribonucleic Inosines and Its Application to Nearest-Neighbor Parameters2020

    • Author(s)
      Shun Sakuraba, Junichi Iwakiri, Michiaki Hamada, Tomoshi Kameda, Genichiro Tsuji, Yasuaki Kimura, Hiroshi Abe, Kiyoshi Asai
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 16 Pages: 5923-5935

    • DOI

      10.1021/acs.jctc.0c00270

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Differences in the contributions of sex linkage and androgen regulation to sex-biased gene expression in juvenile and adult sticklebacks2020

    • Author(s)
      Jun Kitano, Ryo Kakioka, Asano Ishikawa, Atsushi Toyoda, Makoto Kusakabe
    • Journal Title

      Journal of Evolutionary Biology

      Volume: 33 Pages: 1129-1138

    • DOI

      10.1111/jeb.13662

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Loss-of-function variants in NEK1 are associated with an increased risk of sporadic ALS in the Japanese population2020

    • Author(s)
      Hiroya Naruse, Hiroyuki Ishiura, Jun Mitsui, Yuji Takahashi, Takashi Matsukawa, Jun Yoshimura, Koichiro Doi, Shinichi Morishita, Jun Goto, Tatsushi Toda, Shoji Tsuji
    • Journal Title

      Journal of Human Genetics

      Volume: 66 Pages: 237-241

    • DOI

      10.1038/s10038-020-00830-9

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bioinformatics Approaches for Functional Prediction of Long Noncoding RNAs2020

    • Author(s)
      Fayaz Seifuddin, Mehdi Pirooznia
    • Journal Title

      Methods in Molecular Biology

      Volume: 2254 Pages: 1-13

    • DOI

      10.1007/978-1-0716-1158-6_1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145 : H282020

    • Author(s)
      Keiji Nakamura, Kazunori Murase, Mitsuhiko P. Sato, Atsushi Toyoda, Takehiko Itoh, Jacques Georges Mainil, Denis Pierard, Shuji Yoshino, Keiko Kimata, Junko Isobe, Kazuko Seto, Yoshiki Etoh, Hiroshi Narimatsu, Shioko Saito, Jun Yatsuyanagi, Kenichi Lee, Sunao Iyoda, Makoto Ohnishi, Tadasuke Ooka, Yasuhiro Gotoh, Yoshitoshi Ogura and Tetsuya Hayashi.
    • Journal Title

      Microbial Genomics

      Volume: 6

    • DOI

      10.1099/mgen.0.000323

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
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  • [Journal Article] Complete Genome Sequence of Helicobacter pylori Strain ATCC 43504, a Type Strain That Can Infect Gerbils2020

    • Author(s)
      Ryo Kinoshita-Daitoku, Yoshitoshi Ogura, Kotaro Kiga, Fumito Maruyama, Tomoyo Kondo, Ichiro Nakagawa, Tetsuya Hayashi, Hitomi Mimuro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9

    • DOI

      10.1128/mra.00105-20

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      2020 Annual Research Report
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  • [Journal Article] A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of-thorns starfish, in the Indo-Pacific2020

    • Author(s)
      Naohisa Wada, Hideaki Yuasa, Rei Kajitani, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Atsushi Toyoda, Sen-Lin Tang, Takehiko Itoh, Tetsuya Hayashi, Nina Yasuda, et al.
    • Journal Title

      Microbiome

      Volume: 8 Pages: 123-123

    • DOI

      10.1186/s40168-020-00880-3

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation2020

    • Author(s)
      Shion Hosoda, Suguru Nishijima, Tsukasa Fukunaga, Masahira Hattori, Michiaki Hamada
    • Journal Title

      Microbiome

      Volume: 8 Pages: 1-12

    • DOI

      10.1186/s40168-020-00864-3

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High Antibiotic Resistance of Helicobacter pylori and Its Associated Novel Gene Mutations among the Mongolian Population2020

    • Author(s)
      Dashdorj Azzaya, Boldbaatar Gantuya, Khasag Oyuntsetseg, Duger Davaadorj, Takashi Matsumoto, Junko Akada, Yoshio Yamaoka
    • Journal Title

      Microorganisms

      Volume: 8 Pages: 1062-1062

    • DOI

      10.3390/microorganisms8071062

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      2020 Annual Research Report
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  • [Journal Article] Next-Generation Sequencing of the Whole Bacterial Genome for Tracking Molecular Insight into the Broad-Spectrum Antimicrobial Resistance of Helicobacter pylori Clinical Isolates from the Democratic Republic of Congo2020

    • Author(s)
      Evariste Tshibangu-Kabamba, Patrick de Jesus Ngoma-Kisoko, Vo Phuoc Tuan, Takashi Matsumoto, Junko Akada, Yasutoshi Kido, Ghislain Disashi-Tumba, Yoshio Yamaoka, et al.
    • Journal Title

      Microorganisms

      Volume: 8 Pages: 887-887

    • DOI

      10.3390/microorganisms8060887

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      2020 Annual Research Report
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  • [Journal Article] Autocrine leukemia inhibitory factor promotes esophageal squamous cell carcinoma progression via Src family kinase-dependent Yes-associated protein activation2020

    • Author(s)
      Kawazoe T, Saeki H, Oki E, Oda Y, Maehara Y, Mori, M, Taniguchi K
    • Journal Title

      Molecular Cancer Research

      Volume: 18 Pages: 1876-1888

    • DOI

      10.1158/1541-7786.mcr-20-0186

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic Profiling by ALaP-Seq Reveals Transcriptional Regulation by PML Bodies through DNMT3A Exclusion2020

    • Author(s)
      Misuzu Kurihara, Kagayaki Kato, Chiaki Sanbo, Yasuyuki Ohkawa, Takeshi Fuchigami, Yusuke Miyanari
    • Journal Title

      Molecular Cell

      Volume: 78 Pages: 493-505

    • DOI

      10.1016/j.molcel.2020.04.004

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence Data of Nonpathogenic Strain Rhizobium vitis VAR03-1, a Biological Control Agent for Grapevine Crown Gall Disease2020

    • Author(s)
      Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
    • Journal Title

      Molecular Plant-Microbe Interactions®

      Volume: 33 Pages: 1451-1453

    • DOI

      10.1094/mpmi-07-20-0181-a

    • NAID

      120007004827

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence Data of Tumorigenic Rhizobium vitis Strain VAT03-9, a Causal Agent of Grapevine Crown Gall Disease2020

    • Author(s)
      Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
    • Journal Title

      Molecular Plant-Microbe Interactions®

      Volume: 33 Pages: 1280-1282

    • DOI

      10.1094/mpmi-07-20-0180-a

    • NAID

      120007004826

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence Data of Nonpathogenic and Nonantagonistic Strain of Rhizobium vitis VAR06-30 Isolated From Grapevine Rhizosphere2020

    • Author(s)
      Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
    • Journal Title

      Molecular Plant-Microbe Interactions®

      Volume: 33 Pages: 1283-1285

    • DOI

      10.1094/mpmi-07-20-0182-a

    • NAID

      120007004828

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coli2020

    • Author(s)
      Tomoya Maeda, Junichiro Iwasawa, Hazuki Kotani, Natsue Sakata, Masako Kawada, Takaaki Horinouchi, Aki Sakai, Kumi Tanabe, Chikara Furusawa
    • Journal Title

      Nature Communications

      Volume: 11 Pages: 5970-5970

    • DOI

      10.1038/s41467-020-19713-w

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      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Polycomb group protein Ringl regulates dorsoventral patterning of the mouse telencephalon2020

    • Author(s)
      Hikaru Eto, Yusuke Kishi, Nayuta Yakushiji-Kaminatsui, Hiroki Sugishita, Shun Utsunomiya, Haruhiko Koseki, Yukiko Gotoh
    • Journal Title

      Nature Communications

      Volume: 11 Pages: 5709-5709

    • DOI

      10.1038/s41467-020-19556-5

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transient IGF-1R inhibition combined with osimertinib eradicates AXL-low expressing EGFR mutated lung cancer2020

    • Author(s)
      Rong Wang, Tadaaki Yamada, Kenji Kita, Hirokazu Taniguchi, Sachiko Arai, Koji Fukuda, Minoru Terashima, Hisanori Uehara, Xujun Han, Kunio Matsumoto, Wei Wang, Takeshi Suzuki, Seiji Yano, et al.
    • Journal Title

      Nature Communications

      Volume: 11 Pages: 1-1

    • DOI

      10.1038/s41467-020-18442-4

    • NAID

      120007186801

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genome-wide association meta-analysis identifies GP2 gene risk variants for pancreatic cancer.2020

    • Author(s)
      Yingsong, Lin., Doki, Y., Ishii, Hideshi, Eguchi, H., Mori, Masaki, Matsuo, K.
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 3175-3175

    • DOI

      10.1038/s41467-020-16711-w

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] RNA interference-independent reprogramming of DNA methylation in Arabidopsis2020

    • Author(s)
      To Taiko Kim、Nishizawa Yuichiro、Inagaki Soichi、Tarutani Yoshiaki、Tominaga Sayaka、Toyoda Atsushi、Fujiyama Asao、Berger Frederic、Kakutani Tetsuji
    • Journal Title

      Nature Plants

      Volume: 6 Pages: 1455-1467

    • DOI

      10.1038/s41477-020-00810-z

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Design principles of a minimal auxin response system2020

    • Author(s)
      Hirotaka Kato, Sumanth K. Mutte, Hidemasa Suzuki, Isidro Crespo, Shubhajit Das, Tatyana Radoeva, Mattia Fontana, D. Roeland Boer, Ryuichi Nishihama, Takayuki Kohchi, Dolf Weijers, et al.
    • Journal Title

      Nature Plants

      Volume: 6 Pages: 473-482

    • DOI

      10.1038/s41477-020-0662-y

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Splice-site mutations in KIF5A in the Japanese case series of amyotrophic lateral sclerosis2020

    • Author(s)
      Hiroya Naruse, Hiroyuki Ishiura, Jun Mitsui, Yuji Takahashi, Takashi Matsukawa, Kaori Sakuishi, Kiyotaka Nakamagoe, Zenshi Miyake, Akira Tamaoka, Shinichi Morishita, Tatsushi Toda, Shoji Tsuji, et al.
    • Journal Title

      neurogenetics

      Volume: 22 Pages: 11-17

    • DOI

      10.1007/s10048-020-00626-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Emerging Role of ncRNAs and RNA-Binding Proteins in Mitotic Apparatus Formation2020

    • Author(s)
      Kei K. Ito, Koki Watanabe, Dai ju Kitagawa
    • Journal Title

      Noncoding RNA

      Volume: 6 Pages: 113-113

    • DOI

      10.3390/ncrna6010013

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Exchange of endogenous and heterogeneous yeast terminators in Pichia pastoris to tune mRNA stability and gene expression2020

    • Author(s)
      Yoichiro Ito, Goro Terai, Misa Ishigami, Noriko Hashiba, Yasuyuki Nakamura, Takahiro Bamba, Ryota Kumokita, Tomohisa Hasunuma, Kiyoshi Asai, Jun Ishii, Akihiko Kondo
    • Journal Title

      Nucleic Acids Research

      Volume: 48 Pages: 13000-13012

    • DOI

      10.1093/nar/gkaa1066

    • NAID

      120006954873

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Improving the prediction accuracy of protein abundance in Escherichia coli using mRNA accessibility2020

    • Author(s)
      Goro Terai, Kiyoshi Asai
    • Journal Title

      Nucleic Acids Research

      Volume: 48

    • DOI

      10.1093/nar/gkaa481

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hereditary pancreatitis model by blastocyst complementation in mouse.2020

    • Author(s)
      Asai, A., Konno M., Kawamoto K., Isotani, A., Mori, M., Eguchi H., Doki, Y., Arai, T., Ishii, H.
    • Journal Title

      Oncotarget

      Volume: 11 Issue: 22 Pages: 2061-2073

    • DOI

      10.18632/oncotarget.27595

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Escherichia coli 08 : H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea.2020

    • Author(s)
      Ishimaru K, Sasaki M, Narimatsu H, Arimizu Y, Gotoh Y, Nakamura K, Hayashi T, Ogura Y.
    • Journal Title

      Open Forum Infectious Diseases

      Volume: 7

    • DOI

      10.1093/ofid/ofaa021

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide patterns of divergence and introgression after secondary contact between Pungitius sticklebacks2020

    • Author(s)
      Yo Y. Yamasaki, Ryo Kakioka, Hiroshi Takahashi, Atsushi Toyoda, Atsushi J. Nagano, Yoshiyasu Machida, Peter R. Moller, Jun Kitano
    • Journal Title

      Philosophical Transactions of the Royal Society B : Biological Sciences

      Volume: 375 Pages: 20190548-20190548

    • DOI

      10.1098/rstb.2019.0548

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Arabidopsis SMN2/HEN2, Encoding DEAD-Box RNA Helicase, Governs Proper Expression of the Resistance Gene SMN1/RPS6 and Is Involved in Dwarf, Autoimmune Phenotypes of mekk1 and mpk4 Mutants2020

    • Author(s)
      Momoko Takagi, Naoki Iwamoto, Yuta Kubo, Takayuki Morimoto, Hiroki Takagi, Fuminori Takahashi, Takumi Nishiuchi, Keisuke Tanaka, Ken Shirasu, Kazuya Ichimura, et al.
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Pages: 1507-1516

    • DOI

      10.1093/pcp/pcaa071

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Intellectual disability-associated gain-of-function mutations in CERT1 that encodes the ceramide transport protein CERT2020

    • Author(s)
      Hiroaki Murakami, Norito Tamura, Yumi Enomoto, Kentaro Shimasaki, Kenji Kurosawa, Kentaro Hanada
    • Journal Title

      PLOS ONE

      Volume: 15

    • DOI

      10.1371/journal.pone.0243980

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs2020

    • Author(s)
      Chihiro Udagawa, Yasushi Sasaki, Yasuhiro Tanizawa, Hiroshi Suemizu, Yasuyuki Ohnishi, Yasukazu Nakamura, Takashi Tokino, Hitoshi Zembutsu
    • Journal Title

      PLOS ONE

      Volume: 15

    • DOI

      10.1371/journal.pone.0239614

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Serum pepsinogens as a gastric cancer and gastritis biomarker in South and Southeast Asian populations2020

    • Author(s)
      Muhammad Miftahussurur, Langgeng Agung Waskito, Hafeza Aftab, Ratha-korn Vilaichone, Phawinee Subsomwong, Iswan Abbas Nusi, Ari Fahrial Syam, Varocha Mahachai, Yoshio Yamaoka, et al.
    • Journal Title

      PLOS ONE

      Volume: 15

    • DOI

      10.1371/journal.pone.0230064

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Non-pathogenic Escherichia coli acquires virulence by mutating a growth-essential LPS transporter2020

    • Author(s)
      Kaito C, Yoshikai H, Wakamatsu A, Miyashita A, Matsumoto Y, Fujiyuki T, Kato M, Ogura Y, Hayashi T, Isogai T, Sekimizu K
    • Journal Title

      PLOS Pathogens

      Volume: 16 Issue: 4

    • DOI

      10.1371/journal.ppat.1008469

    • NAID

      120006860101

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Fruit setting rewires central metabolism via gibberellin cascades2020

    • Author(s)
      Shinozaki Yoshihito et al.
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Pages: 23970-23981

    • DOI

      10.1073/pnas.2011859117

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Rapid and ongoing evolution of repetitive sequence structures in human centromeres2020

    • Author(s)
      Yuta Suzuki, Eugene W. Myers, Shinichi Morishita
    • Journal Title

      Science Advances

      Volume: 6

    • DOI

      10.1126/sciadv.abd9230

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ethylene signaling mediates host invasion by parasitic plants2020

    • Author(s)
      Songkui Cui, Tomoya Kubota, Tomoaki Nishiyama, Juliane K. Ishida, Shuji Shigenobu, Tomoko F. Shibata, Atsushi Toyoda, Mitsuyasu Hasebe, Ken Shirasu, Satoko Yoshida
    • Journal Title

      Science Advances

      Volume: 6

    • DOI

      10.1126/sciadv.abc2385

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Staphylococcus Agr virulence is critical for epidermal colonization and associates with atopic dermatitis development2020

    • Author(s)
      Nakamura Y, Takahashi H, Takaya A, Inoue Y, Katayama Y, Kusuya Y, Shoji T, Takada S, Nakagawa S, Oguma R, Saito N, Ozawa N, Nakano T, Yamaide F, Dissanayake E, Suzuki S, Villaruz A, Varadarajan S, Matsumoto M, Kobayashi T, Kono M, Sato Y, Akiyama M, Otto M, Matsue H, Nunez G, Shimojo N.
    • Journal Title

      Science translational medicine.

