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先進ゲノム解析研究推進プラットフォーム

Research Project

Project/Area Number 16H06279
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources

Allocation TypeSingle-year Grants
Research InstitutionNational Institute of Genetics
Principal Investigator(Support) 小原 雄治  国立遺伝学研究所, 先端ゲノミクス推進センター, 特任教授 (70135292)
Co-Investigator(Kenkyū-buntansha)(Support) 加藤 和人  大阪大学, 大学院医学系研究科, 教授 (10202011)
川嶋 実苗  国立研究開発法人科学技術振興機構, バイオサイエンスデータベースセンター, 研究員 (00396706)
豊田 敦  国立遺伝学研究所, 生命情報研究センター, 特任教授 (10267495)
鈴木 穣  東京大学, 大学院新領域創成科学研究科, 教授 (40323646)
三井 純  東京大学, 医学部附属病院, 特任准教授 (70579862)
林 哲也  九州大学, 大学院医学研究院, 教授 (10173014)
時野 隆至  札幌医科大学, 医学部, 教授 (40202197)
黒川 顕  国立遺伝学研究所, 生命情報研究センター, 教授 (20343246)
中村 保一  国立遺伝学研究所, 生命情報研究センター, 教授 (60370920)
野口 英樹  大学共同利用機関法人情報・システム研究機構(機構本部施設等), データサイエンス共同利用基盤施設, 特任教授 (50333349)
高木 利久  東京大学, 大学院理学系研究科, 教授 (30110836)
岩崎 渉  東京大学, 大学院理学系研究科, 准教授 (50545019)
森下 真一  東京大学, 大学院新領域創成科学研究科, 教授 (90292854)
浅井 潔  東京大学, 大学院新領域創成科学研究科, 教授 (30356357)
笠原 雅弘  東京大学, 大学院新領域創成科学研究科, 講師 (60376605)
伊藤 武彦  東京工業大学, 生命理工学院, 教授 (90501106)
山田 拓司  東京工業大学, 生命理工学院, 准教授 (10437262)
小椋 義俊  九州大学, 大学院医学研究院, 准教授 (40363585)
久原 哲  九州大学, 大学院農学研究院, 名誉教授 (00153320)
高橋 弘喜  千葉大学, 真菌医学研究センター, 准教授 (60548460)
瀬々 潤  国立研究開発法人産業技術総合研究所, 人工知能研究センター, 研究チーム長 (40361539)
榊原 康文  慶應義塾大学, 理工学部, 教授 (10287427)
Project Period (FY) 2016 – 2021
Project Status Granted (Fiscal Year 2018)
Budget Amount *help
¥7,698,340,000 (Direct Cost: ¥5,921,800,000、Indirect Cost: ¥1,776,540,000)
Fiscal Year 2018: ¥1,282,970,000 (Direct Cost: ¥986,900,000、Indirect Cost: ¥296,070,000)
Fiscal Year 2017: ¥1,282,970,000 (Direct Cost: ¥986,900,000、Indirect Cost: ¥296,070,000)
Fiscal Year 2016: ¥1,283,490,000 (Direct Cost: ¥987,300,000、Indirect Cost: ¥296,190,000)
Keywords次世代DNAシーケンサー / 新規ゲノム配列決定 / リシーケンシング / エピゲノム / RNA-Seq / 1細胞解析 / メタゲノム解析 / スーパーコンピューター / ゲノムアッセンブル / ゲノム多型 / メタゲノム / ゲノムアノテーション
Outline of Annual Research Achievements

①総括支援活動では、支援課題の公募について、審査委員(すべて領域外)を増員して二段階審査とし、経費上限設定などによりできるだけ多くの採択ができるように努めた結果、応募281件から136件を支援課題とし採択した(採択率48.4%)。支援課題は科研費生物系のほぼすべての領域に渡っており、支援の成果を含む論文として2018年度に104報が発表された(研究発表欄に記載)。この中には、大脳の神経幹細胞分化機構解明、テントウムシの斑紋形成機構解明、古人骨全ゲノム解析から東南アジアと日本列島における人類集団の起源の解明、正常子宮内膜でのがん関連遺伝子変異の同定、日本人集団のHLA遺伝子型の全容を解明など、広い分野でのレベルの高い成果が含まれている。
②大規模配列解析拠点ネットワーク支援活動においては、最先端技術を支援に提供するとともに、それらの整備や高度化を進めた。遺伝研拠点では染色体の配列完成を目指して、長鎖シーケンサー(PacBio Sequel、Nanopore)、長鎖DNA試料調製技術、HiC解析技術の最適化、東大柏拠点では、Nanoporeを用いた一連の要素技術開発、九大拠点では微生物ゲノムのNGS解析最適化、札幌医大拠点ではLiquid Biopsyによる低頻度変異検出技術開発、等を進めた。
③高度情報解析支援ネットワーク活動では、支援から浮かび上がった課題を解決するソフトウェアの開発を進め、それらの論文発表や実際の課題への適用を進めた。2018年度は、相同染色体を「分けて」アセンブル出力するPlatanus-alleeの論文化、高速オルソログ同定プログラムSonicParanoid、環境から微生物を、微生物から環境を予測するツールLEA、ゲノム変異の高精度なランキングソフトEAGLE、微生物ゲノムアノテーションパイプラインDFAST、ロングリード向けアラインメントツールminialignなどの開発・高度化が進んだ。これらの成果として22報の論文発表がなされた。