      Volume: 8 Pages: 4068-4068

    • DOI

      10.1126/scitranslmed.aay4068

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Batesian mimicry has evolved with deleterious effects of the pleiotropic gene doublesex2020

    • Author(s)
      Shinya Komata, Tasuku Kitamura, Haruhiko Fujiwara
    • Journal Title

      Scientific Reports

      Volume: 10 Pages: 21333-21333

    • DOI

      10.1038/s41598-020-78055-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica2020

    • Author(s)
      Miki Okuno, Shuntaro Miyamoto, Takehiko Itoh, Masahide Seki, Yutaka Suzuki, Shusei Mizushima, Asato Kuroiwa
    • Journal Title

      Scientific Reports

      Volume: 10 Pages: 20073-20073

    • DOI

      10.1038/s41598-020-77094-y

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ARID1A protein expression is retained in ovarian endometriosis with ARID1A loss-of-function mutations : implication for the two-hit hypothesis2020

    • Author(s)
      Nozomi Yachida, Kosuke Yoshihara, Kazuaki Suda, Hirofumi Nakaoka, Haruka Ueda, Kentaro Sugino, Manako Yamaguchi, Yutaro Mori, Kaoru Yamawaki, Ituro Inoue, Takayuki Enomoto, et al.
    • Journal Title

      Scientific Reports

      Volume: 10 Pages: 14260-14260

    • DOI

      10.1038/s41598-020-71273-7

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A possible beneficial effect of Bacteroides on faecal lipopolysaccharide activity and cardiovascular diseases2020

    • Author(s)
      Naofumi Yoshida, Tomoya Yamashita, Shigenobu Kishino, Hikaru Watanabe, Kengo Sasaki, Daisuke Sasaki, Tokiko Tabata, Yuta Sugiyama, Takuji Yamada, Jun Ogawa, Ken-ichi Hirata, et al.
    • Journal Title

      Scientific Reports

      Volume: 10 Pages: 13009-13009

    • DOI

      10.1038/s41598-020-69983-z

    • NAID

      120006879534

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comprehensive investigation of RNF213 nonsynonymous variants associated with intracranial artery stenosis2020

    • Author(s)
      Hiroki Hongo, Satoru Miyawaki, Hideaki Imai, Masahiro Shimizu, Shinichi Yagi, Jun Mitsui, Hiroyuki Ishiura, Jun Yoshimura, Koichiro Doi, Wei Qu, Shinichi Morishita, Shoji Tsuji, Nobuhito Saito, et al.
    • Journal Title

      Scientific Reports

      Volume: 10(1) Pages: 11942-11942

    • DOI

      10.1038/s41598-020-68888-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Essential factors involved in the precise targeting and insertion of telomere-specific non-LTR retrotransposon, SART1Bm2020

    • Author(s)
      Narisu Nichuguti, Haruhiko Fujiwara
    • Journal Title

      Scientific Reports

      Volume: 10 Pages: 1-12

    • DOI

      10.1038/s41598-020-65925-x

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Theoretical analyses and experimental validation of the effects caused by the fluorinated substituent modification of DNA2020

    • Author(s)
      Jun Koseki, Masamitsu Konno, Ayumu Asai, Naohiro Horie, Kenta Tsunekuni, Koichi Kawamoto, Satoshi Obika, Yuichiro Doki, Masaki Mori, Hideshi Ishii
    • Journal Title

      Scientific Reports

      Volume: 10 Pages: 1138-1138

    • DOI

      10.1038/s41598-020-57899-7

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Contrasting Patterns of Microbial Communities in Glacier Cryoconite of Nepali Himalaya and Greenland, Arctic2020

    • Author(s)
      Purnima Singh, Masaharu Tsuji, Shiv Mohan Singh, Nozomu Takeuchi
    • Journal Title

      Sustainability

      Volume: 12 Pages: 6477-6477

    • DOI

      10.3390/su12166477

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Soil Yeasts in the Vicinity of Syowa Station, East Antarctica : Their Diversity and Extracellular Enzymes, Cold Adaptation Strategies, and Secondary Metabolites2020

    • Author(s)
      Masaharu Tsuji, Sakae Kudoh
    • Journal Title

      Sustainability

      Volume: 12 Pages: 4518-4518

    • DOI

      10.3390/su12114518

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Statistical Validation Verifies That Enantiomorphic States of Chiral Cells Are Determinant Dictating the Left-or Right-Handed Direction of the Hindgut Rotation in Drosophila2020

    • Author(s)
      Tomoki Ishibashi, Mikiko Inaki, Kenji Matsuno
    • Journal Title

      Symmetry

      Volume: 12 Pages: 1991-1991

    • DOI

      10.3390/sym12121991

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] MeCP2 Levels Regulate the 3D Structure of Heterochromatic Foci in Mouse Neurons2020

    • Author(s)
      Aya Ito-Ishida, Steven A. Baker, Roy V. Sillitoe, Yaling Sun, Jian Zhou, Yukiteru Ono, Junichi Iwakiri, Michisuke Yuzaki, Huda Y. Zoghbi
    • Journal Title

      J Neurosci.

      Volume: 40 Pages: 8746-8766

    • DOI

      10.1523/jneurosci.1281-19.2020

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Targeted gene disruption of ATP synthases 6-1 and 6-2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs2020

    • Author(s)
      Shin-ichi Arimura, Hiroki Ayabe, Hajime Sugaya, Miki Okuno, Yoshiko Tamura, Yu Tsuruta, Yuta Watari, Shungo Yanase, Takaki Yamauchi, Takehiko Itoh, Atsushi Toyoda, Hideki Takanashi, Nobuhiro Tsutsumi
    • Journal Title

      The Plant Journal

      Volume: 104 Pages: 1459-1471

    • DOI

      10.1111/tpj.15041

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA - binding motif in Arabidopsis ASYMMERTIC LEAVES22020

    • Author(s)
      Luo L., Ando S., Sakamoto Y., Suzuki T., Takahashi H., Ishibashi N., Kojima S., Kurihara D., Higashiyama T., Yamamoto K., Matsunaga S., Machida C., Sasabe M., Machida Y.
    • Journal Title

      The Plant Journal

      Volume: 101 Pages: 1118-1134

    • DOI

      10.1111/tpj.14579

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Whole Genome Sequencing Reveals Virulence Potentials of Helicobacter pylori Strain KE21 Isolated from a Kenyan Patient with Gastric Signet Ring Cell Carcinoma2020

    • Author(s)
      Catherine Mwangi, Stephen Njoroge, Evariste Tshibangu-Kabamba, Zahir Moloo, Allan Rajula, Smita Devani, Takashi Matsumoto, Kimang' a Nyerere, Samuel Kariuki, Gunturu Revathi, Yoshio Yamaoka
    • Journal Title

      Toxins

      Volume: 12 Pages: 556-556

    • DOI

      10.3390/toxins12090556

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Biofilm Formation and Antibiotic Resistance Phenotype of Helicobacter pylori Clinical Isolates2020

    • Author(s)
      Kartika Afrida Fauzia, Muhammad Miftahussurur, Ari Fahrial Syam, Langgeng Agung Waskito, Dalla Doohan, Yudith Annisa Ayu Rezkitha, Takashi Matsumoto, Shigeru Kamiya, Yoshio Yamaoka, et al.
    • Journal Title

      Toxins

      Volume: 12 Pages: 473-473

    • DOI

      10.3390/toxins12080473

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Discovery of the Gene Encoding a Novel Small Serum Protein (SSP) of Protobothrops flavoviridis and the Evolution of SSPs2020

    • Author(s)
      Kento Inamaru, Ami Takeuchi, Marie Maeda, Hiroki Shibata, Yasuyuki Fukumaki, Naoko Oda-Ueda, Shosaku Hattori, Motonori Ohno, Takahito Chijiwa
    • Journal Title

      Toxins

      Volume: 12 Pages: 177-177

    • DOI

      10.3390/toxins12030177

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RNA N6-Methyladenosine and the Regulation of RNA Localization and Function in the Brain2020

    • Author(s)
      Sachithrani U. Madugalle, Kate Meyer, Dan Ohtan Wang, Timothy W. Bredy
    • Journal Title

      Trends in Neurosciences

      Volume: 43 Pages: 1011-1023

    • DOI

      10.1016/j.tins.2020.09.005

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Discovery of unique African Helicobacter pylori CagA-multimerization motif in the Dominican Republic2020

    • Author(s)
      Ono Takaaki、Cruz Modesto、Nagashima Hiroyuki、Subsomwong Phawinee、Akada Junko、Matsumoto Takashi、Uchida Tomohisa、Suzuki Rumiko、Hosking Celso、Abreu Jos? A Jim?nez、Yamaoka Yoshio
    • Journal Title

      World Journal of Gastroenterology

      Volume: 26 Pages: 7118-7130

    • DOI

      10.3748/wjg.v26.i45.7118

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cooperation of Spaln and Prrn5 for Construction of Gene-Structure-Aware Multiple Sequence Alignment2020

    • Author(s)
      Osamu Gotoh
    • Journal Title

      Methods in Molecular Biology

      Volume: 2231 Pages: 71-88

    • DOI

      10.1007/978-1-0716-1036-7_5

    • Related Report
      2020 Annual Research Report
  • [Journal Article] RNA Modifications in the Central Nervous System2020

    • Author(s)
      Dan Ohtan Wang
    • Journal Title

      The Oxford Handbook of Neuronal Protein Synthesis

    • DOI

      10.1093/oxfordhb/9780190686307.013.23

    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] 実験用マウスを用いた放射線被ばくの次世代遺伝影響の解析2020

    • Author(s)
      佐藤康成、内村有邦
    • Journal Title

      広島医学

      Volume: 73 Pages: 228-232

    • Related Report
      2020 Annual Research Report
  • [Journal Article] 染色体分配に必須なセントロメアのクロマチン構造2020

    • Author(s)
      堀哲也, 深川竜郎
    • Journal Title

      細胞

      Volume: 52 Pages: 342-347

    • Related Report
      2020 Annual Research Report
  • [Journal Article] 連載講座 生命科学を拓く新しい実験動物モデルー キンギョの多様な表現型と全ゲノム重複-疾患モデル動物としての展開2020

    • Author(s)
      大森 義裕
    • Journal Title

      生体の科学

      Volume: 71 Issue: 1 Pages: 68-73

    • DOI

      10.11477/mf.2425201122

    • ISSN
      0370-9531, 1883-5503
    • Related Report
      2020 Annual Research Report
  • [Journal Article] 長寿フロントラインAlzheimer病剖検脳の神経細胞特異的メチル化解析から明らかになった、神経変性におけるDNA傷害蓄積の重要性2020

    • Author(s)
      間野 達雄
    • Journal Title

      エイジングアンドヘルス

      Volume: 93 Pages: 38-41

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Dysfunctional missense variant of OAT10/SLC22A13 decreases gout risk and serum uric acid levels.2020

    • Author(s)
      Higashino T, Morimoto K, Nakaoka H, Toyoda Y, Kawamura Y, Shimizu S, Nakamura T, Hosomichi K, Nakayama A, Ooyama K, Ooyama H, Shimizu T, Ueno M, Ito T, Tamura T, Naito M, Nakashima H, Kawaguchi M, Takao M, Kawai Y, Osada N, Ichida K, Yamamoto K, Suzuki H, Shinomiya N, Inoue I, Takada T, Matsuo H
    • Journal Title

      Ann Rheum Dis.

      Volume: 79(1) Pages: 164166-164166

    • DOI

      10.1136/annrheumdis-2019-216044

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically-defined gout patients.2020

    • Author(s)
      Nakayama A, Nakatochi M, Kawamura Y, Yamamoto K, Nakaoka H, Kuriki K, Wakai K, Matsuo H, et al.
    • Journal Title

      Ann Rheum Dis

      Volume: 79 Issue: 5 Pages: 657665-657665

    • DOI

      10.1136/annrheumdis-2019-216644

    • NAID

      120007042436

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The m6A Methyltransferase METTL3 Contributes to Transforming Growth Factor-beta-induced Epithelial-Mesenchymal Transition of Lung Cancer Cells Through the Regulation of JUNB2020

    • Author(s)
      Sasithorn Wanna-Udom, Minoru Terashima, Hanbing Lyu, Akihiko Ishimura, Takahisa Takino, Matomo Sakari, Toshifumi Tsukahara, Takeshi Suzuki
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 524 Pages: 150-155

    • DOI

      10.1016/j.bbrc.2020.01.042

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] E-test versus agar dilution for antibiotic susceptibility testing of Helicobacter pylori : a comparison study.2020

    • Author(s)
      Miftahussurur M, Fauzia KA, Nusi IA, Setiawan PB, Syam AF, Waskito LA, Doohan D, Ratnasari N, Khomsan A, Adnyana IK, Akada J, Yamaoka Y.
    • Journal Title

      BMC Res Notes.

      Volume: 13 Issue: 1 Pages: 22-22

    • DOI

      10.1186/s13104-019-4877-9

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Multiomics investigation revealing the characteristics of HIV-1-infected cells in vivo2020

    • Author(s)
      Hirofumi Aso, Shumpei Nagaoka, Eiryo Kawakami, Jumpei Ito, Saiful Islam, Benjy Jek Yang Tan, Shinji Nakaoka, Koichi Ashizaki, Katsuyuki Shiroguchi, Yutaka Suzuki, Yorifumi Satou, Yoshio Koyanagi, Kei Sato
    • Journal Title

      Cell Reports

    • Description
      未定 in press
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tandem paired nicking promotes precise genome editing with scarce interference by p532020

    • Author(s)
      Hyodo T, Rahman ML, Karnan S, Ito T, Toyoda A, Ota A, Wahiduzzaman M, Tsuzuki S, Okada Y, Hosokawa Y, Konishi H
    • Journal Title

      Cell Reports

      Volume: 30 Pages: 1195-1207

    • DOI

      10.1016/j.celrep.2019.12.064

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chromatin organization in early land plants reveals an ancestral association between H3K27me3, transposons, and constitutive heterochromatin.2020

    • Author(s)
      Montgomery SA, Tanizawa Y, Galik B, Wang N, Ito T, Mochizuki T, Akimcheva S, Bowman JL, Cognat V, Drouard L, Ekker H, Houng SF, Kohchi T, Lin SS, Liu LYD, Nakamura Y, Valeeva LR, Shakirov EV, Shippen DE, Wei WL, Yagura M, Yamaoka S, Yamato KT, Liu C, Berger F.
    • Journal Title

      Curr. Biol.

      Volume: 30 Pages: 573-588

    • DOI

      10.1016/j.cub.2019.12.015

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Maternal almondex, a neurogenic gene, is required for proper subcellular Notch distribution in early Drosophila embryogenesis.2020

    • Author(s)
      Das, P., Salazar, J. L., Li-Kroeger, D., Yamamoto, S., Nakamura, M., Sasamura, T., Inaki, M., Masuda, W., Kitagawa, M., Yamakawa, M., and Matsuno, K.
    • Journal Title

      Dev. Grow. & Diff.

      Volume: 62 Pages: 80-93

    • DOI

      10.1111/dgd.12639

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Transient and lineage-restricted requirement of Ebf3 for sternum ossification2020

    • Author(s)
      Kuriki M, Sato F, Arai H, Sogabe M, Kaneko M, Kiyonari H, Kawakami K, Yoshimoto Y, Shukunami C, and Sehara-Fujisawa A.
    • Journal Title

      Development

      Volume: 147 Issue: 9

    • DOI

      10.1242/dev.186239

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] LncRNA-dependent nuclear stress bodies promote intron retention through SR protein phosphorylation2020

    • Author(s)
      Ninomiya, K., Adachi, S., Natsume, T., Iwakiri, J., Terai, G., Asai, K., Hirose, T.
    • Journal Title

      EMBO J

      Volume: 39

    • DOI

      10.15252/embj.2019102729

    • NAID

      120006876293

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] tRIP-seq reveals repression of premature polyadenylation by co-transcriptional FUS-U1 snRNP assembly.2020

    • Author(s)
      Masuda A, Kawachi T, Takeda JI, Ohkawara B, Ito M, Ohno K.
    • Journal Title

      EMBO reports

      Volume: -

    • DOI

      10.15252/embr.201949890

    • NAID

      120006884959

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The mechanoreceptor DEG-1 regulates cold tolerance in Caenorhabditis elegans2020

    • Author(s)
      Takagaki N., Ohta A., Ohnishi K., Kawanabe A., Minakuchi Y., Toyoda A., Fujiwara Y., Kuhara A.
    • Journal Title

      EMBO reports

      Volume: 21 Pages: 1-14

    • DOI

      10.15252/embr.201948671

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Physiological and genomic characterization of a new “Candidatus Nitrotoga” isolate2020

    • Author(s)
      Kento Ishii, Hirotsugu Fujitani, Yuji Sekiguchi, Satoshi Tsuneda
    • Journal Title

      Environmental Microbiology

      Volume: 22 Pages: 2365-2382

    • DOI

      10.1111/1462-2920.15015

    • Description
      オンラインのみ
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CNV analysis using whole exome sequencing identified biallelic CNVs of VPS13B in siblings with intellectual disability.2020

    • Author(s)
      Enomoto Y, Tsurusaki Y, Yokoi T, Abe-Hatano C, Ida K, Naruto T, Mitsui J, Tsuji S, Morishita S, Kurosawa K.
    • Journal Title

      Eur J Med Genet.

      Volume: 63 Issue: 1 Pages: 103610-103610

    • DOI

      10.1016/j.ejmg.2018.12.015

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Artificial generation of centromeres and kinetochores to understand their structure and function2020

    • Author(s)
      Tetsuya Hori, Tatsuo Fukagawa
    • Journal Title

      Exp Cell Res.

      Volume: 印刷中 Pages: 111898-111898

    • DOI

      10.1016/j.yexcr.2020.111898

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Geographical gradients of genetic diversity and differentiation among the southernmost marginal populations of Abies sachalinensis revealed by EST-SSR polymorphism2020

    • Author(s)
      Kitamura Keiko, Uchiyama Kentaro, Ueno Saneyoshi, Ishizuka Wataru, Tsuyama Ikutaro and Goto Susumu
    • Journal Title

      Forests

      Volume: 11 Pages: 233-233

    • DOI

      10.3390/f11020233

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular mechanisms underlying pupal protective color switch in Papilio polytes butterflies.2020

    • Author(s)
      Yoda, S., Otaguro, E. Nobuta, M. and Fujiwara, H
    • Journal Title

      Frontiers in Ecology and Evolution

      Volume: 8 Pages: 51-51

    • DOI

      10.3389/fevo.2020.00051

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Promoter tools for further development of Aspergillus oryzae as a platform for fungal secondary metabolite production.2020

    • Author(s)
      Maiko Umemura, Kaoru Kuriiwa, Linh Viet Dao, Tetsuya Okuda, Goro Terai
    • Journal Title

      Fungal Biology and Biotechnology

      Volume: 7 Pages: 3-3

    • DOI

      10.1186/s40694-020-00093-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Accumulation of deleterious mutations in landlocked threespine stickleback populations.2020

    • Author(s)
      Yoshida, K., Ravinet, M., Makino, T., Toyoda, A., Kokita, T., Mori, S., and Kitano, J.
    • Journal Title

      Genome Biology and Evolution

      Volume: 12 Pages: 479-492

    • DOI

      10.1093/gbe/evaa065

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Long read sequencing for non-small cell lung cancer genomes2020

    • Author(s)
      Yoshitaka Sakamoto, Liu Xu, Masahide Seki, Toshiyuki T. Yokoyama, Masahiro Kasahara, Yukie Kashima, Akihiro Ohashi, Yoko Shimada, Noriko Motoi, Katsuya Tsuchihara, Susumu S. Kobayashi, Takashi Kohno, Yuichi Shiraishi, Ayako Suzuki, Yutaka Suzuki
    • Journal Title

      Genome Research

    • Description
      未定 in press
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Common variant of LDL receptor related protein 2 (LRP2) gene is associated with gout susceptibility : meta-analysis in Japanese population2020

    • Author(s)
      Akashi A, Nakayama A, Kamatani Y, Higashino T, Shimizu S, Kawamura Y, Imoto M, Naito M, Hishida A, Kawaguchi M, Takao M, Matsuo M, Takada T, Ichida K, Ooyama H, Shinomiya N, Matsuo H
    • Journal Title

      Hum Cell.

      Volume: 33 Pages: 303307-303307

    • DOI

      10.1007/s13577-019-00318-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dictyobacter vulcani sp. nov., belonging to the class Ktedonobacteria, isolated from soil of the Mt Zao volcano2020

    • Author(s)
      Zheng, Y., Wang, C. M., Sakai, Y., Abe, K., Yokota, A., and Yabe, S
    • Journal Title

      Int. J. Syst. Evol. Microbiol

      Volume: 70 Pages: 1805-1813

    • DOI

      10.1099/ijsem.0.003975

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cd9 protects photoreceptors from injury and potentiates Edn2 expression2020

    • Author(s)
      Iwagawa, T., Aihara, Y., Umutoni, D. Baba, Y., Murakami, A. Miyado, K., Watanabe, S.
    • Journal Title

      Invest. Ophthalmol. Vis. Sci.

      Volume: 61 Pages: 43842-43842

    • DOI

      10.1167/iovs.61.3.7

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequences of Bifidobacterium animalis Consecutively Isolated from Healthy Japanese Individuals.2020

    • Author(s)
      Tsukimi T, Watabe T, Tanaka K, Sato MP, Suzuki H, Tomita M, Fukuda S.
    • Journal Title

      J Genomics

      Volume: 8 Pages: 37-42

    • DOI

      10.7150/jgen.38516

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Local Chromatin Motion and Transcription.2020

    • Author(s)
      Babokhov M, Hibino K, Itoh Y, Maeshima K.
    • Journal Title

      J Mol Biol.

      Volume: 432 Pages: 694-700

    • DOI

      10.1016/j.jmb.2019.10.018

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Restored interlaced volumetric imaging increases image quality and scanning speed during intravital imaging in living mice.2020

    • Author(s)
      Sogabe M, Ohzeki M, Fujimoto K, Sehara-Fujisawa A and Nishimura S.
    • Journal Title

      Journal of Biophotonics

      Volume: 13 Issue: 5 Pages: 201960204-201960204

    • DOI

      10.1002/jbio.201960204

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A new era of long-read sequencing for cancer genomics2020

    • Author(s)
      Yoshitaka Sakamoto, Sarun Sereewattanawoot, Ayako Suzuki
    • Journal Title

      Journal of Human Genetics

      Volume: 65 Pages: 3-10

    • DOI

      10.1038/s10038-019-0658-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Visualization tools for human structural variations identified by whole-genome sequencing2020

    • Author(s)
      Yokoyama, T. T. & Kasahara, M.
    • Journal Title

      Journal of Human Genetics

      Volume: 65 Pages: 49-60

    • DOI

      10.1038/s10038-019-0687-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Recent advances in the detection of base modifications using the Nanopore sequencer2020

    • Author(s)
      Liu Xu, Masahide Seki
    • Journal Title

      Journal of Human Genetics

      Volume: 65 Pages: 25-33

    • DOI

      10.1038/s10038-019-0679-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Diversity of Methylobacterium spp. in the Rice of the Vietnamese Mekong Delta2020

    • Author(s)
      Khoa Lai, Ngoc Thai Nguyen, Hiroki Miwa, Michiko Yasuda, Hiep Huu Nguyen, Shin Okazaki
    • Journal Title

      Microb. Environ.

      Volume: 35 Issue: 1 Pages: 1-5

    • DOI

      10.1264/jsme2.me19111

      10.1264/jsme2.ME19111

    • NAID

      130007789190

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcriptome analysis of the ammonia-oxidizing bacterium Nitrosomonas mobilis Msl reveals division of labor between aggregates and free-living cells2020

    • Author(s)
      Rino Isshiki, Hirotsugu Fujitani, Satoshi Tsuneda
    • Journal Title

      Microb. Environ.

      Volume: 35 Issue: 2 Pages: n/a

    • DOI

      10.1264/jsme2.me19148

      10.1264/jsme2.ME19148

    • NAID

      130007803080

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] VPS13D-related disorders presenting as a pure and complicated form of hereditary spastic paraplegia.2020

    • Author(s)
      Koh K, Ishiura H, Shimazaki H, Tsutsumiuchi M, Ichinose Y, Nan H, Hamada S, Ohtsuka T, Tsuji S, Takiyama Y.
    • Journal Title

      Mol Genet Genomic Med.

      Volume: 8 Issue: 3

    • DOI

      10.1002/mgg3.1108

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Endfoot regrowth for neural stem cell renewal.2020

    • Author(s)
      Tsuboi, M. and Gotoh, Y.
    • Journal Title

      Nature Cell Biology

      Volume: 22 Pages: 3-5

    • DOI

      10.1038/s41556-019-0448-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The role of Mediator and Little Elongation Complex in transcription termination.2020

    • Author(s)
      Takahashi H, Ranjan A, Chen S, Suzuki H, Shibata M, Hirose T, Hirose H, Sasaki K, Abe R, Chen K, He Y, Zhang Y, Takigawa I, Tsukiyama T, Watanabe M, Fujii S, Iida M, Yamamoto J, Yamaguchi Y, Suzuki Y, Matsumoto M, Nakayama K. I, Washburn M. P, Saraf A, Florens L, Sato S, Tomomori-Sato C, Conaway R. C, Conaway J. W, Hatakeyama S.
    • Journal Title

      Nat. Commun.

      Volume: 11 Pages: 1063-1063

    • DOI

      10.1038/s41467-020-14849-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] More dynamic, more quantitative, unexpectedly intricate : Advanced understanding on synaptic RNA localization in learning and memory2020

    • Author(s)
      R Roy, N Shiina, and D O Wang
    • Journal Title

      Neurobiol Learn and Mem

      Volume: 168 Pages: 107149-107149

    • DOI

      10.1016/j.nlm.2019.107149

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Short Tandem Repeat-Enriched Architectural RNAs in Nuclear Bodies : Functions and Associated Diseases2020

    • Author(s)
      Ninomiya, K. Hirose, T.
    • Journal Title

      Noncoding RNA

      Volume: 6 Pages: 6-6

    • DOI

      10.3390/ncrna6010006

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] LGP2 virus sensor enhances apoptosis by upregulating apoptosis regulatory genes through TRBP-bound miRNAs during viral infection.2020

    • Author(s)
      Takahashi T, Nakano Y, Onomoto K, Yoneyama M, Ui-Tei K.
    • Journal Title

      Nucleic Acids Res.

      Volume: 48 Pages: 1494-1507

    • DOI

      10.1093/nar/gkz1143

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] XCL1 expression correlates with CD8-positive T cells infiltration and PD-L1 expression in squamous cell carcinoma arising from mature cystic teratoma of the ovary.2020

    • Author(s)
      Tamura R, Yoshihara K, Nakaoka H, Yachida N, Yamaguchi M, Suda K, Ishiguro T, Nishino K, Ichikawa H, Homma K, Kikuchi A, Ueda Y, Takei Y, Fujiwara H, Motoyama T, Okuda S, Wakai T, Inoue I, Enomoto T.
    • Journal Title

      Oncogene

      Volume: 39 Pages: 3541-3554

    • DOI

      10.1038/s41388-020-1237-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chemotherapy after progression on nivolumab is essential for responders with genetic alterations of driver gene : Review of two recurrent/metastatic oral squamous cell carcinoma patients.2020

    • Author(s)
      Ogi K, Kobayashi J, Nakagaki T, Okamoto J, Koike K, Hirokawa N, Someya M, Sakamoto H, Takada K, Tokino T, Sasaki Y, Hiratsuka H, Miyazaki A.
    • Journal Title

      Oral Oncol.

      Volume: 102 Pages: 104509-104509

    • DOI

      10.1016/j.oraloncology.2019.104509

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Ficus erecta genome aids Ceratocystis canker resistance breeding in common fig (F. carica).2020

    • Author(s)
      Shirasawa K, Yakushiji H, Nishimura R, Morita T, Jikumaru S, Ikegami H, Toyoda A, Hirakawa H, Isobe S
    • Journal Title

      Plant J

    • DOI

      10.1111/tpj.14703

    • Description
      in press
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RNA-binding motifs of hnRNP K are critical for induction of antibody diversification by activation-induced cytidine deaminase2020

    • Author(s)
      Ziwei Yina, Maki Kobayashi, Wenjun Hu, Koichi, Higashi, Nasim A. Begum, Ken Kurokawa and Tasuku Honjo
    • Journal Title

      PNAS USA

      Volume: in press Pages: 11624-11635

    • DOI

      10.1073/pnas.1921115117

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of non-classic domestication2020

    • Author(s)
      Hideo Matsumura, Min-Chien Hsiao, Ya-Ping Lin, Atsushi Toyoda, Naoki Taniai4 Kazuhiko Tarora, Naoya Urasaki, Shashi S. Anand, Narinder P. S. Dhillon, Roland Schafleitner, Cheng-Ruei Lee
    • Journal Title

      Proceedings of the National Academy of Science USA

      Volume: 117

    • DOI

      10.1073/pnas.1921016117

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A robust model for quantitative prediction of the silencing efficacy of wild-type and A-to-I edited miRNAs.2020

    • Author(s)
      Tian S, Terai G, Kobayashi Y, Kimura Y, Abe H, Asai K, Ui-Tei K.
    • Journal Title

      RNA Biology

      Volume: 17 Pages: 264-280

    • DOI

      10.1080/15476286.2019.1678364

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Role of the imprinted allele of the Cdknlc gene in mouse neocortical development.2020

    • Author(s)
      Imaizumi, Y., Furutachi, S., Watanabe, T., Miya, H., Kawaguchi, D., Gotoh, Y.
    • Journal Title

      Sci. Rep.

      Volume: 10 Pages: 1884-1884

    • DOI

      10.1038/s41598-020-58629-9

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes2020

    • Author(s)
      Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
    • Journal Title

      Scientific Reports

      Volume: 10 Pages: 37-37

    • DOI

      10.1038/s41598-019-56881-2

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Modeling of early neural development in vitro by direct neurosphere formation culture of chimpanzee induced pluripotent stem cells2020

    • Author(s)
      Ryunosuke Kitajima, Risako Nakai, Takuya Imamura, Tomonori Kameda, Daiki Kozuka, Hirohisa Hirai, Haruka Ito, Hiroo Imai, Masanori Imamura
    • Journal Title

      Stem Cell Research

      Volume: 44 Pages: 101749-101749

    • DOI

      10.1016/j.scr.2020.101749

    • NAID

      120006813300

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Whole-genome sequencing and comparative transcriptome analysis of Bombyx mori nucleopolyhedrovirus La strain2020

    • Author(s)
      Fujimoto S, Kawamoto M, Shoji K, Suzuki Y, Katsuma S, Iwanaga M
    • Journal Title

      Virus Genes

      Volume: 56 Pages: 249-259

    • DOI

      10.1007/s11262-019-01727-2

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] What is the switch for coupling transcription and splicing? RNA Polymerase II C-terminal domain phosphorylation, phase separation and beyond. (Review)2020

    • Author(s)
      Hiroshi Maita, Shinichi Nakagawa
    • Journal Title

      Wiley Interdiscip Rev RNA.

      Volume: 11

    • DOI

      10.1002/wrna.1574

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamics of kinetochore structure and its regulations during mitotic progression.2020

    • Author(s)
      Masatoshi Hara, and Tatsuo Fukagawa
    • Journal Title

      Cell Mol Life Sci.