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

・研究支援代表の下、研究支援分担者22名、研究支援協力者27名、総勢50名の班員が全国18の大学・研究機関(部局数は27)から参加して、支援及びそのための技術高度化を進めることができた。国立遺伝学研究所を中核機関とする連携ネットワークを形成して、支援を進めた。
・支援課題公募については、透明性を確保するために審査委員会は領域外有識者のみとし、班員からの技術的・経費的な情報提供を参考に支援課題を決定した。具体的には、支援依頼者には支援技術6区分(新規ゲノム、変異解析、修飾解析、RNA解析、メタゲノム、超高感度解析)と解析対象6区分(ヒト、マウス、マウス以外動物、植物、微生物)の組み合わせから審査区分を選んで申請してもらい、各組合せに審査委員会を置き、支援が効果的である課題候補を選考した。全審査区分からの課題候補を審査委員会主査会議で全体調整をして、さらに班員による候補課題の内容聞取り情報を参考にして支援課題を決定した。支援希望内容は拡大する傾向にあるが、経費上限の設定などによりできるだけ多く支援するように努め、採択率を約50%近くに維持することができた。科研費のほほぼ全種目、生物系のほぼ全領域から課題採択できているが、同程度の評価の場合は若手・女性・少額科研費からの申請及び初めての申請を優先するなどの措置をとり、多様な課題を採択できた。支援成果を含む論文発表は2018年度は104報と順調に増えている。
・支援技術の高度化のための活動も大規模DNAシーケンシング支援、高度情報解析支援共に進めることができ、高度化の論文は22報発表された。
・拡大班会議を開催し、支援依頼者の若手共同研究者の旅費援助をするなどして、支援側と依頼者の交流を深めることができた。
・情報解析講習会を初級、中級2回開催し、また解析パイプラインを整備するなど、支援依頼者が自力で解析できるように技術移転を進めた。

Strategy for Future Research Activity

・最先端の技術をより多く提供するために、支援技術の高度化を進めることが重要である。ゲノム解析は技術進展のスピードが特に速く、2-3年で解析手法が様変わりするために、新たなDNAシーケンシング技術の導入・開発、目的に沿った情報解析技術の開発と整備が中心になる。
・支援課題の採択率は、現状は予算の制限から50%にとどまっており、より多い課題の支援が求められる。現状では、各支援課題の支援経費の上限を設けて、これを超す分は経費負担を求める形にすることで、ようやくこの採択率になっている。解析内容を精査する効果はあるが、一方でゲノム解析においては一定規模以上で支援しないと意味のある結果が出ないことも多く、若手をはじめ、経費面で敷居が高くなるケースもある。そのためにも技術高度化により、より効果的な解析技術の整備やコスト削減を図っていく必要がある。
・大量データ解析の支援要望はますます増加していることから、解析パイプラインの整備とともに、情報解析講習会の開催を継続拡充する必要がある。

Report

(5 results)
  • 2018 Annual Research Report   Interim Assessment Report ( PDF )   Interim Assessment (Comments) ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report

Research Products

(1094 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research Journal Article Presentation Book Remarks Patent(Industrial Property Rights) Funded Workshop

  • [Int'l Joint Research] Baylor College of Medicine/City University of New York/Fred Hutchinson Cancer Research Center(アメリカ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] European Molecular Biology Laboratory/German Cancer Research Center/Heinrich Heine University(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Universitas Airlangga/University of Indonesia/Merauke City General Hospital(インドネシア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of Trento/University of Turin/European Institute of Oncology(イタリア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of Oxford/University of Cambridge/John Innes Centre(英国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] コールドスプリングハーバー研究所/エネルギー省連合ゲノム研究所/ヴァンダービルト大学(アメリカ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] マックスプランク研究所/ミュンスター大学/オスナブリュック大学(ドイツ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] ケンブリッジ大学/オックスフォード大学(英国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] モナシュ大学/メルボルン大学(オーストラリア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] チュラーロンコーン大学/マヒドン大学(タイ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] USDepartment of Energy Joint Genome Institute/University of California at Berkley/National Cancer Institute(USA)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University of Calgary/University of Western Ontario(Canada)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Sam Ratulangi University(Indonesia)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Mahidol University(Thailand)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Radboud University(The Netherlands)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Effective therapeutic regimens in two South Asian countries with high resistance to major Helicobacter pylori antibiotics.2019

    • Author(s)
      Miftahussurur M, Aftab H, Shrestha PK, Sharma RP, Subsomwong P, Waskito LA, Doohan D, Fauzia KA, Yamaoka Y.
    • Journal Title

      Antimicrob Resist Infect Control.