      Volume: 印刷中 Pages: 2981-2995

    • DOI

      10.1007/s00018-020-03472-4

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Metalloprotease-dependent attenuation of BMP signaling restricts cardiac neural crest cell fate.2020

    • Author(s)
      Arai H, Sato F, Yamamoto T, Woltjen K, Kiyonari H, Yoshimoto Y, Shukunami C, Akiyama H, Kist R, Sehara-Fujisawan A.
    • Journal Title

      Cell Reports

      Volume: 29 Pages: 603-616

    • DOI

      10.1016/j.celrep.2019.09.019

    • NAID

      120006731597

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genetic isolation by distance in the yellowfin goby populations revealed by RAD sequencing.2020

    • Author(s)
      Shotaro Hirase, Ayumi Tezuka, Atsushi J, Nagano, Kiyoshi Kikuchi, and Wataru Iwasaki.
    • Journal Title

      Ichthyological Research

      Volume: 67 Pages: 98-104

    • DOI

      10.1007/s10228-019-00709-6

    • NAID

      40022132569

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Assessment of Polygala paniculata (Polygalaceae) characteristics for evolutionary studies of legume-rhizobia symbiosis.2020

    • Author(s)
      Yuji Tokumoto, Kayo Hashimoto, Takashi Soyano, Seishiro Aoki, Wataru Iwasaki, Mai Fukuhara, Tomomi Nakagawa, Kazuhiko Saeki, Jun Yokoyama, Hironori Fujita, and Masayoshi Kawaguchi.
    • Journal Title

      Journal of Plant Research

      Volume: 133 Pages: 109-122

    • DOI

      10.1007/s10265-019-01159-x

    • NAID

      40022129850

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of a novel Helicobacter pylori East Asian-type CagA ELISA for detecting patients infected with various cagA genotypes.2020

    • Author(s)
      Doohan D, Miftahussurur M, Matsuo Y, Kido Y, Akada J, Matsuhisa T, Yee TT, Htet K, Aftab H, Vilaichone RK, Mahachai V, Ratanachu-Ek T, Tshering L, Waskito LA, Fauzia KA, Uchida T, Syam AF, Rezkitha YAA, Yamaoka Y.
    • Journal Title

      Med Microbiol Immunol

      Volume: 209 Pages: 29-40

    • DOI

      10.1007/s00430-019-00634-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An Optimized Metabarcoding Method for Mimiviridae2020

    • Author(s)
      Prodinger F, Endo H, Gotoh Y, Li Y, Morimoto D, Omae K, Tominaga K, Blanc-Mathieu R, Takano Y, Hayashi T, Nagasaki K, Yoshida T, Ogata H.
    • Journal Title

      Microorganisms

      Volume: 8 Pages: 506-506

    • DOI

      10.3390/microorganisms8040506

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] キンギョの多様な表現型と全ゲノム重複 : 疾患モデル動物としての展開2020

    • Author(s)
      大森 義裕
    • Journal Title

      体の科学

    • Description
      in press
    • Related Report
      2019 Annual Research Report
  • [Journal Article] キンギョの遺伝子は普通の魚の約2倍!-キンギョが様々な形や色を持つ理由-2020

    • Author(s)
      大森 義裕
    • Journal Title

      きんぎょ生活

      Volume: 6

    • Related Report
      2019 Annual Research Report
  • [Journal Article] 双翅目昆虫の交尾体位と生殖器形態の共進化の謎に迫る2020

    • Author(s)
      稲富桃子, Shin Dungsun, Lai Yi-Ting, 松本竜実, 松野健治
    • Journal Title

      昆虫と自然

      Volume: 55 Pages: 23-26

    • Related Report
      2019 Annual Research Report
  • [Journal Article] 性染色体獲得のジレンマー性染色体は進化の袋小路か?2020

    • Author(s)
      野澤昌文
    • Journal Title

      日本の科学者

    • Description
      印刷中
    • Related Report
      2019 Annual Research Report
  • [Journal Article] Cooperation of Spaln and Prrn5 for construction of gene-structure-aware multiple sequence alignment2020

    • Author(s)
      Gotóh, O.
    • Journal Title

      Methods in Molecular Biology

    • Description
      in press
    • Related Report
      2019 Annual Research Report
  • [Journal Article] The Story of Helicobacter pylori : Depicting Human Migrations from the Phylogeography.2019

    • Author(s)
      Waskito LA, Yamaoka Y.
    • Journal Title

      Adv Exp Med Biol.

      Volume: 1149 Pages: 1-16

    • DOI

      10.1007/5584_2019_356

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.2019

    • Author(s)
      Kawamura Y, Nakaoka H, Nakayama A, Okada Y, Yamamoto K, Higashino T, Sakiyama M, Shimizu T, Ooyama H, Ooyama K, Nagase M, Hidaka Y, Shirahama Y, Hosomichi K, Nishida Y, Shimoshikiryo I, Hishida A, Katsuura-Kamano S, Shimizu S, Kawaguchi M, Uemura H, Ibusuki R, Hara M, Naito M, Takao M, Nakajima M, Iwasawa S, Nakashima H, Ohnaka K, M, Hosoya T, Ichida K, Inoue I, Shinomiya N, Matsuo H, et al.
    • Journal Title

      Ann Rheum Dis.

      Volume: 78 Pages: 14301437-14301437

    • DOI

      10.1136/annrheumdis-2019-215521

    • NAID

      120006877873

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Hedgehog-related genes regulate reactivation of quiescent neural progenitors in Caenorhabditis elegans.2019

    • Author(s)
      Kume M, Chiyoda H, Kontani K, Katada T, Fukuyama M
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 520 Pages: 532-537

    • DOI

      10.1016/j.bbrc.2019.10.045

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discovering novel mutation signatures by latent Dirichlet allocation with variational Bayes inference2019

    • Author(s)
      Taro Matsutani, Yuki Ueno, Tsukasa Fukunaga, Michiaki Hamada
    • Journal Title

      Bioinformatics

      Volume: 35 Issue: 22 Pages: 4543-4552

    • DOI

      10.1093/bioinformatics/btz266

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] FuncTree2 : an interaotive radial tree for functional hierarchies and omics data visualization2019

    • Author(s)
      Y Darzi, Y Yamate, T Yamada
    • Journal Title

      Bioinformatics

      Volume: 35 Pages: 4519-4521

    • DOI

      10.1093/bioinformatics/btz245

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] MoMI-G : Modular multi-scale integrated genome graph browser.2019

    • Author(s)
      Yokoyama, T. T., Sakamoto, Y., Seki, M., Suzuki, Y. & Kasahara, M.
    • Journal Title

      BMC Bioinformatics

      Volume: 20 Pages: 548-548

    • DOI

      10.1186/s12859-019-3145-2

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic.2019

    • Author(s)
      Ono Takaaki、Cruz Modesto、Jimenez Abreu Jose A.、Nagashima Hiroyuki、Subsomwong Phawinee、Hosking Celso、Shiota Seiji、Suzuki Rumiko、Yamaoka Yoshio
    • Journal Title

      BMC Evol Biol.

      Volume: 19 Issue: 1 Pages: 197-197

    • DOI

      10.1186/s12862-019-1526-9

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Significant epitranscriptomes in heterogeneous cancer.2019

    • Author(s)
      Konno, M., Taniguchi, M., Ishii, H.
    • Journal Title

      Cancer Sci.

      Volume: 110 Pages: 2318-2327

    • DOI

      10.1111/cas.14095

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Western-Type Helicobacter pylori CagA are the Most Frequent Type in Mongolian Patients.2019

    • Author(s)
      Tserentogtokh T, Gantuya B, Subsomwong P, Oyuntsetseg K, Bolor D, Erdene-Ochir Y, Azzaya D, Davaadorj D, Uchida T, Matsuhisa T, Yamaoka Y.
    • Journal Title

      Cancers (Basel)

      Volume: 11

    • DOI

      10.3390/cancers11050725

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Gastric Microbiota in Helicobacter pylori-Negative and -Positive Gastritis Among High Incidence of Gastric Cancer Area.2019

    • Author(s)
      Gantuya B, El-Serag HB, Matsumoto T, Ajami NJ, Oyuntsetseg K, Azzaya D, Uchida T, Yamaoka Y.
    • Journal Title

      Cancers (Basel)

      Volume: 11 Pages: 504-504

    • DOI

      10.3390/cancers11040504

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Biosynthetic Short Neuropeptides : A Rational Theory Based on Experimental Results for the Missing Pain-Relief Opioid Endomorphin Precursor Gene2019

    • Author(s)
      Matsushima, A., Sese, J., & Koyanagi, K. O.
    • Journal Title

      ChemBioChem

      Volume: 20 Pages: 2054-2058

    • DOI

      10.1002/cbic.201900317

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The mimetic wing pattern of Papilio polytes butterflies is regulated by a doublesex-orchestrated gene network2019

    • Author(s)
      Iijima T, Yoda S, Fujiwara H
    • Journal Title

      Commun Biol.

      Volume: 2 Pages: 257-257

    • DOI

      10.1038/s42003-019-0510-7

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi.2019

    • Author(s)
      Sira Sriswasdi, Masako Takashima, Ri-ichiroh Manabe, Moriya Ohkuma, and Wataru Iwasaki.
    • Journal Title

      Communications Biology

      Volume: 2 Pages: 263-263

    • DOI

      10.1038/s42003-019-0515-2

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism.2019

    • Author(s)
      Yoshida, S., Kim, S., Wafula, E. K., Tanskanen, J., Kim, Y. -M., Honaas, L., et al.
    • Journal Title

      Curr. Biol.

      Volume: 29 Pages: 3041-3052

    • DOI

      10.1016/j.cub.2019.07.086

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Diverse gene regulatory mechanisms mediated by Polycomb group proteins during neural development2019

    • Author(s)
      Tsuboi, M., Hirabayashi, Y. and Gotoh, Y.
    • Journal Title

      Current Opinion in Neurobiology

      Volume: 59 Pages: 164-173

    • DOI

      10.1016/j.conb.2019.07.003

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A SNP in a steroidogenic enzyme is associated with phenotypic sex in Seriola fishes.2019

    • Author(s)
      Koyama K., M. Nakamoto, K. Morishima, R. Yamashita, T. Yamashita, K. Sasaki, Y. Kuruma, N. Mizuno, M. Suzuki, Y. Okada, R. Ieda, T. Uchino, S. Tasumi, S. Hosoya, S. Uno, J. Koyama, A. Toyoda, K. Kikuchi, T. Sakamoto
    • Journal Title

      Current Biol

      Volume: 29 Pages: 1901-1909

    • DOI

      10.1016/j.cub.2019.04.069

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Lack of whey acidic protein (WAP) four-disulfide core domain protease inhibitor 2 (WFDC2) causes neonatal death from respiratory failure in mice2019

    • Author(s)
      Nakajima K, Ono M, Radovic U, Dizdarevic S, Tomizawa SI, Kuroha K, Nagamatsu G, Hoshi I, Matsunaga R, Shirakawa T, Kurosawa T, Miyazaki Y, Seki M, Suzuki Y, Koseki H, Nakamura M, Suda T, Ohbo K.
    • Journal Title

      Disease Models & Mechanisms

      Volume: 12 Pages: 1-13

    • DOI

      10.1242/dmm.040139

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes.2019

    • Author(s)
      Sato MP, Ogura Y, Nakamura K, Nishida R, Gotoh Y, Hayashi M, Hisatsune J, Sugai M, Takehiko I, Hayashi T.
    • Journal Title

      DNA Res.

      Volume: 26 Pages: 391-398

    • DOI

      10.1093/dnares/dsz017

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The histone modification H3 lysine 27 tri-methylation has conserved gene regulatory roles in the triplicated genome of Brassica rapa L.2019

    • Author(s)
      Akter A, Takahashi S, Deng W, Shea DJ, Itabashi E, Shimizu M, Miyaji N, Osabe K, Nishida N, Suzuki Y, Helliwell CA, Seki M, Peacock WJ, Dennis ES, Fujimoto R.
    • Journal Title

      DNA Research

      Volume: 26 Pages: 433-443

    • DOI

      10.1093/dnares/dsz021

    • NAID

      120006786953

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization.2019

    • Author(s)
      Dudin, O., A. Ondracka, X. Grau-Bove, A. A. Haraldsen, A. Toyoda, H. Suga, J. Brate and I. Ruiz-Trillo
    • Journal Title

      Elife

      Volume: 8

    • DOI

      10.7554/elife.49801

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Masc-induced dosage compensation in silkworm cultured cells2019

    • Author(s)
      Katsuma S, Shoji K, Sugano Y, Suzuki Y, Kiuchi T
    • Journal Title

      FEBS Open Bio

      Volume: 9 Pages: 1573-1579

    • DOI

      10.1002/2211-5463.12698

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic Features of Rickettsia heilongjiangensis Revealed by Intraspecies Comparison and Detailed Comparison With Rickettsia japonica.2019

    • Author(s)
      Kasama K, Fujita H, Yamamoto S, Ooka T, Gotoh Y, Ogura Y, Ando S, Hayashi T.
    • Journal Title

      Front. Microbiol.

      Volume: 6

    • DOI

      10.3389/fmicb.2019.02787

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Initial Trials With Susceptibility-Based and Empiric Anti-H. pylori Therapies in Mongolia.2019

    • Author(s)
      Byambajav TO, Bira N, Choijamts G, Davaadorj D, Gantuya B, Sarantuya T, Sarantuya G, Enkhtsetseg A, Erdenetsogt D, Battulga A, Tserentogtokh T, Matsuhisa T, Yamaoka Y, Oyuntsetseg K.
    • Journal Title

      Front Pharmacol.

      Volume: 10 Pages: 394-394

    • DOI

      10.3389/fphar.2019.00394

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Streptococcus pneumoniae evades host cell phagocytosis and limits host mortality through its cell wall anchoring protein PfbA.2019

    • Author(s)
      Yamaguchi M., Hirose Y., Takemura M., Ono M., Sumitomo T., Nakata M., Terao Y., Kawabata S.
    • Journal Title

      Front. Cell. Infect. Microbiol.

      Volume: 9 Pages: 301-301

    • DOI

      10.3389/fcimb.2019.00301

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] LncRRIsearch : a web server for IncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization data2019

    • Author(s)
      Tsukasa Fukunaga, Junichi Iwakiri, Yukiteru Ono, Michiaki Hamada
    • Journal Title

      Frontiers in Genetics

      Volume: - Pages: 462-462

    • DOI

      10.3389/fgene.2019.00462

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Haustorium Inducing Factors for Parasitic Orobanchaceae.2019

    • Author(s)
      Goyet, V., Wada, S., Cui, S., Wakatake, T., Shirasu, K., Montiel, G., Simier, P. and Yoshida S.
    • Journal Title

      Frontiers in Plant Science

      Volume: 10 Pages: 1056-1056

    • DOI

      10.3389/fpls.2019.01056

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A carrier protein is essential for the action of silver nanoparticles in an animal experiment2019

    • Author(s)
      Masami Ishido
    • Journal Title

      Fundam. Toxicol. Sci.

      Volume: 6 Issue: 7 Pages: 277-279

    • DOI

      10.2131/fts.6.277

    • NAID

      130007731820

    • ISSN
      2189-115X
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Plagl regulates neuronal gene expression and neuronal differentiation of neocortical neural progenitor cells2019

    • Author(s)
      Hiroshi Sakai, Yuki Fujii, Naohiro Kuwayama, Keita Kawaji, Yukiko Gotoh, and Yusuke Kishi
    • Journal Title

      Genes to Cells

      Volume: 24 Pages: 650-666

    • DOI

      10.1111/gtc.12718

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] E and ID proteins regulate cell chirality and left-right asymmetric development in Drosophila.2019

    • Author(s)
      Ishibashi, T., Hatori, R., Maeda, R., Nakamura, M., Matsuyama, Y., and Matsuno, K.
    • Journal Title

      Genes to Cells

      Volume: 24 (3) Pages: 214-230

    • DOI

      10.1111/gtc.12669

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains.2019

    • Author(s)
      Arimizu Y, Kirino Y, Sato MP, Uno K, Sato T, Gotoh Y, Auvray F, Brugere H, Oswald E, Mainil JG, Anklam KS, Dopfer D, Yoshino S, Ooka T, Tanizawa Y, Nakamura Y, Iguchi A, Morita-Ishihara T, Ohnishi M, Akashi K, Hayashi T, Ogura Y
    • Journal Title

      Genome Res.

      Volume: 29 Pages: 1495-1505

    • DOI

      10.1101/gr.249268.119

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genome-wide mutation analysis of Helicobacter pylori after inoculation to Mongolian gerbils.2019

    • Author(s)
      Suzuki R, Satou K, Shiroma A, Shimoji M, Teruya K, Matsumoto T, Akada J, Hirano T, Yamaoka Y.
    • Journal Title

      Gut Pathog

      Volume: 11 Pages: 45-45

    • DOI

      10.1186/s13099-019-0326-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Changes of tight junction and interleukin-8 expression using a human gastroid monolayer model of Helicobacter pylori infection.2019

    • Author(s)
      Uotani T, Murakami K, Uchida T, Tanaka S, Nagashima H, Zeng XL, Akada J, Estes MK, Graham DY, Yamaoka Y.
    • Journal Title

      Helicobacter

      Volume: 24

    • DOI

      10.1111/hel.12583

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Different mutation profiles between epithelium and stroma in endometriosis and normal endometrium2019

    • Author(s)
      Suda K, Nakaoka H, Yoshihara K, Ishiguro T, Adachi S, Kase H, Motoyama T, Inoue I, Enomoto T.
    • Journal Title

      Human Reproduction

      Volume: 34 Pages: 1899-1905

    • DOI

      10.1093/humrep/dez155

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel Sequence Type in Bacillus cereus Strains Associated with Nosocomial Infections and Bacteremia, Japan.2019

    • Author(s)
      Akamatsu R, Suzuki M, Okinaka K, Sasahara T, Yamane K, Suzuki S, Fujikura D, Furuta Y, Ohnishi N, Esaki M, Shibayama K, Higashi H.
    • Journal Title

      Infect Dis.

      Volume: 25(5) Pages: 883-890

    • DOI

      10.3201/eid2505.171890

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High-quality genome assembly of the silkworm, Bombyx mori.2019

    • Author(s)
      Kawamoto, M., A. Jouraku, A. Toyoda, K. Yokoi, Y. Minakuchi, S. Katsuma, A. Fujiyama, T. Kiuchi, K. Yamamoto and T. Shimada
    • Journal Title

      Insect Biochem Mol Biol

      Volume: 107 Pages: 53-62

    • DOI

      10.1016/j.ibmb.2019.02.002

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Thermogemmatispora aurantia sp. nov. and Thermogemmatispora argillosa sp. nov., within the class Ktedonobacteria, and emended description of the genus Thermogemmatispora2019

    • Author(s)
      Zheng, Y., Wang, C. M., Sakai, Y., Abe, K., Yokota, A., & Yabe, S.
    • Journal Title

      Int. J. Syst. Evol. Microbiol

      Volume: 69 Pages: 1744-1750

    • DOI

      10.1099/ijsem.0.003388

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tengunoibacter tsumagoiensis gen. nov., sp. nov., Dictyobacter kobayashii sp. nov., Dictyobacter alpinus sp. nov., and description of Dictyobacteraceae fam. nov. within the order Ktedonobacterales isolated from Tengu-no-mugimeshi, a soil-like granular mass of micro-organisms, and emended descriptions of the genera Ktedonobacter and Dictyobacter2019

    • Author(s)
      Wang, C. M., Zheng, Y., Sakai, Y., Toyoda, A., Minakuchi, Y., Abe, K., Yokota, A. & Yabe, S
    • Journal Title

      Int. J. Syst. Evol. Microbiol

      Volume: 69 Pages: 1910-1918

    • DOI

      10.1099/ijsem.0.003396

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Next-Generation Sequencing-Based Approach to Identify Genetic Determinants of Antibiotic Resistance in Cambodian Helicobacter pylori Clinical Isolates.2019

    • Author(s)
      Tuan VP, Narith D, Tshibangu-Kabamba E, Dung HDQ, Viet PT, Sokomoth S, Binh TT, Sokhem S, Tri TD, Ngov S, Tung PH, Thuan NPM, Truc TC, Phuc BH, Matsumoto T, Fauzia KA, Akada J, Trang TTH, Yamaoka Y.
    • Journal Title

      J Clin Med

      Volume: 8 Issue: 6 Pages: 858-858

    • DOI

      10.3390/jcm8060858

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Peroxisomes control mitochondrial dynamics and the mitochondrion-dependent pathway of apoptosis2019

    • Author(s)
      Tanaka H., Okazaki T., Aoyama S., Yokota M., Koike M., Okada Y., Fujiki Y. and Gotoh Y.
    • Journal Title

      JOURNAL OF CELL SCIENCE

      Volume: -

    • DOI

      10.1242/jcs.224766

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CDK1-mediated CENP-C phosphorylation modulates CENP-A binding and mitotic kinetochore localization.2019

    • Author(s)
      Watanabe R, Hara M, Okumura EI, Herv S, Fachinetti D, Ariyoshi M, Fukagawa T
    • Journal Title

      Journal of Cell Biology

      Volume: 218 Pages: 4042-4062

    • DOI

      10.1083/jcb.201907006

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] O-antigen biosynthesis gene clusters of Escherichia albertii : their diversity and similarity to Escherichia coli gene clusters and the development of an O-genotyping method.2019

    • Author(s)
      Ooka T, Seto K, Ogura Y, Nakamura K, Iguchi A, Gotoh Y, Honda M, Etoh Y, Ikeda T, Sugitani W, Konno T, Kawano K, Imuta N, Yoshiie K, Hara-Kudo Y, Murakami K, Hayashi T, Nishi J.
    • Journal Title

      Microb Genom.

      Volume: 5(11) Issue: 11

    • DOI

      10.1099/mgen.0.000314

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The earth is small for "leviathans" : long distance dispersal of giant viruses across aquatic environments2019

    • Author(s)
      Li Y., Endo H., Gotoh Y., Watai H., Ogawa N., Blanc-Mathieu R., Yoshida T., Ogata H.
    • Journal Title

      Microb. Environ.

      Volume: 34 Issue: 3 Pages: 334-339

    • DOI

      10.1264/jsme2.me19037

      10.1264/jsme2.ME19037

    • NAID

      130007711567

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline : BactSNP2019

    • Author(s)
      Yoshimura D, Kajitani R, Gotoh Y, Katahira K, Okuno M, Ogura Y, Hayashi T, Itoh T
    • Journal Title

      Microbial genomics

      Volume: 5

    • DOI

      10.1099/mgen.0.000261

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequences of Enterococcus faecalis Strains Isolated from Healthy Japanese Individuals.2019

    • Author(s)
      Tanaka K, Watabe T, Kato K, Tsukimi T, Sato MP, Odamaki T, Tomita M, Fukuda S.
    • Journal Title

      Microbiol Resour Announc.

      Volume: 8

    • DOI

      10.1128/mra.00832-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequence of Acidovorax sp. Strain NB1, Isolated from a Nitrite-Oxidizing Enrichment Culture2019

    • Author(s)
      Hiroto Ide, Kento Ishii, Hirotsugu Fujitani, Satoshi Tsuneda
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8

    • DOI

      10.1128/mra.00547-19

    • Description
      オンラインのみ
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A fast Likelihood method to reconstruct and visualize ancestral scenarios.2019

    • Author(s)
      Sohta A Ishikawa, Anna Zhukova, Wataru Iwasaki, and Olivier Gascuel.
    • Journal Title

      Molecular Biology and Evolution

      Volume: 36 Pages: 2069-2085

    • DOI

      10.1093/molbev/msz131

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.2019

    • Author(s)
      Kajitani, R., D. Yoshimura, M. Okuno, Y. Minakuchi, H. Kagoshima, A. Fujiyama, K. Kubokawa, Y. Kohara, A. Toyoda and T. Itoh
    • Journal Title

      Nat Commun

      Volume: - Issue: 1 Pages: 1-15

    • DOI

      10.1038/s41467-019-09575-2

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Noncoding CGG repeat expansions in neuronal intranuclear inclusion disease, oculopharyngodistal myopathy and an overlapping disease.2019

    • Author(s)
      Ishiura H, Shibata S, Yoshimura J, Suzuki Y, Qu W, Doi K, Almansour MA, Kikuchi JK, Taira M, Mitsui J, Takahashi Y, Ichikawa Y, Mano T, Iwata A, Harigaya Y, Matsukawa MK, Matsukawa T, Tanaka M, Shirota Y, Ohtomo R, Kowa H, Date H, Mitsue A, Hatsuta H, Morimoto S, Murayama S, Shiio Y, Saito Y, Mitsutake A, Kawai M, Sasaki T, Sugiyama Y, Hamada M, Ohtomo G, Terao Y, Morishita S, Tsuji S, et al.
    • Journal Title

      Nat Genet.

      Volume: 51 Issue: 8 Pages: 1222-1232

    • DOI

      10.1038/s41588-019-0458-z

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer.2019

    • Author(s)
      Yachida, S., S. Mizutani, H. Shiroma, S. Shiba, T. Nakajima, T. Sakamoto, H. Watanabe, K. Masuda, Y. Nishimoto, M. Kubo, F. Hosoda, H. Rokutan, M. Matsumoto, H. Takamaru, M. Yamada, T. Matsuda, M. Iwasaki, T. Yamaji, T. Yachida, T. Soga, K. Kurokawa, A. Toyoda, Y. Ogura, T. Hayashi, M. Hatakeyama, H. Nakagama, Y. Saito, S. Fukuda, T. Shibata and T. Yamada
    • Journal Title

      Nat Med

      Volume: 25 Issue: 6 Pages: 968-976

    • DOI

      10.1038/s41591-019-0458-7

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Distinct Methylation Levels of Mature MicroRNAs in Gastrointestinal Cancers.2019

    • Author(s)
      Konno, M., Koseki, J., Ishii, H
    • Journal Title

      Nature Commun.

      Volume: 10 Pages: 3888-3888

    • DOI

      10.1038/s41467-019-11826-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation2019

    • Author(s)
      Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Nicola Segata, et al.
    • Journal Title

      Nature Madicine

      Volume: 25 Pages: 667-678

    • DOI

      10.1038/s41591-019-0663-4

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer2019

    • Author(s)
      Jakob Wirbel, Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese, Jonas S Fleck, Anita Y Voigt, Albert Palleja, Ruby Ponnudurai, Shinichi Sunagawa, Luis Pedro Coelho, Petra Schrotz-King, Emily Vogtmann, Nina Habermann, Emma Nimeus, Andrew M Thomas, Paolo Manghi, Sara Gandini, Davide Serrano, Sayaka Mizutani, Hirotsugu Shiroma, Georg Zeller, et al.
    • Journal Title

      Nature Madicine

      Volume: 25 Pages: 679-689

    • DOI

      10.1038/s41591-019-0406-6

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Auxin-mediated rapid degradation of target proteins in hippocampal neurons2019

    • Author(s)
      Nakano R, Ihara N, Morikawa S, Nakashima A, Kanemaki MT, Ikegaya Y, and Takeuchi H.
    • Journal Title

      neuroreport

      Volume: 30 Pages: 908-913

    • DOI

      10.1097/wnr.0000000000001299

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Translation-dependent unwinding of stem-loops by UPF1 licenses Regnase-1 to degrade inflammatory mRNAs.2019

    • Author(s)
      Mino, T., Iwai, N., Endo, M., Inoue, K., Akaki, K., Hia, F., Uehata, T., Emura, T., Hidaka, K., Suzuki, Y., Standley, D. M., Okada-Hatakeyama, M., Ohno, S., Sugiyama, H., Yamashita, A., Takeuchi, O.
    • Journal Title

      Nucleic Acids Research

      Volume: 47 Pages: 8838-8859

    • DOI

      10.1093/nar/gkz628

    • NAID

      120006708220

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genome Sequencing Verifies Relapsed Infection of Helicobacter cinaedi.2019

    • Author(s)
      Sawada O, Gotoh Y, Taniguchi T, Furukawa S, Yoshimura D, Sasaki S, Shida H, Kusunoki Y, Yamamura T, Furuya K, Itoh T, Horita T, Hayashi T, Misawa N.
    • Journal Title

      Open Forum Infect Dis.

      Volume: 印刷中

    • DOI

      10.1093/ofid/ofz200

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] SIMON : Simple methods for analyzing DNA methylation by targeted bisulfite next-generation sequencing.2019

    • Author(s)
      Vial-Pradel S., Hasegawa Y., Nakagawa A., Miyaki S., Machida Y., Kojima S., *Machida C., *Takahashi H.
    • Journal Title

      Plant Biotechnology

      Volume: 36 Issue: 4 Pages: 213-222

    • DOI

      10.5511/plantbiotechnology.19.0822a

    • NAID

      130007776104

    • ISSN
      1342-4580, 1347-6114
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] High mesophy11 conductance in the high-yielding rice cultivar Takanari quantified with the combined gas exchange and chlorophy11 fluorescence measurements under free-air CO2 enrichmen2019

    • Author(s)
      Ikawa, H., Sakai, H., Chen, C. P., Soong, T. H., Yonemura, S., Taniguchi, Y., Yoshimoto, M., Tokida, Zhang, G., T., Kuwagata, et al.
    • Journal Title

      Plant Production Science

      Volume: 22 Pages: 395-406

    • DOI

      10.1080/1343943x.2019.1626253

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Transcriptional regulatory divergence underpinning species-specific learned vocalization in songbirds.2019

    • Author(s)
      Wang H, Sawai A, Toji N, Sugioka R, Shibata Y, Suzuki Y, Ji Y, Hayase S, Akama S, Sese J, Wada K.
    • Journal Title

      PLoS Biology

      Volume: 17

    • DOI

      10.1371/journal.pbio.3000476

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DIpartite : A tool for detecting bipartite motifs by considering base interdependencies2019

    • Author(s)
      Vahed M, Ishihara JI, Takahashi H
    • Journal Title

      PLoS One

      Volume: 14(8): e0220207 Issue: 8 Pages: 1-14

    • DOI

      10.1371/journal.pone.0220207

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of risks of gastric cancer by gastric mucosa among Indonesian ethnic groups.2019

    • Author(s)
      Miftahussurur M, Waskito LA, Syam AF, Nusi IA, Wibawa IDN, Rezkitha YAA, Siregar G, Yulizal OK, Akil F, Uwan WB, Simanjuntak D, Waleleng JB, Saudale AMJ, Yusuf F, Maulahela H, Richardo M, Rahman A, Namara YS, Sudarmo E, Adi P, Maimunah U, Setiawan PB, Fauzia KA, Doohan D, Uchida T, Lusida MI, Yamaoka Y.
    • Journal Title

      PLoS One

      Volume: 14

    • DOI

      10.1371/journal.pone.0216670

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.2019

    • Author(s)
      David M. Needham, Susumu Yoshizawa, Toshiaki Hosaka, Camille Poirier, Chang Jae Choi, Elisabeth Hehenberger, Nicholas A. T. Irwin, Susanne Wilken, Cheuk-Man Yung, Charles Bachy, Rika Kurihara, Yu Nakajima, Keiichi Kojima, Tomomi Kimura-Someya, Guy Leonard, Rex R. Malmstrom, Daniel R. Mende, Daniel K. Olson, Yuki Sudo, Sebastian Sudek, Wataru Iwasaki, and Alexandra Z. Worden, et al.
    • Journal Title

      Proc Nat1 Acad Sci U S A

      Volume: 116 Pages: 20574-20583

    • DOI

      10.1073/pnas.1907517116

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Organization of fast and slow chromatin revealed by single-nucleosome dynamics.2019

    • Author(s)
      Ashwin SS, Nozaki T, Maeshima K, Sasai M.
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 116 Pages: 19939-19944

    • DOI

      10.1073/pnas.1907342116

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Arsenate and microbial dynamics in different phosphorus regimes of the subtropical Pacific Ocean.2019

    • Author(s)
      Hashima F, Suwa S, Kanda J, Ehama M, Sakuraba R, Kinouchi S, Sato M, Yamaguchi T, Saito H, Ogura Y, Hayashi T, Mori H, Kurokawa K, Suzuki S, Hamasaki K
    • Journal Title

      Progrss in Oceanography

      Volume: 176 Pages: 102115-102115

    • DOI

      10.1016/j.pocean.2019.05.007

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proper direction of male genitalia is prerequisite for copulation in Drosophila, implying cooperative evolution between genitalia rotation and mating behavior.2019

    • Author(s)
      Inatomi, M., Shin, D., Lai, Y. -T., and Matsuno, K.
    • Journal Title

      Sci. Rep.