      Volume: 8 Pages: 40-40

    • DOI

      10.1186/s13756-019-0482-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] FuncTree2 : an interaotive radial tree for functional hierarchies and omics data visualization2019

    • Author(s)
      Y Darzi, Y Yamate, T Yamada
    • Journal Title

      Bioinformatics

    • DOI

      10.1093/bioinformatics/btz245

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] SonicParanoid : fast, accurate and easy orthology inference.2019

    • Author(s)
      Salvatore Cosentino and Wataru Iwasaki.
    • Journal Title

      Bioinformatics

      Volume: 35 Pages: 149-151

    • DOI

      10.1093/bioinformatics/bty631

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic control of early dendritic cell lineage specification by the transcription factor IRF8 in mice2019

    • Author(s)
      Kurotaki D, Kawase W, Sasaki H, Nakabayashi J, Nishiyama A, Morse HC Ⅲ, Ozato K, Suzuki Y, Tamura T
    • Journal Title

      Blood

      Volume: 133 Pages: 1803-1813

    • DOI

      10.1182/blood-2018-06-857789

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] reactIDR : Evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction2019

    • Author(s)
      Risa Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
    • Journal Title

      BMC Bioinformatics

      Volume: 20 Issue: 3 Pages: 130-130

    • DOI

      10.1186/s12859-019-2645-4

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Whole-exome sequencing in a Japanese pedigree implicates a rare non-synonymous single-nucleotide variant in BEST3 as a candidate for mandibular prognathism.2019

    • Author(s)
      Kajii TS, Oka A, Saito F, Mitsui J, Iida J.
    • Journal Title

      Bone.

      Volume: 122 Pages: 193-198

    • DOI

      10.1016/j.bone.2019.03.004

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Disruption of Endolysosomal RAB5/7 Efficiently Eliminates Colorectal Cancer Stem Cells.2019

    • Author(s)
      Takeda, M., Koseki, J., Takahashi, H., Miyoshi, N., Nishida, N., Nishimura, J., Hata, T., Matsuda, C., Mizushima, T., Yamamoto, H., Ishii, H., Doki, Y., Mori, M., Haraguchi, N.
    • Journal Title

      Cancer Res.

      Volume: 79 Pages: 1426-1437

    • DOI

      10.1158/0008-5472.can-18-2192

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mitochondrial pyruvate carrier I expression controls cancer EMT and radioresistance.2019

    • Author(s)
      Takaoka, Y., Konno, M., Koseki, J., Colvin, H., Asai, A., Tamari, K., Satoh, T., Mori, M., Doki, Y., Ogawa, K., Ishii, H.
    • Journal Title

      Cancer Sci.

      Volume: 110 Issue: 4 Pages: 1331-1339

    • DOI

      10.1111/cas.13980

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular and Cellular Network Systems Underlying Cold Tolerance of Caenorhabditis elegans2019

    • Author(s)
      Kohei OHNISHI, Natsune TAKAGAKI, Misaki OKAHATA, Mayu FUJITA, Akane OHTA, Atsushi KUHARA
    • Journal Title

      Cryobiology and Cryotechnology

      Volume: 64, 2 Issue: 2 Pages: 53-59

    • DOI

      10.20585/cryobolcryotechnol.64.2_53

    • NAID

      130007590027

    • ISSN
      1340-7902, 2424-1555
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic chromatin organization without the 30-nm fiber.2019

    • Author(s)
      Maeshima, K., Ide, S., Babokhov, M.
    • Journal Title

      Current Opinion in Cell Biology

      Volume: 58 Pages: 95-104

    • DOI

      10.1016/j.ceb.2019.02.003

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation and application of RNA-Seq by MinION.2019

    • Author(s)
      Seki M, Katsumata E, Suzuki A, Sereewattanawoot S, Sakamoto Y, Mizushima-Sugano J, Sugano S, Kohno T, Frith MC, Tsuchihara K, Suzuki Y.
    • Journal Title

      DNA research

      Volume: 26 Pages: 55-65

    • DOI

      10.1093/dnares/dsy038

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mdm2-p53-SF1 pathway in ovarian granulosa cells directs ovulation and fertilization by conditining oocyte quality.2019

    • Author(s)
      Haraguchi H, Hirota Y, Saito-Fujita T, Tanaka T, Shimizu-Hirota R, Harada M, Akaeda S, Hiraoka T, Matsuo M, Matsumoto L, Hirata T, Koga K, Wada-Hiraike O, Fujii T, Osuga Y.
    • Journal Title

      FASEB J

      Volume: 33 Pages: 2610-2620

    • DOI

      10.1096/fj.201801401r

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] PDH-mediated metabolic flow is critical for skeletal muscle stem cell differentiation and myotube formation during regeneration in mice.2019

    • Author(s)
      Hori S, Hiramuki Y, Nishimura D, Sato F, Sehara-Fujisawa A.
    • Journal Title

      FASEB Journal

      Volume: in press

    • DOI

      10.1096/fj.201802479r

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria2019

    • Author(s)
      Yu ZHENG, Ayana Saitou, Chiung-Mei Wang, Atsushi Toyoda, Yohei Minakuchi, Yuji Sekiguchi, Kenji Ueda, Hideaki Takano, Yasuteru Sakai, Keietsu Abe, Akira Yokota and Shuhei Yabe
    • Journal Title

      Frontiers in Microbiology

      Volume: 10 Pages: 893-893

    • DOI

      10.3389/fmicb.2019.00893

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular Basis of White Adipose Tissue Remodeling That Precedes and Coincides With Hibernation in the Syrian Hamster, a Food-Storing Hibernator.2019