      Volume: 9 (1) Pages: 210-210

    • DOI

      10.1038/s41598-018-36301-7

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structured spike series specify gene expression patterns for olfactory circuit formation2019

    • Author(s)
      Nakashima, A., Ihara, N., Shigeta, M., Kiyonari, H., Ikegaya, Y., Takeuchi, H.
    • Journal Title

      Science

      Volume: 365(6448)

    • DOI

      10.1126/science.aaw5030

    • NAID

      40022209430

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Characterization of cancer omics and drug perturbations in panels of lung cancer cells2019

    • Author(s)
      Suzuki Ayako、Onodera Keiichi、Matsui Ken、Seki Masahide、Esumi Hiroyasu、Soga Tomoyoshi、Sugano Sumio、Kohno Takashi、Suzuki Yutaka、Tsuchihara Katsuya
    • Journal Title

      Scientific Reports

      Volume: 9 Pages: 19529-19529

    • DOI

      10.1038/s41598-019-55692-9

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cells with broken left-right symmetry : roles of intrinsic cell chirality in left-right asymmetric epithelial morphogenesis.2019

    • Author(s)
      Utsunomiya, S., Sakamura, S., Sasamura, T., Ishibashi, T., Maeda, C., Inaki, M., and Matsuno K.
    • Journal Title

      Symmetry

      Volume: 11 (4) Pages: 505-505

    • DOI

      10.3390/sym11040505

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Graph splitting : A graph-based approach for superfamily-scale phylogenetic tree reconstruction.2019

    • Author(s)
      Motomu Matsui and Wataru Iwasaki.
    • Journal Title

      Systematic Biology

      Volume: 69 Pages: 265-279

    • DOI

      10.1093/sysbio/syz049

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Helicobacter pylori Virulence Factors Exploiting Gastric Colonization and its Pathogenicity.2019

    • Author(s)
      Ansari S, Yamaoka Y.
    • Journal Title

      Toxins (Basel)

      Volume: 11

    • DOI

      10.3390/toxins11110677

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genotypic diversity of Streptococcus suis and the S. suis-like bacterium Streptococcus ruminantium in ruminants.2019

    • Author(s)
      Okura M, Maruyama F, Ota A, Tanaka T, Matoba Y, Osawa A, Sadaat SM, Osaki M, Toyoda A, Ogura Y, Hayashi T, Takamatsu D.
    • Journal Title

      Vet Res.

      Volume: 50 Pages: 94-94

    • DOI

      10.1186/s13567-019-0708-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] SEARCH FOR SIGNATURES OF HUMAN GENETIC ADAPTATIONS IN EAST ASIA2019

    • Author(s)
      木村亮介
    • Journal Title

      Japanese Journal of Physiological Anthropology

      Volume: 24 Issue: 2 Pages: 87-91

    • DOI

      10.20718/jjpa.24.2_87

    • NAID

      130007677029

    • ISSN
      1342-3215, 2432-0986
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phylogeographic characteristics of hypervariable regions in the mitochondrial genome of a cosmopolitan, bloom-forming raphidophyte, Heterosigma akashiwo2019

    • Author(s)
      Ueki, S
    • Journal Title

      Journal of Phycology

      Volume: 55 Issue: 4 Pages: 858-867

    • DOI

      10.1111/jpy.12868

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut.2019

    • Author(s)
      Suzuki Y, Nishijima S, Furuta Y, Yoshimura J, Suda W, Oshima K, Hattori M, Morishita S.
    • Journal Title

      Microbiome.

      Volume: 7 Issue: 1 Pages: 119-119

    • DOI

      10.1186/s40168-019-0737-z

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Recompleting the Caenorhabditis elegans genome.2019

    • Author(s)
      Yoshimura J, Ichikawa K, Shoura MJ, Artiles KL, Gabdank I, Wahba L, Smith CL, Edgley ML, Rougvie AE, Fire AZ, Morishita S, Schwarz EM.
    • Journal Title

      Genome Res.

      Volume: 29 Issue: 6

    • DOI

      10.1101/gr.244830.118

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Interspecies Comparative Analyses Reveal Distinct Carbohydrate-Responsive Systems among Drosophila Species.2019

    • Author(s)
      Kaori Watanabe, YasutetsuKanaoka, Shoko Mizutani, Hironobu Uchiyama, ShunsukeYajima, Masayoshi Watada, Tadashi Uemura, and Yukako Hattori
    • Journal Title

      Cell Reports

      Volume: 28(10) Issue: 10 Pages: 2594-2607

    • DOI

      10.1016/j.celrep.2019.08.030

    • NAID

      120006716587

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evidence for sympatric speciation in a Wallacean ancient lake2019

    • Author(s)
      Nobu Sutra, Junko Kusumi, Javier Montenegro, Hirozumi Kobayashi, Shingo Fujimoto, Kawilarang W. A. Masengi, Atsushi J. Nagano, Atsushi Toyoda, Masatoshi Matsunami, Ryosuke Kimura, Kazunori Yamahira
    • Journal Title

      Evolution

      Volume: 73 Issue: 9 Pages: 1898-1915

    • DOI

      10.1111/evo.13821

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing2019

    • Author(s)
      T. Kazama, M. Okuno, Y. Watari, S. Yanase, C. Koizuka, Y. Tsuruta, H. Sugaya, A. Toyoda, T. Itoh, N. Tsutsumi, K. Toriyama, N. Koizuka, S. Arimura
    • Journal Title

      Nature Plants

      Volume: 5 Pages: 722-730

    • DOI

      10.1038/s41477-019-0459-z

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A key metabolic gene for recurrent freshwater colonization and radiation in fishes.2019

    • Author(s)
      Asano Ishikawa, Naoki Kabeya, Koki Ikeya, Ryo Kakioka, Jennifer N. Cech, Naoki Osada, Miguel C. Leal, Jun Inoue, Manabu Kume, Atsushi Toyoda, Ayumi Tezuka, Atsushi J. Nagano, Yo Y. Yamasaki, Yuto Suzuki, Tomoyuki Kokita, Hiroshi Takahashi, Kay Lucek, David Marques, Yusuke Takehana, Kiyoshi Naruse, Catherine L. Peichel, Ole Seehausen, Goro Yoshizaki, Jun Kitano, et al.
    • Journal Title

      Science

      Volume: 364 Issue: 6443 Pages: 886-889

    • DOI

      10.1126/science.aau5656

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Toward repositioning Allium vegetable crops as global commodities : opportunities and challenges for future application of omics and phytomedomics platforms to crop improvement.2019

    • Author(s)
      M. Shigyo, S. Fujito, S. Sato
    • Journal Title

      Acta Hortic

      Volume: 1251 Pages: 1-7

    • DOI

      10.17660/actahortic.2019.1251.1

    • Related Report
      2019 Annual Research Report
  • [Journal Article] ゲノム研究関連指針改正に関するアンケート結果報告-指針改正に現場の声を届けるために-2019

    • Author(s)
      山﨑千里, 大橋範子, 小門穂, 加藤和人
    • Journal Title

      医療・生命と倫理・社会

      Issue: 15 Pages: 23-33

    • NAID

      120006729506

    • Related Report
      2019 Annual Research Report
    • Open Access
  • [Journal Article] Effective therapeutic regimens in two South Asian countries with high resistance to major Helicobacter pylori antibiotics.2019

    • Author(s)
      Miftahussurur M, Aftab H, Shrestha PK, Sharma RP, Subsomwong P, Waskito LA, Doohan D, Fauzia KA, Yamaoka Y.
    • Journal Title

      Antimicrob Resist Infect Control.

      Volume: 8 Pages: 40-40

    • DOI

      10.1186/s13756-019-0482-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] SonicParanoid : fast, accurate and easy orthology inference.2019

    • Author(s)
      Salvatore Cosentino and Wataru Iwasaki.
    • Journal Title

      Bioinformatics

      Volume: 35 Pages: 149-151

    • DOI

      10.1093/bioinformatics/bty631

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic control of early dendritic cell lineage specification by the transcription factor IRF8 in mice2019

    • Author(s)
      Kurotaki D, Kawase W, Sasaki H, Nakabayashi J, Nishiyama A, Morse HC Ⅲ, Ozato K, Suzuki Y, Tamura T
    • Journal Title

      Blood

      Volume: 133 Pages: 1803-1813

    • DOI

      10.1182/blood-2018-06-857789

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] reactIDR : Evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction2019

    • Author(s)
      Risa Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
    • Journal Title

      BMC Bioinformatics

      Volume: 20 Issue: 3 Pages: 130-130

    • DOI

      10.1186/s12859-019-2645-4

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Whole-exome sequencing in a Japanese pedigree implicates a rare non-synonymous single-nucleotide variant in BEST3 as a candidate for mandibular prognathism.2019

    • Author(s)
      Kajii TS, Oka A, Saito F, Mitsui J, Iida J.
    • Journal Title

      Bone

      Volume: 122 Pages: 193-198

    • DOI

      10.1016/j.bone.2019.03.004

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Disruption of Endolysosomal RAB5/7 Efficiently Eliminates Colorectal Cancer Stem Cells.2019

    • Author(s)
      Takeda, M., Koseki, J., Takahashi, H., Miyoshi, N., Nishida, N., Nishimura, J., Hata, T., Matsuda, C., Mizushima, T., Yamamoto, H., Ishii, H., Doki, Y., Mori, M., Haraguchi, N.
    • Journal Title

      Cancer Res.

      Volume: 79 Pages: 1426-1437

    • DOI

      10.1158/0008-5472.can-18-2192

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mitochondrial pyruvate carrier I expression controls cancer EMT and radioresistance.2019

    • Author(s)
      Takaoka, Y., Konno, M., Koseki, J., Colvin, H., Asai, A., Tamari, K., Satoh, T., Mori, M., Doki, Y., Ogawa, K., Ishii, H.
    • Journal Title

      Cancer Sci.

      Volume: 110 Issue: 4 Pages: 1331-1339

    • DOI

      10.1111/cas.13980

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular and Cellular Network Systems Underlying Cold Tolerance of Caenorhabditis elegans2019

    • Author(s)
      Kohei OHNISHI, Natsune TAKAGAKI, Misaki OKAHATA, Mayu FUJITA, Akane OHTA, Atsushi KUHARA
    • Journal Title

      Cryobiology and Cryotechnology

      Volume: 64, 2 Issue: 2 Pages: 53-59

    • DOI

      10.20585/cryobolcryotechnol.64.2_53

    • NAID

      130007590027

    • ISSN
      1340-7902, 2424-1555
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic chromatin organization without the 30-nm fiber.2019

    • Author(s)
      Maeshima, K., Ide, S., Babokhov, M.
    • Journal Title

      Current Opinion in Cell Biology

      Volume: 58 Pages: 95-104

    • DOI

      10.1016/j.ceb.2019.02.003

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation and application of RNA-Seq by MinION.2019

    • Author(s)
      Seki M, Katsumata E, Suzuki A, Sereewattanawoot S, Sakamoto Y, Mizushima-Sugano J, Sugano S, Kohno T, Frith MC, Tsuchihara K, Suzuki Y.
    • Journal Title

      DNA Res

      Volume: 26 Pages: 55-65

    • DOI

      10.1093/dnares/dsy038

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mdm2-p53-SF1 pathway in ovarian granulosa cells directs ovulation and fertilization by conditining oocyte quality.2019

    • Author(s)
      Haraguchi H, Hirota Y, Saito-Fujita T, Tanaka T, Shimizu-Hirota R, Harada M, Akaeda S, Hiraoka T, Matsuo M, Matsumoto L, Hirata T, Koga K, Wada-Hiraike O, Fujii T, Osuga Y.
    • Journal Title

      FASEB J

      Volume: 33 Pages: 2610-2620

    • DOI

      10.1096/fj.201801401r

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] PDH-mediated metabolic flow is critical for skeletal muscle stem cell differentiation and myotube formation during regeneration in mice.2019

    • Author(s)
      Hori S, Hiramuki Y, Nishimura D, Sato F, Sehara-Fujisawa A.
    • Journal Title

      FASEB J

      Volume: - Pages: 8094-8109

    • DOI

      10.1096/fj.201802479r

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria2019

    • Author(s)
      Yu ZHENG, Ayana Saitou, Chiung-Mei Wang, Atsushi Toyoda, Yohei Minakuchi, Yuji Sekiguchi, Kenji Ueda, Hideaki Takano, Yasuteru Sakai, Keietsu Abe, Akira Yokota and Shuhei Yabe
    • Journal Title

      Frontiers in Microbiology

      Volume: 10 Pages: 893-893

    • DOI

      10.3389/fmicb.2019.00893

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular Basis of White Adipose Tissue Remodeling That Precedes and Coincides With Hibernation in the Syrian Hamster, a Food-Storing Hibernator.2019

    • Author(s)
      Chayama Y, Ando L, Sato Y, Shigenobu S, Anegawa D, Fujimoto T, Taii H, Tamura Y, Miura M, Yamaguchi Y.
    • Journal Title

      Frontiers in Physiology

      Volume: 9 Pages: 1973-1973

    • DOI

      10.3389/fphys.2018.01973

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reactive Oxygen Species (ROS) Generation Is Indispensable for Haustorium Formation of the Root Parasitic Plant Striga Hermonthica2019

    • Author(s)
      Wada, S., Cui, S. and Yoshida, S.
    • Journal Title

      Frontiers Plant Sci.

      Volume: 10 Pages: 1-12

    • DOI

      10.3389/fpls.2019.00328

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] DOT1L inhibition blocks multiple myeloma cell proliferation by suppressing IRF4-MYC signaling2019

    • Author(s)
      Ishiguro K., Kitajima H., Niinuma T., Ishida T., Maruyama R., Ikeda H., Hayashi T., Sasaki H., Wakasugi H., Nishiyama K., Shindo T., Yamamoto E., Kai M., Sasaki Y., Tokino T., Nakase H., Suzuki H.
    • Journal Title

      Haematologica

      Volume: 104 Pages: 155-165

    • DOI

      10.3324/haematol.2018.191262

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Alternative eradication regimens for Helicobacter pylori infection in Indonesian regions with high metronidazole and levofloxacin resistance.2019

    • Author(s)
      Miftahussurur M, Waskito LA, Syam AF, Nusi IA, Siregar G, Richardo M, Bakry AF, Rezkitha YAA, Wibawa IDN, Yamaoka Y.
    • Journal Title

      Infect Drug Resist.

      Volume: Volume 12 Pages: 345-358

    • DOI

      10.2147/idr.s187063

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Goldfish : An old and new model system to study vertebrate development, evolution, and human disease.2019

    • Author(s)
      Omori Y, Kon T
    • Journal Title

      J Biochem

      Volume: 165 Pages: 209-218

    • DOI

      10.1093/jb/mvy076

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A subset of diffuse-type gastric cancer is susceptible to mTOR inhibitors and checkpoint inhibitors2019

    • Author(s)
      Fukamachi H., Kim S., K., Koh J., Lee H. S., Sasaki Y., Yamashita K., Nishikawaji T., Shimada S., Akiyama Y., Byeon S. J., Bae D. H., Okuno K., Nakagawa M., Tanioka T., Inokuchi M., Kawachi H., Tsuchiya K., Kojima K., Tokino T., Eishi Y., Kim Y. S., Kim W. H., Yuasa Y., Tanaka S.
    • Journal Title

      J Exp Clin Cancer Res

      Volume: 38 Pages: 127-127

    • DOI

      10.1186/s13046-019-1121-3

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Thioredoxin o-mediated reduction of mitochondrial alternative oxidase in the thermogenic skunk cabbage Symplocarpus renifolius.2019

    • Author(s)
      Umekawa Y, Ito K
    • Journal Title

      Journal of Biochemistry

      Volume: 165 Pages: 57-65

    • DOI

      10.1093/jb/mvy082

    • NAID

      40021789431

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II2019

    • Author(s)
      Nagashima, R., Hibino, K., Ashwin, S. S., Babokhov, M., Fujishiro, S., Imai, R., Nozaki, T., Tamura, S., Tani, T., Kimura, H., Shribak, M., Kanemaki, M. T., Sasai, M., Maeshima, K.
    • Journal Title

      Journal of Cell Biology

      Volume: 218 Issue: 5 Pages: 1511-1530

    • DOI

      10.1083/jcb.201811090

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Transcriptome-wide identification of A-to-I RNA editing sites using ICE-seq2019

    • Author(s)
      Shunpei Okada, Hiroki Ueda, Yuta Noda, Tsutomu Suzuki
    • Journal Title

      Methods

      Volume: 156 Pages: 66-78

    • DOI

      10.1016/j.ymeth.2018.12.007

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Malignant paraganglioma of the posterior mediastinum : A case report with genetic analysis2019

    • Author(s)
      Adachi Y., Mita H., Sasaki Y., Himori R., Onodera K., Nakamura M., Kikuchi T., Yamashita K., Yoshida Y., Ishii Y., Endo T.
    • Journal Title

      Mol Clin Oncol

      Volume: 10 Pages: 10-16

    • DOI

      10.3892/mco.2018.1758

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Functional divergence of a heterochromatin-binding protein during stickleback speciation.2019

    • Author(s)
      Yoshida K, Ishikawa A, Toyoda A, Shigenobu S, Fujiyama A, Kitano J.
    • Journal Title

      Mol Ecol.