    • Author(s)
      Chayama Y, Ando L, Sato Y, Shigenobu S, Anegawa D, Fujimoto T, Taii H, Tamura Y, Miura M, Yamaguchi Y.
    • Journal Title

      Frontiers in Physiology

      Volume: 9 Pages: 1973-1973

    • DOI

      10.3389/fphys.2018.01973

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reactive Oxygen Species (ROS) Generation Is Indispensable for Haustorium Formation of the Root Parasitic Plant Striga Hermonthica2019

    • Author(s)
      Wada, S., Cui, S. and Yoshida, S.
    • Journal Title

      Frontiers Plant Science

      Volume: 10 Pages: 1-12

    • DOI

      10.3389/fpls.2019.00328

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] DOT1L inhibition blocks multiple myeloma cell proliferation by suppressing IRF4-MYC signaling2019

    • Author(s)
      Ishiguro K., Kitajima H., Niinuma T., Ishida T., Maruyama R., Ikeda H., Hayashi T., Sasaki H., Wakasugi H., Nishiyama K., Shindo T., Yamamoto E., Kai M., Sasaki Y., Tokino T., Nakase H., Suzuki H.
    • Journal Title

      Haematologica

      Volume: 104 Pages: 155-165

    • DOI

      10.3324/haematol.2018.191262

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Alternative eradication regimens for Helicobacter pylori infection in Indonesian regions with high metronidazole and levofloxacin resistance.2019

    • Author(s)
      Miftahussurur M, Waskito LA, Syam AF, Nusi IA, Siregar G, Richardo M, Bakry AF, Rezkitha YAA, Wibawa IDN, Yamaoka Y.
    • Journal Title

      Infect Drug Resist.

      Volume: Volume 12 Pages: 345-358

    • DOI

      10.2147/idr.s187063

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Goldfish : An old and new model system to study vertebrate development, evolution, and human disease.2019

    • Author(s)
      Omori Y, Kon T
    • Journal Title

      J Biochem

      Volume: 165 Pages: 209-218

    • DOI

      10.1093/jb/mvy076

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A subset of diffuse-type gastric cancer is susceptible to mTOR inhibitors and checkpoint inhibitors2019

    • Author(s)
      Fukamachi H., Kim S., K., Koh J., Lee H. S., Sasaki Y., Yamashita K., Nishikawaji T., Shimada S., Akiyama Y., Byeon S. J., Bae D. H., Okuno K., Nakagawa M., Tanioka T., Inokuchi M., Kawachi H., Tsuchiya K., Kojima K., Tokino T., Eishi Y., Kim Y. S., Kim W. H., Yuasa Y., Tanaka S.
    • Journal Title

      J Exp Clin Cancer Res

      Volume: 38 Pages: 127-127

    • DOI

      10.1186/s13046-019-1121-3

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Thioredoxin o-mediated reduction of mitochondrial alternative oxidase in the thermogenic skunk cabbage Symplocarpus renifolius.2019

    • Author(s)
      Umekawa Y, Ito K
    • Journal Title

      Journal of Biochemistry

      Volume: 165 Pages: 57-65

    • DOI

      10.1093/jb/mvy082

    • NAID

      40021789431

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase Ⅱ.2019

    • Author(s)
      Nagashima, R., Hibino, K., Ashwin, S. S., Babokhov, M., Fujishiro, S., Imai, R., Nozaki, T., Tamura, S., Tani, T., Kimura, H., Shribak, M., Kanemaki, M. T., Sasai, M., Maeshima, K.
    • Journal Title

      Journal of Cell Biology

      Volume: 218 Issue: 5 Pages: 1511-1530

    • DOI

      10.1083/jcb.201811090

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Phylogeographic characteristics of hypervariable regions in the mitochondrial genome of a cosmopolitan, bloom-forming raphidophyte, Heterosigma akashiwo2019

    • Author(s)
      Ueki, S
    • Journal Title

      Journal of Phycology

    • DOI

      10.1111/jpy.12868

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transcriptome-wide identification of A-to-I RNA editing sites using ICE-seq2019

    • Author(s)
      Shunpei Okada, Hiroki Ueda, Yuta Noda, Tsutomu Suzuki
    • Journal Title

      Methods

      Volume: 156 Pages: 66-78

    • DOI

      10.1016/j.ymeth.2018.12.007

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Malignant paraganglioma of the posterior mediastinum : A case report with genetic analysis2019

    • Author(s)
      Adachi Y., Mita H., Sasaki Y., Himori R., Onodera K., Nakamura M., Kikuchi T., Yamashita K., Yoshida Y., Ishii Y., Endo T.
    • Journal Title

      Mol Clin Oncol

      Volume: 10 Pages: 10-16

    • DOI

      10.3892/mco.2018.1758

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Functional divergence of a heterochromatin-binding protein during stickleback speciation.2019

    • Author(s)
      Yoshida K, Ishikawa A, Toyoda A, Shigenobu S, Fujiyama A, Kitano J.
    • Journal Title

      Mol Ecol.