      Volume: 28 Issue: 6 Pages: 1563-1578

    • DOI

      10.1111/mec.14841

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community.2019

    • Author(s)
      Hiraoka S, Okazaki Y, Anda M, Toyoda A, Nakano SI, Iwasaki W.
    • Journal Title

      Nat Commun.

      Volume: 10 Issue: 1 Pages: 159-159

    • DOI

      10.1038/s41467-018-08103-y

    • NAID

      120006879468

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism.2019

    • Author(s)
      Arimura Y, Tachiwana H, Takagi H, Hori T, Kimura H, Fukagawa T, Kurumizaka H.
    • Journal Title

      Nature Commun

      Volume: 10 Pages: 1-10

    • DOI

      10.1038/s41467-019-08314-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic and phenotypic landscape of the MHC region in the Japanese population2019

    • Author(s)
      Hirata J, Hosomichi K, Sakaue S, Kanai M, Nakaoka H, Ishigaki K, Suzuki K, Akiyama M, Kishikawa T, Ogawa K, Masuda T, Yamamoto K, Hirata M, Matsuda K, Momozawa Y, Inoue I, Kubo M, Kamatani Y, Okada Y.
    • Journal Title

      Nature Genetics

      Volume: 51 Pages: 470-480

    • DOI

      10.1038/s41588-018-0336-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation2019

    • Author(s)
      Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, 他25名
    • Journal Title

      Nature Medicine

      Volume: 25 Pages: 667-678

    • DOI

      10.1038/s41591-019-0405-7

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The Structural Integrity of Lignin Is Crucial for Resistance against Striga hermonthica Parasitism in Rice2019

    • Author(s)
      Mutuku, J.M., Cui, S., C., Hori, Takeda, Y., Tobimatsu, Y., Nakabayashi, R., Mori, T., Saito, K., Demura, T., Umezawa, T., Yoshida, S., Shirasu, K.
    • Journal Title

      Plant Physiol.

      Volume: 179 Pages: 1796-1809

    • DOI

      10.1104/pp.18.01133

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Alternative oxidase capacity of mitochondria in microsporophylls may function in cycad thermogenesis2019

    • Author(s)
      Yasuko Ito-Inaba, Mayuko Sato, Mitsuhiko P. Sato, Yuya Kurayama, Haruna Yamamoto, Mizuki Ohata, Yoshitoshi Ogura, Tetsuya Hayashi, Kiminori Toyooka, Takehito Inaba
    • Journal Title

      Plant Physiology

      Volume: 180 Pages: 743-756

    • DOI

      10.1104/pp.19.00150

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Possible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8.2019

    • Author(s)
      Mio Takeuchi, Haruka Ozaki, Satoshi Hiraoka, Yoichi Kamagata, Susumu Sakata, Hideyoshi Yoshioka, and Wataru Iwasaki.
    • Journal Title

      PlosONE

      Volume: 14

    • DOI

      10.1371/journal.pone.0213535

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular evidence for recent divergence of X- and Y-linked gene pairs in Spinacia oleracea L.2019

    • Author(s)
      Yosuke Okazaki, Satoshi Takahata, Hideki Hirakawa, Yutaka Suzuki, Yasuyuki Onodera,
    • Journal Title

      PLOS ONE

      Volume: 14 Pages: 0214949-0214949

    • DOI

      10.1371/journal.pone.0214949

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Five alternative Helicobacter pylori antibiotics to counter high levofloxacin and metronidazole resistance in the Dominican Republic.2019

    • Author(s)
      Miftahussurur M, Cruz M, Doohan D, Subsomwong P, Abreu JAJ, Hosking C, Waskito LA, Yamaoka Y.
    • Journal Title

      PLoS One.

      Volume: 14 Issue: 3

    • DOI

      10.1371/journal.pone.0213868

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ES-mediated chimera analysis revealed requirement of DDX6 for NANOS2 localization and function in mouse germ cells2019

    • Author(s)
      Shimada R, Kiso M, Saga Y
    • Journal Title

      Scientific Report

      Volume: 9 Pages: 515-515

    • DOI

      10.1038/s41598-018-36502-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Direct analysis of incorporation of an anticancer drug into DNA at single-molecule resolution.2019

    • Author(s)
      Oshiro, T., Komoto, Y., Konno, M., Koseki, J., Asai, A., Ishii, H., Taniguchi, M.
    • Journal Title

      Sci. Rep.

      Volume: 9 Pages: 3886-3886

    • DOI

      10.1038/s41598-019-40504-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cold acclimation via the KQT-2 potassium channel is modulated by oxygen in Caenorhabditis elegans2019

    • Author(s)
      Okahata M., Wei A. D., Ohta A., Kuhara A.
    • Journal Title

      Science Advances

      Volume: 5, 2 (eaav3631) Pages: 1-12

    • DOI

      10.1126/sciadv.aav3631

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Prepatterning of Papilio xuthus caterpillar camouflage is controlled by three homeobox genes : clawless, abdominal-A, and Abdominal-B2019

    • Author(s)
      H. Jin, T. Seki, J. Yamaguchi and H. Fujiwara
    • Journal Title

      Science Advances

      Volume: 5

    • DOI

      10.1126/sciadv.aav7569

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Local structural changes of the influenza A virus ribonucleoprotein complex by single mutations in the specific residues involved in efficient genome packaging.2019

    • Author(s)
      Takizawa N, Ogura Y, Fujita Y, Noda T, Shigematsu H, Hayashi T, Kurokawa K
    • Journal Title

      Virology.

      Volume: 531 Pages: 126-140

    • DOI

      10.1016/j.virol.2019.03.004

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Screening for long noncoding RNAs associated with oral squamous cell carcinoma reveals the potentially oncogenic actions of DLEU1.2019

    • Author(s)
      Nishiyama K, Maruyama R, Niinuma T, Kai M, Kitajima H, Toyota M, Hatanaka Y, Igarashi T, Kobayashi JI, Ogi K, Dehari H, Miyazaki A, Yorozu A, Yamamoto E, Idogawa M, Sasaki Y, Sugai T, Tokino T, Hiratsuka H, Suzuki H.
    • Journal Title

      Cell Death Dis

      Volume: 9 Pages: 826-826

    • DOI

      10.1038/s41419-018-0893-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 3D genomic architecture reveals that neocentromeres associate with heterochromatin regions.2019

    • Author(s)
      Nishimura, K., Komiya, M., Hori, T., Itoh, T, Fukagawa, T
    • Journal Title

      J. Cell Biol.

      Volume: 218 Pages: 134-149

    • DOI

      10.1083/jcb.201805003

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Multi-step genomic dissection of a suspected intra-hospital Helicobacter cinaedi outbreak2019

    • Author(s)
      Yasuhiro Gotoh, Takako Taniguchi, Dai Yoshimura, Keisuke Katsura Yuji Saeki, Yasutoshi Hirabara, Mayumi Fukuda, Ichiro Takajo, Junko Tomida, Yoshiaki Kawamura, Yoshitoshi Ogura, Takehiko Itoh, Naoaki Misawa, Akihiko Okayama6, and Tetsuya Hayashi
    • Journal Title

      Microbial Genomics

      Volume: 5 Issue: 12 Pages: 1-11

    • DOI

      10.1099/mgen.0.000236

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Poly(ethylene glycol)-poly(lysine) block copolymer-ubenimex conjugate targets aminopeptidase N and exerts an antitumor effect in hepatocellular carcinoma stem cells.2019

    • Author(s)
      Toshiyama, R., Konno, M., Eguchi, H., Takemoto, H., Noda, T., Asai, A., Koseki, J., Haraguchi, N., Ueda, Y. Matsushita, K., Asukai, K., Ohashi, T., Iwagami, Y., Yamada, D., Sakai, D., Asaoka, T., Kudo, T., Kawamoto, K., Gotoh, K., Kobayashi, S., Satoh, T., Doki, Y., Nishiyama, N., Mori, M.
    • Journal Title

      Oncogene

      Volume: 38 Issue: 2 Pages: 244-260

    • DOI

      10.1038/s41388-018-0406-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Semaphorin signaling via MICAL3 induces symmetric cell division to expand breast cancer stem-like cells.2019

    • Author(s)
      Tominaga, K., Ninato, H., Murayama, T., Sasahara, A., Nishimura, T., Kiyokawa, E., Kanauchi, H., Shimizu, S., Sato, A., Nishioka, K., Tsuji, E., Yano, M., Ogawa, T., Ishii, H., Mori, M., Akashi, K., Okamoto, K., Tanabe, M., Tada, K., Tojo, A., Gotoh, N.
    • Journal Title

      Proc. Natl. Acad. Sci. U. S. A.

      Volume: 116 Issue: 2 Pages: 625-630

    • DOI

      10.1073/pnas.1806851116

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Contributions of regulated transcription and mRNA decay to the dynamics of gene expression.2019

    • Author(s)
      Yamada T. and Akimitsu N.
    • Journal Title

      Wiley Interdiscip Rev RNA

      Volume: 10

    • DOI

      10.1002/wrna.1508

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Estimating energy parameters for RNA secondary structure predictions using both experimental and computational data2019

    • Author(s)
      Shimpei Nishida, Shun Sakuraba, Kiyoshi Asai, and Michiaki Hamada
    • Journal Title

      IEEE/ACM transactions on computational biology and bioinformatics

      Volume: - Pages: 1645-1655

    • DOI

      10.1109/tcbb.2018.2813388

    • Description
      in press
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CRISPR/Cas9-based heritable targeted mutagenesis in Thermobia domestica : A genetic tool in an apterygote development model of wing evolution2018

    • Author(s)
      Ohde, T., Takehana, Y., Shiotsuki, T. and Niimi T.
    • Journal Title

      Arthropod Structure and Development

      Volume: 47 Pages: 362-369

    • DOI

      10.1016/j.asd.2018.06.003

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The role of Zhx2 transcription factor in bipolar cell differentiation during mouse retinal development2018

    • Author(s)
      Kawamura Y, Yamanaka K, Poh B, Kuribayashi H. Koso H, Watanabe S
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 503 Issue: 4 Pages: 3023-3030

    • DOI

      10.1016/j.bbrc.2018.08.088

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unexpected role of the IMD pathway in Drosophila gut defense against Staphylococcus aureus2018

    • Author(s)
      Hori A, Kurata S, Kuraishi T
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 495 Pages: 395-400

    • DOI

      10.1016/j.bbrc.2017.11.004

    • NAID

      120006375092

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Combining probabilistic alignments with read pair information improves accuracy of split-alignments2018

    • Author(s)
      Anish M S Shrestha, Naruki Yoshikawa, Kiyoshi Asai
    • Journal Title

      Bioinformatics

      Volume: 34 Issue: 21 Pages: 3631-3637

    • DOI

      10.1093/bioinformatics/bty398

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer2018

    • Author(s)
      Bansho Masutani, Shinichi Morishita
    • Journal Title

      Bioinformatics

      Volume: 35 Pages: 584-592

    • DOI

      10.1093/bioinformatics/bty663

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Convolutional neural networks for classification of alignments of non-coding RNA sequences2018

    • Author(s)
      Aoki, G. Sakakibara, Y.
    • Journal Title

      Bioinformatics

      Volume: 34

    • DOI

      10.1093/bioinformatics/bty228

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Data analytic study of the homothermal maintenance mechanism of Skunk Cabbage : Capturing pre-equilibrium characteristics using extended poisson model2018

    • Author(s)
      Kawasaki S, Ito K
    • Journal Title

      BIOPHYSICS

      Volume: 15 Issue: 0 Pages: 235-250

    • DOI

      10.2142/biophysico.15.0_235

    • NAID

      130007506150

    • ISSN
      2189-4779
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of a neuronal population in the telencephalon essential for fear conditioning in zebrafish2018

    • Author(s)
      Lal, P., Tanabe, H., Suster, M. L., Ailani, D., Kotani, Y., Muto, A., Itoh, M., Iwasaki, M., Wada, H., Yaksi, E., and Kawakami, K.
    • Journal Title

      BMC Biology

      Volume: 16 Pages: 45-45

    • DOI

      10.1186/s12915-018-0502-y

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Common variant of BCAS3 is associated with gout risk in Japanese population : the first replication study after gout GWAS in Han Chinese.2018

    • Author(s)
      Sakiyama M, Matsuo H, Nakaoka H, Kawamura Y, Kawaguchi M, Higashino T, Nakayama A, Akashi A, Ueyama J, Kondo T, Wakai K, Sakurai Y, Yamamoto K, Ooyama H, Shinomiya N.
    • Journal Title

      BMC Med Genet

      Volume: 19 Issue: 1 Pages: 96-96

    • DOI

      10.1186/s12881-018-0583-z

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Homeolog expression quantification methods for allopolyploids2018

    • Author(s)
      Tony C Y Kuo Masaomi Hatakeyama Toshiaki Tameshige Kentaro K Shimizu Jun Sese
    • Journal Title

      Briefings in Bioinformatics

      Volume: bby121

    • DOI

      10.1093/bib/bby121

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A convolutional neural network uses microscopic images to differentiate between mouse andhuman cell lines and their radioresistant clones.2018

    • Author(s)
      Toratani, M., Konno, M., Asai, A., Koseki, J., Kawamoto, K., Tamari, K., Li, Z., Sakai, D., Kudo, T., Satoh, T., Sato, K., Motooka, D., Okuzaki, D., Doki, Y., Mori, M., Ogawa, K., Ishii, H.
    • Journal Title

      Cancer Res.