      Volume: 28 Issue: 6 Pages: 1563-1578

    • DOI

      10.1111/mec.14841

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community.2019

    • Author(s)
      Hiraoka S, Okazaki Y, Anda M, Toyoda A, Nakano SI, Iwasaki W.
    • Journal Title

      Nat Commun.

      Volume: 10 Issue: 1 Pages: 159-159

    • DOI

      10.1038/s41467-018-08103-y

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism.2019

    • Author(s)
      Arimura Y, Tachiwana H, Takagi H, Hori T, Kimura H, Fukagawa T, Kurumizaka H.
    • Journal Title

      Nature Commun

      Volume: 10 Pages: 1-10

    • DOI

      10.1038/s41467-019-08314-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.2019

    • Author(s)
      Kajitani R, Yoshimura D, Okuno M, Minakuchi Y, Kagoshima H, Fujiyama A, Kubokawa K, Kohara Y, Toyoda A, Itoh T
    • Journal Title

      Nature Communications

      Volume: - Issue: 1 Pages: 1702-1702

    • DOI

      10.1038/s41467-019-09575-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic and phenotypic landscape of the MHC region in the Japanese population2019

    • Author(s)
      Hirata J, Hosomichi K, Sakaue S, Kanai M, Nakaoka H, Ishigaki K, Suzuki K, Akiyama M, Kishikawa T, Ogawa K, Masuda T, Yamamoto K, Hirata M, Matsuda K, Momozawa Y, Inoue I, Kubo M, Kamatani Y, Okada Y.
    • Journal Title

      Nature Genetics

      Volume: 51 Pages: 470-480

    • DOI

      10.1038/s41588-018-0336-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation2019

    • Author(s)
      Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, 他25名
    • Journal Title

      Nature medicine

      Volume: 25 Pages: 667-678

    • DOI

      10.1038/s41591-019-0405-7

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer2019

    • Author(s)
      Jakob Wirbel, Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese, Jonas S Fleck, Anita Y Voigt, Albert Palleja, Ruby Ponnudurai, Shinichi Sunagawa, Luis Pedro Coelho, Petra Schrotz-King, Emily Vogtmann, Nina Habermann, 他21名
    • Journal Title

      Nature medicine

      Volume: 25 Pages: 679-689

    • DOI

      10.1038/s41591-019-0406-6

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The Structural Integrity of Lignin Is Crucial for Resistance against Striga hermonthica Parasitism in Rice2019

    • Author(s)
      Mutuku, J.M., Cui, S., C., Hori, Takeda, Y., Tobimatsu, Y., Nakabayashi, R., Mori, T., Saito, K., Demura, T., Umezawa, T., Yoshida, S., Shirasu, K.
    • Journal Title

      Plant Physiol.

      Volume: 179 Pages: 1796-1809

    • DOI

      10.1104/pp.18.01133

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Alternative oxidase capacity of mitochondria in microsporophylls may function in cycad thermogenesis2019

    • Author(s)
      Yasuko Ito-Inaba, Mayuko Sato, Mitsuhiko P. Sato, Yuya Kurayama, Haruna Yamamoto, Mizuki Ohata, Yoshitoshi Ogura, Tetsuya Hayashi, Kiminori Toyooka, Takehito Inaba
    • Journal Title

      Plant Physiology

      Volume: 180

    • DOI

      10.1104/pp.19.00150

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Possible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8.2019

    • Author(s)
      Mio Takeuchi, Haruka Ozaki, Satoshi Hiraoka, Yoichi Kamagata, Susumu Sakata, Hideyoshi Yoshioka, and Wataru Iwasaki.
    • Journal Title

      PLOS ONE

      Volume: 14

    • DOI

      10.1371/journal.pone.0213535

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular evidence for recent divergence of X- and Y-linked gene pairs in Spinacia oleracea L.2019

    • Author(s)
      Yosuke Okazaki, Satoshi Takahata, Hideki Hirakawa, Yutaka Suzuki, Yasuyuki Onodera,
    • Journal Title

      PLOS ONE

      Volume: 14 Pages: 0214949-0214949

    • DOI

      10.1371/journal.pone.0214949

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Five alternative Helicobacter pylori antibiotics to counter high levofloxacin and metronidazole resistance in the Dominican Republic.2019

    • Author(s)
      Miftahussurur M, Cruz M, Doohan D, Subsomwong P, Abreu JAJ, Hosking C, Waskito LA, Yamaoka Y.
    • Journal Title

      PLoS One.

      Volume: 14 Issue: 3

    • DOI

      10.1371/journal.pone.0213868

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ES-mediated chimera analysis revealed requirement of DDX6 for NANOS2 localization and function in mouse germ cells2019

    • Author(s)
      Shimada R, Kiso M, Saga Y
    • Journal Title

      Sci Rep.

      Volume: 9 Pages: 515-515

    • DOI

      10.1038/s41598-018-36502-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Direct analysis of incorporation of an anticancer drug into DNA at single-molecule resolution.2019

    • Author(s)
      Oshiro, T., Komoto, Y., Konno, M., Koseki, J., Asai, A., Ishii, H., Taniguchi, M.
    • Journal Title

      Sci. Rep.