      Volume: 78 Pages: 6703-6707

    • DOI

      10.1158/0008-5472.can-18-0653

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Chara Genome : Secondary Complexity and Implications for Plant Terrestrialization.2018

    • Author(s)
      Nishiyama, T., Sakayama, H., de Vries, J., Buschmann, H., Saint-Marcoux, D., et al. (他55名)
    • Journal Title

      Cell

      Volume: 174 Issue: 2 Pages: 448-464

    • DOI

      10.1016/j.cell.2018.06.033

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Roles of Nmnatl in the survival of retinal progenitors through the regulation of pro-apoptotic gene expression via histone acetylation2018

    • Author(s)
      Kuribayashi, H, Baba, Y, Iwagawa, T, Arai, E, Murakami, A, *Watanabe, S.
    • Journal Title

      Cell Death and Diseases

      Volume: 9 Pages: 891-891

    • DOI

      10.1038/s41419-018-0907-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polyamine flux suppresses histone lysine demethylases and enhances ID1 expression in cancer stem cells.2018

    • Author(s)
      Tamari, K., Konno, M., Asai, A., Koseki., Jun., Hayashi, K., Kawamoto, K., Murai, N., Matsufuji, S., Isohashi, F., Satoh, T., Goto, N., Tanaka, S., Doki, Y., Mori, M., Ogawa, K., Ishii, H.
    • Journal Title

      Cell Death. Discovery

      Volume: 4 Issue: 104 Pages: 104-104

    • DOI

      10.1038/s41420-018-0117-7

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Clonal Expansion and Diversification of Cancer-Associated Mutations in Endometriosis and Normal Endometrium.2018

    • Author(s)
      Suda K, Nakaoka H, Yoshihara K, Ishiguro T, Tamura R, Mori Y, Yamawaki K, Adachi S, Takahashi T, Kase H, Tanaka K, Yamamoto T, Motoyama T, Inoue I, Enomoto T
    • Journal Title

      Cell Reports

      Volume: 24 Pages: 1777-1789

    • DOI

      10.1016/j.celrep.2018.07.037

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bacteroides Vulgatus and Bacteroides dorei Reduce Gut Microbial Lipopolysaccharide Production and Inhibit Atherosclerosis2018

    • Author(s)
      Naofumi Yoshida, Takuo Emoto, Tomoya Yamashita, Hikaru Watanabe, Tomohiro Hayashi, Tokiko Tabata, Namiko Hoshi, Naoya Hatano, Genki Ozawa, Naoto Sasaki, Taiji Mizoguchi, Hilman Zulkifli Amin, Yushi Hirota, Wataru Ogawa, Takuji Yamada, Ken-ichi Hirata
    • Journal Title

      Circulation

      Volume: 138 Pages: 2486-2498

    • DOI

      10.1161/circulationaha.118.033714

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gut microbiome and plasma microbiome-related metabolites in patients with decompensated and compensated heart failure2018

    • Author(s)
      Tomohiro Hayashi, Tomoya Yamashita, Hikaru Watanabe, Kenjiro Kami, Naofumi Yoshida, Tokiko Tabata, Takuo Emoto, Naoto Sasaki, Taiji Mizoguchi, Yasuhiro Irino, Ryuji Toh, Masakazu Shinohara, Yuko Okada, Wataru Ogawa, Takuji Yamada, Ken-ichi Hirata
    • Journal Title

      Circ J

      Volume: 83 Issue: 1 Pages: 182-192

    • DOI

      10.1253/circj.cj-18-0468

      10.1253/circj.CJ-18-0468

    • NAID

      130007550393

    • ISSN
      1346-9843, 1347-4820
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Alternative splicing of the Caenorhabditis elegans lev-11 tropomyosin gene is regulated in a tissue-specific manner2018

    • Author(s)
      Eichi Watabe, Shoichiro Ono and Hidehito Kuroyanagi.
    • Journal Title

      Cytoskeleton

      Volume: 75 Pages: 427-436

    • DOI

      10.1002/cm.21489

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Kmt2b conveys monovalent and bivalent H3K4me3 in spermatogonia stem cells at germline and embryonic promoters2018

    • Author(s)
      Tomizawa S, Kobayashi Y, Shirakawa T, Watanabe K, Mizoguchi K, Hoshi I, Nakajima K, Nakabayashi J, Singh S, Dahl A, Alexopoulou D, Seki M, Suzuki Y, Royo H, Peters6, A. H.F.M, Anastassiadis K, Stewart A.F. and Ohbo K
    • Journal Title

      Development

      Volume: 145 Issue: 23

    • DOI

      10.1242/dev.169102

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Induced cell fate transitions at multiple cell layers configure haustorium development in parasitic plants.2018

    • Author(s)
      Wakatake, T., Yoshida, S., Shirasu, K.
    • Journal Title

      Development

      Volume: 145

    • DOI

      10.1242/dev.164848

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ubiquitination-independent repression of PRC1 targets during neuronal fate restriction in the developing mouse neocortex2018

    • Author(s)
      Masafumi Tsuboi#, Yusuke Kishi, #* Wakana Kyozuka, Haruhiko Koseki, Yusuke Hirabayashi, and Yukiko Gotoh* (#Co-first author, *Corespondence)
    • Journal Title

      Developmental Cell

      Volume: 47 Pages: 758-772

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Anteroposterior Molecular Registries in Ectodermof the Echinus Rudiment2018

    • Author(s)
      Shinya Adachi, Iyo Niimi, Yui Sakai, Fuminori Sato, Takuya Minokawa, Makoto Urata, Atsuko Sehara-Fujisawa, Isao Kobayashi, and Masaaki Yamaguchi
    • Journal Title

      DEVELOPMENTAL DYNAMICS

      Volume: 247 Pages: 1297-1307

    • DOI

      10.1002/dvdy.24686

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcriptome profiling reveals infection strategy of an insect maculavirus2018

    • Author(s)
      Katsuma S, Kawamoto M, Shoji K, Aizawa T, Kiuchi T, Izumi N, Ogawa M, Mashiko T, Kawasaki H, Sugano S, Tomari Y, Suzuki Y, Iwanaga M.
    • Journal Title

      DNA Research

      Volume: 印刷中 Pages: 277-286

    • DOI

      10.1093/dnares/dsx056

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide characterization of DNA methylation, small RNA expression, and hitone H3 lysine nine di-methylation in Brassica rapa L.2018

    • Author(s)
      Takahashi S, Osabe K, Fukushima N, Takuno S, Miyaji N, Shimizu M, Takasaki-Yasuda T, Suzuki Y, Dennie ES, Seki M, Fujimoto R
    • Journal Title

      DNA Research

      Volume: 25 Pages: 511-520

    • DOI

      10.1093/dnares/dsy021

    • NAID

      120006552896

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Diminished nuclear RNA decay upon Salmonella infection upregulates antibacterial noncoding RNAs2018

    • Author(s)
      Imamura Katsutoshi、Takaya Akiko、Ishida Yo‐ichi、Fukuoka Yayoi、Taya Toshiki、Nakaki Ryo、Kakeda Miho、Imamachi Naoto、Sato Aiko、Yamada Toshimichi、Onoguchi‐Mizutani Rena、Akizuki Gen、Tanu Tanzina、Tao Kazuyuki、Miyao Sotaro、Suzuki Yutaka、Nagahama Masami、Yamamoto Tomoko、Jensen Torben Heick、Akimitsu Nobuyoshi
    • Journal Title

      EMBO J.

      Volume: 37

    • DOI

      10.15252/embj.201797723

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ADAR1-mediated RNA editing is required for thymic self-tolerance and inhibition of autoimmunity.2018

    • Author(s)
      Nakahama T, Kato Y, Kim JI, Vongpipatana T, Suzuki Y, Walkley CR, Kawahara Y.
    • Journal Title

      EMBO Reports

      Volume: 19

    • DOI

      10.15252/embr.201846303

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genomic Characterization of β-Glucuronidase?Positive Escherichia coli O157:H7 Producing Stx2a2018

    • Author(s)
      Ogura Y, Seto K, Morimoto Y, Nakamura K, Sato MP, Gotoh Y, Itoh T, Toyoda A, Ohnishi M, Hayashi T.
    • Journal Title

      Emerg Infect Dis.

      Volume: 24 Pages: 2219-2227

    • DOI

      10.3201/eid2412.180404

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Control of directionality of chromatin folding for the inter- and intra-domain contacts at the Tfap2c-Bmp7 locus.2018

    • Author(s)
      Taro Tsujimura, Osamu Takase, Masahiro Yoshikawa, Etsuko Sano, Matsuhiko Hayashi, Tsuyoshi Takato, Atsushi Toyoda, Hideyuki Okano, Keiichi Hishikawa
    • Journal Title

      Epigenetics & Chromatin

      Volume: 11 Pages: 51-51

    • DOI

      10.1186/s13072-018-0221-1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Current understanding and management of Helicobacter pylori infection : an updated appraisal.2018

    • Author(s)
      Ansari S, Yamaoka Y.
    • Journal Title

      F1000Res.

      Volume: 7

    • DOI

      10.12688/f1000research.14149.1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bolidophyceae, a Sister Picoplanktonic Group of Diatoms-A Review2018

    • Author(s)
      Kuwata Akira、Yamada Kazumasa、Ichinomiya Mutsuo、Yoshikawa Shinya、Tragin Margot、Vaulot Daniel、Lopes dos Santos Adriana
    • Journal Title

      Frontiers in Marine Science

      Volume: 5 Pages: 1-17

    • DOI

      10.3389/fmars.2018.00370

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Exogenous induction of thermogenesis in Arum concinnatum by salicylic acid2018

    • Author(s)
      Laina D, Oikonomou I, Koutroumpa K, Bariotakis M, Kotzabasis K, Ito K, Seymour RS, Pirintsos S
    • Journal Title

      Functional Plant Biology

      Volume: 45 Pages: 1195-1195

    • DOI

      10.1071/fp17247

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A statistical method for observing personal diploid methylomes and transcriptomes with single-molecule real-time sequencing2018

    • Author(s)
      Yuta Suzuki, Yunhao Wang, Kin Au, Shinichi Morishita
    • Journal Title

      Genes

      Volume: 9

    • DOI

      10.3390/genes9090460

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Novel MXD4-NUTM1 fusion transcript identified in primary ovarian undifferentiated small round cell sarcoma.2018

    • Author(s)
      Tamura R, Nakaoka H, Yoshihara K, Mori Y, Yachida N, Nishikawa N, Motoyama T, Okuda S, Inoue I, Enomoto T
    • Journal Title

      Genes Chromosomes Cancer

      Volume: 57 Pages: 557-563

    • DOI

      10.1002/gcc.22668

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Exploring the limits and causes of plastid genome expansion in volvocine green algae.2018

    • Author(s)
      Gaouda, H., Hamaji, T., Yamamoto, K., Kawai-Toyooka, H., Suzuki, M., Noguchi, H., Minakuchi, Y. Toyoda, A., Fujiyama, A., Nozaki, H. and Smith, D. R.
    • Journal Title

      Genome Biol. Evol.

      Volume: 10 Pages: 2248-2254

    • DOI

      10.1093/gbe/evy175

    • NAID

      120006531169

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Characterizing <i>Helicobacter pylori cagA</i> in Myanmar.2018

    • Author(s)
      Myint T, Miftahussurur M, Vilaichone RK, Ni N, Aye TT, Subsomwong P, Uchida T, Mahachai V, Yamaoka Y.
    • Journal Title

      Gut Liver

      Volume: 12 Issue: 1 Pages: 51-57

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Pathogenesis of Helicobacter pylori infection.2018

    • Author(s)
      Waskito LA, Salama NR, Yamaoka Y.
    • Journal Title

      Helicobacter.

      Volume: 23 Issue: Suppl 1

    • DOI

      10.1111/hel.12516

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Refining the clinical phenotype of Okur-Chung neurodevelopmental syndrome.2018

    • Author(s)
      Akahira-Azuma M, Tsurusaki Y, Enomoto Y, Mitsui J, Kurosawa K.
    • Journal Title

      Hum Genome Var.

      Volume: 5 Pages: 18011-18011

    • DOI

      10.1038/hgv.2018.11

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic populations and virulence factors of Helicobacter pylori.2018

    • Author(s)
      Kabamba ET, Tuan VP, Yamaoka Y.
    • Journal Title

      Infect Genet Evol.

      Volume: 60 Pages: 109-116

    • DOI

      10.1016/j.meegid.2018.02.022

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Diffuse Gastric Cancer : A Summary of Analogous Contributing Factors for Its Molecular Pathogenicity.2018

    • Author(s)
      Ansari S, Gantuya B, Tuan VP, Yamaoka Y.
    • Journal Title

      Int J Mol Sci.

      Volume: 19 Issue: 8

    • DOI

      10.3390/ijms19082424

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The role of integrating conjugative elements in Helicobacter pylori : a review.2018

    • Author(s)
      Waskito LA, Yih-Wu J, Yamaoka Y.
    • Journal Title

      J Biomed Sci.

      Volume: 25 Issue: 1 Pages: 86-86

    • DOI

      10.1186/s12929-018-0489-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] HIF2α in the uterine stroma permits embryo invasion and luminal epithelium detachment2018

    • Author(s)
      Matsumoto L, Hirota Y, Saito-Fujita T, Takeda N, Tanaka T, Hiraoka T, Akaeda S, Fujita H, Shimizu-Hirota R, Igaue S, Matsuo M, Haraguchi H, Saito-Kanatani M, Fujii T, Osuga Y.
    • Journal Title

      J Clin Invest

      Volume: 128 Pages: 3186-3197

    • DOI

      10.1172/jci98931

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Surface microstructures are associated with mutational intratumoral heterogeneity in colorectal tumors2018

    • Author(s)
      Harada T., Yamamoto E., Yamano H. O., Aoki H., Matsushita H. O., Yoshikawa K., Takagi R., Harada E., Tanaka Y., Yoshida Y., Eizuka M., Yorozu A., Sudo G., Kitajima H., Niinuma T., Kai M., Sasaki Y., Tokino T., Sugai T., Nakase H., Suzuki H.
    • Journal Title

      J Gastroenterol

      Volume: 53 Pages: 1241-1252

    • DOI

      10.1007/s00535-018-1481-z

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Response to Letter to the Editor Regarding "Genetic Analysis of Ring Finger Protein 213(RNF213)c. 14576G>A in Intracranial Atherosclerosis of the Anterior and Posterior Circulations".2018

    • Author(s)
      Miyawaki S, Shinya Y, Imai H, Hongo H, Ono H, Takenobu A, Nakatomi H, Teraoka A, Saito N.
    • Journal Title

      J Stroke Cerebrovasc Dis

      Volume: 27 Pages: 2894-2895

    • DOI

      10.1016/j.jstrokecerebrovasdis.2018.07.009

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High-quality overlapping paired-end reads for the detection of A-to-I editing on small RNA.2018

    • Author(s)
      Galipon J, Ishii R, Ishiguro S, Suzuki Y, Kondo S, Okada-Hatakeyama M, Tomita M, Ui-Tei K.
    • Journal Title

      Methods Mol. Biol.

      Volume: 1823 Pages: 167-183

    • DOI

      10.1007/978-1-4939-8624-8_13

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
  • [Journal Article] A Single Pheromone Receptor Gene Conserved across 400 My of Vertebrate Evolution.2018

    • Author(s)
      Suzuki H, Nishida H, Kondo H, Yoda R, Iwata T, Nakayama K, Enomoto T, Wu J, Moriya-Ito K, Miyazaki M, Wakabayashi Y, Kishida T, Okabe M, Suzuki Y, Ito T, Hirota J, Nikaido M
    • Journal Title

      Mol. Biol. Evol.

      Volume: 35 Issue: 12 Pages: 2928-2939

    • DOI

      10.1093/molbev/msy186

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Retained plsticity and substantial recovery of rod-mediated visual acuity at the visual cortex in blind adult mice with retinal dystrophy2018

    • Author(s)
      Nishiguchi KM, Fujita K, Tokashiki N, Komamura H, Takemoto-Kimura S, Okuno H, Bito H, Nakazawa T.
    • Journal Title

      Mol Ther

      Volume: 26 Pages: 2397-2406

    • DOI

      10.1016/j.ymthe.2018.07.012

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MitoFish and MiFish pipeline : a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding.2018

    • Author(s)
      Yukuto Sato, Masaki Miya, Tsukasa Fukunaga, Tetsuya Sado, and Wataru Iwasaki.
    • Journal Title

      Molecular Biology and Evolution

      Volume: 35 Pages: 1553-1555

    • DOI

      10.1093/molbev/msy074

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Functional domains of NEATI architectural lncRNA induce paraspeckle assembly through phase separation2018

    • Author(s)
      Tomohiro Yamazaki, Sylvie Souquere, Takeshi Chujo, Simon Kobelke, Yee Seng Chong, Archa H, Fox, Charles S, Bond, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose
    • Journal Title

      Molecular Cell

      Volume: 70 Pages: 1038-1053

    • DOI

      10.1016/j.molcel.2018.05.019

    • NAID

      120006648349

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Lanthanide-Dependent Regulation of Methylotrophy in Methylobacteriumaquaticum Strain 22A.2018

    • Author(s)
      Masuda S, Suzuki Y, Fujitani Y, Mitsui R, Nakagawa T, Shintani M, Tani A.
    • Journal Title

      mSphere

      Volume: 3 Issue: 1

    • DOI

      10.1128/msphere.00462-17

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pulmonary Regnase-1 orchestrates the interplay of epithelium and adaptive immune systems to protect against pneumonia.2018

    • Author(s)
      Nakatsuka, Y., Vandenbon, A., Mino, T., Yoshinaga, M., Uehata, T., Cui, X., Sato, A., Tsujimura, T., Suzuki, Y., Sato, A., Handa, T., Chin, K., Sawa, T., Hirai, T., Takeuchi, O.
    • Journal Title

      Mucosal Immunology

      Volume: AOP Pages: 1203-1218