      Volume: 9 Pages: 3886-3886

    • DOI

      10.1038/s41598-019-40504-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cold acclimation via the KQT-2 potassium channel is modulated by oxygen in Caenorhabditis elegans2019

    • Author(s)
      Okahata M., Wei A. D., Ohta A., Kuhara A.
    • Journal Title

      Science Advances

      Volume: 5, 2 (eaav3631) Pages: 1-12

    • DOI

      10.1126/sciadv.aav3631

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Prepatterning of Papilio xuthus caterpillar camouflage is controlled by three homeobox genes : clawless, abdominal-A, and Abdominal-B2019

    • Author(s)
      H. Jin, T. Seki, J. Yamaguchi and H. Fujiwara
    • Journal Title

      Science Avances

      Volume: 5

    • DOI

      10.1126/sciadv.aav7569

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Local structural changes of the influenza A virus ribonucleoprotein complex by single mutations in the specific residues involved in efficient genome packaging.2019

    • Author(s)
      Takizawa N, Ogura Y, Fujita Y, Noda T, Shigematsu H, Hayashi T, Kurokawa K
    • Journal Title

      Virology

      Volume: 531 Pages: 126-140

    • DOI

      10.1016/j.virol.2019.03.004

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Screening for long noncoding RNAs associated with oral squamous cell carcinoma reveals the potentially oncogenic actions of DLEU1.2019

    • Author(s)
      Nishiyama K, Maruyama R, Niinuma T, Kai M, Kitajima H, Toyota M, Hatanaka Y, Igarashi T, Kobayashi JI, Ogi K, Dehari H, Miyazaki A, Yorozu A, Yamamoto E, Idogawa M, Sasaki Y, Sugai T, Tokino T, Hiratsuka H, Suzuki H.
    • Journal Title

      Cell Death Dis

      Volume: 9 Pages: 826-826

    • DOI

      10.1038/s41419-018-0893-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 3D genomic architecture reveals that neocentromeres associate with heterochromatin regions.2019

    • Author(s)
      Nishimura, K., Komiya, M., Hori, T., Itoh, T, Fukagawa, T
    • Journal Title

      J. Cell Biol.

      Volume: 218 Pages: 134-149

    • DOI

      10.1083/jcb.201805003

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Multi-step genomic dissection of a suspected intra-hospital Helicobacter cinaedi outbreak2019

    • Author(s)
      Yasuhiro Gotoh, Takako Taniguchi, Dai Yoshimura, Keisuke Katsura Yuji Saeki, Yasutoshi Hirabara, Mayumi Fukuda, Ichiro Takajo, Junko Tomida, Yoshiaki Kawamura, Yoshitoshi Ogura, Takehiko Itoh, Naoaki Misawa, Akihiko Okayama6, and Tetsuya Hayashi
    • Journal Title

      Microbial Genomics

      Volume: 5 Issue: 12 Pages: 1-11

    • DOI

      10.1099/mgen.0.000236

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Poly(ethylene glycol)-poly(lysine) block copolymer-ubenimex conjugate targets aminopeptidase N and exerts an antitumor effect in hepatocellular carcinoma stem cells.2019

    • Author(s)
      Toshiyama, R., Konno, M., Eguchi, H., Takemoto, H., Noda, T., Asai, A., Koseki, J., Haraguchi, N., Ueda, Y. Matsushita, K., Asukai, K., Ohashi, T., Iwagami, Y., Yamada, D., Sakai, D., Asaoka, T., Kudo, T., Kawamoto, K., Gotoh, K., Kobayashi, S., Satoh, T., Doki, Y., Nishiyama, N., Mori, M.
    • Journal Title

      Oncogene

      Volume: 38 Issue: 2 Pages: 244-260

    • DOI

      10.1038/s41388-018-0406-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Semaphorin signaling via MICAL3 induces symmetric cell division to expand breast cancer stem-like cells.2019

    • Author(s)
      Tominaga, K., Ninato, H., Murayama, T., Sasahara, A., Nishimura, T., Kiyokawa, E., Kanauchi, H., Shimizu, S., Sato, A., Nishioka, K., Tsuji, E., Yano, M., Ogawa, T., Ishii, H., Mori, M., Akashi, K., Okamoto, K., Tanabe, M., Tada, K., Tojo, A., Gotoh, N.
    • Journal Title

      Proc. Natl. Acad. Sci. U. S. A.

      Volume: 116 Issue: 2 Pages: 625-630

    • DOI

      10.1073/pnas.1806851116

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Contributions of regulated transcription and mRNA decay to the dynamics of gene expression.2019

    • Author(s)
      Yamada T. and Akimitsu N.
    • Journal Title

      Wiley Interdiscip Rev RNA

      Volume: 10

    • DOI

      10.1002/wrna.1508

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CRISPR/Cas9-based heritable targeted mutagenesis in Thermobia domestica : A genetic tool in an apterygote development model of wing evolution2018

    • Author(s)
      Ohde, T., Takehana, Y., Shiotsuki, T. and Niimi T.
    • Journal Title

      Arthropod Structure and Development

      Volume: 47 Pages: 362-369

    • DOI

      10.1016/j.asd.2018.06.003

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The role of Zhx2 transcription factor in bipolar cell differentiation during mouse retinal development2018

    • Author(s)
      Kawamura Y, Yamanaka K, Poh B, Kuribayashi H. Koso H, Watanabe S
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 503 Issue: 4 Pages: 3023-3030

    • DOI

      10.1016/j.bbrc.2018.08.088

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unexpected role of the IMD pathway in Drosophila gut defense against Staphylococcus aureus2018

    • Author(s)
      Hori A, Kurata S, Kuraishi T
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 495 Pages: 395-400

    • DOI

      10.1016/j.bbrc.2017.11.004

    • NAID

      120006375092

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Combining probabilistic alignments with read pair information improves accuracy of split-alignments2018

    • Author(s)
      Anish M S Shrestha, Naruki Yoshikawa, Kiyoshi Asai
    • Journal Title

      Bioinformatics

      Volume: 34 Issue: 21 Pages: 3631-3637

    • DOI

      10.1093/bioinformatics/bty398

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer2018

    • Author(s)
      Bansho Masutani, Shinichi Morishita
    • Journal Title

      Bioinformatics

      Volume: 35 Pages: 584-592

    • DOI

      10.1093/bioinformatics/bty663

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Convolutional neural networks for classification of alignments of non-coding RNA sequences2018

    • Author(s)
      Aoki, G. Sakakibara, Y.
    • Journal Title

      Bioinformatics

      Volume: 34

    • DOI

      10.1093/bioinformatics/bty228

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Data analytic study of the homothermal maintenance mechanism of Skunk Cabbage : Capturing pre-equilibrium characteristics using extended poisson model2018

    • Author(s)
      Kawasaki S, Ito K
    • Journal Title

      BIOPHYSICS

      Volume: 15 Issue: 0 Pages: 235-250

    • DOI

      10.2142/biophysico.15.0_235

    • NAID

      130007506150

    • ISSN
      2189-4779
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of a neuronal population in the telencephalon essential for fear conditioning in zebrafish2018

    • Author(s)
      Lal, P., Tanabe, H., Suster, M. L., Ailani, D., Kotani, Y., Muto, A., Itoh, M., Iwasaki, M., Wada, H., Yaksi, E., and Kawakami, K.
    • Journal Title

      BMC Biology

      Volume: 16 Pages: 45-45

    • DOI

      10.1186/s12915-018-0502-y

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Common variant of BCAS3 is associated with gout risk in Japanese population : the first replication study after gout GWAS in Han Chinese.2018

    • Author(s)
      Sakiyama M, Matsuo H, Nakaoka H, Kawamura Y, Kawaguchi M, Higashino T, Nakayama A, Akashi A, Ueyama J, Kondo T, Wakai K, Sakurai Y, Yamamoto K, Ooyama H, Shinomiya N.
    • Journal Title

      BMC Med Genet

      Volume: 19 Issue: 1 Pages: 96-96

    • DOI

      10.1186/s12881-018-0583-z

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Homeolog expression quantification methods for allopolyploids2018

    • Author(s)
      Tony C Y Kuo Masaomi Hatakeyama Toshiaki Tameshige Kentaro K Shimizu Jun Sese
    • Journal Title

      Briefings in Bioinformatics

      Volume: bby121

    • DOI

      10.1093/bib/bby121

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A convolutional neural network uses microscopic images to differentiate between mouse andhuman cell lines and their radioresistant clones.2018

    • Author(s)
      Toratani, M., Konno, M., Asai, A., Koseki, J., Kawamoto, K., Tamari, K., Li, Z., Sakai, D., Kudo, T., Satoh, T., Sato, K., Motooka, D., Okuzaki, D., Doki, Y., Mori, M., Ogawa, K., Ishii, H.
    • Journal Title

      Cancer Res.

      Volume: 78 Pages: 6703-6707

    • DOI

      10.1158/0008-5472.can-18-0653

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Chara Genome : Secondary Complexity and Implications for Plant Terrestrialization.2018

    • Author(s)
      Nishiyama, T., Sakayama, H., de Vries, J., Buschmann, H., Saint-Marcoux, D., et al. (他55名)
    • Journal Title

      Cell

      Volume: 174 Issue: 2 Pages: 448-464

    • DOI

      10.1016/j.cell.2018.06.033

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Roles of Nmnatl in the survival of retinal progenitors through the regulation of pro-apoptotic gene expression via histone acetylation2018

    • Author(s)
      Kuribayashi, H, Baba, Y, Iwagawa, T, Arai, E, Murakami, A, *Watanabe, S.
    • Journal Title

      Cell Death and Diseases

      Volume: 9 Pages: 891-891

    • DOI

      10.1038/s41419-018-0907-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polyamine flux suppresses histone lysine demethylases and enhances ID1 expression in cancer stem cells.2018

    • Author(s)
      Tamari, K., Konno, M., Asai, A., Koseki., Jun., Hayashi, K., Kawamoto, K., Murai, N., Matsufuji, S., Isohashi, F., Satoh, T., Goto, N., Tanaka, S., Doki, Y., Mori, M., Ogawa, K., Ishii, H.
    • Journal Title

      Cell Death. Discovery

      Volume: 4 Issue: 104 Pages: 104-104

    • DOI

      10.1038/s41420-018-0117-7

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Clonal Expansion and Diversification of Cancer-Associated Mutations in Endometriosis and Normal Endometrium.2018

    • Author(s)
      Suda K, Nakaoka H, Yoshihara K, Ishiguro T, Tamura R, Mori Y, Yamawaki K, Adachi S, Takahashi T, Kase H, Tanaka K, Yamamoto T, Motoyama T, Inoue I, Enomoto T
    • Journal Title

      Cell Reports

      Volume: 24 Pages: 1777-1789

    • DOI

      10.1016/j.celrep.2018.07.037

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bacteroides Vulgatus and Bacteroides dorei Reduce Gut Microbial Lipopolysaccharide Production and Inhibit Atherosclerosis2018

    • Author(s)
      Naofumi Yoshida, Takuo Emoto, Tomoya Yamashita, Hikaru Watanabe, Tomohiro Hayashi, Tokiko Tabata, Namiko Hoshi, Naoya Hatano, Genki Ozawa, Naoto Sasaki, Taiji Mizoguchi, Hilman Zulkifli Amin, Yushi Hirota, Wataru Ogawa, Takuji Yamada, Ken-ichi Hirata
    • Journal Title

      Circulation

      Volume: 138 Pages: 2486-2498

    • DOI

      10.1161/circulationaha.118.033714

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gut microbiome and plasma microbiome-related metabolites in patients with decompensated and compensated heart failure2018

    • Author(s)
      Tomohiro Hayashi, Tomoya Yamashita, Hikaru Watanabe, Kenjiro Kami, Naofumi Yoshida, Tokiko Tabata, Takuo Emoto, Naoto Sasaki, Taiji Mizoguchi, Yasuhiro Irino, Ryuji Toh, Masakazu Shinohara, Yuko Okada, Wataru Ogawa, Takuji Yamada, Ken-ichi Hirata
    • Journal Title

      Circ J

      Volume: 83 Issue: 1 Pages: 182-192

    • DOI

      10.1253/circj.cj-18-0468

      10.1253/circj.CJ-18-0468

    • NAID

      130007550393

    • ISSN
      1346-9843, 1347-4820
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Alternative splicing of the Caenorhabditis elegans lev-11 tropomyosin gene is regulated in a tissue-specific manner2018

    • Author(s)
      Eichi Watabe, Shoichiro Ono and Hidehito Kuroyanagi.
    • Journal Title

      Cytoskeleton

      Volume: 75 Pages: 427-436

    • DOI

      10.1002/cm.21489

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Kmt2b conveys monovalent and bivalent H3K4me3 in spermatogonia stem cells at germline and embryonic promoters2018

    • Author(s)
      Tomizawa S, Kobayashi Y, Shirakawa T, Watanabe K, Mizoguchi K, Hoshi I, Nakajima K, Nakabayashi J, Singh S, Dahl A, Alexopoulou D, Seki M, Suzuki Y, Royo H, Peters6, A. H.F.M, Anastassiadis K, Stewart A.F. and Ohbo K
    • Journal Title

      Development

      Volume: 145 Issue: 23

    • DOI

      10.1242/dev.169102

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Induced cell fate transitions at multiple cell layers configure haustorium development in parasitic plants.2018

    • Author(s)
      Wakatake, T., Yoshida, S., Shirasu, K.
    • Journal Title

      Development

      Volume: 145

    • DOI

      10.1242/dev.164848

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ubiquitination-independent repression of PRC1 targets during neuronal fate restriction in the developing mouse neocortex2018

    • Author(s)
      Masafumi Tsuboi#, Yusuke Kishi, #* Wakana Kyozuka, Haruhiko Koseki, Yusuke Hirabayashi, and Yukiko Gotoh* (#Co-first author, *Corespondence)
    • Journal Title

      Developmental Cell

      Volume: 47 Pages: 758-772

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Anteroposterior Molecular Registries in Ectodermof the Echinus Rudiment2018

    • Author(s)
      Shinya Adachi, Iyo Niimi, Yui Sakai, Fuminori Sato, Takuya Minokawa, Makoto Urata, Atsuko Sehara-Fujisawa, Isao Kobayashi, and Masaaki Yamaguchi
    • Journal Title

      DEVELOPMENTAL DYNAMICS

      Volume: 247 Pages: 1297-1307

    • DOI

      10.1002/dvdy.24686

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcriptome profiling reveals infection strategy of an insect maculavirus2018

    • Author(s)
      Katsuma S, Kawamoto M, Shoji K, Aizawa T, Kiuchi T, Izumi N, Ogawa M, Mashiko T, Kawasaki H, Sugano S, Tomari Y, Suzuki Y, Iwanaga M.
    • Journal Title

      DNA Research

      Volume: 印刷中 Pages: 277-286

    • DOI

      10.1093/dnares/dsx056

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide characterization of DNA methylation, small RNA expression, and hitone H3 lysine nine di-methylation in Brassica rapa L.2018

    • Author(s)
      Takahashi S, Osabe K, Fukushima N, Takuno S, Miyaji N, Shimizu M, Takasaki-Yasuda T, Suzuki Y, Dennie ES, Seki M, Fujimoto R
    • Journal Title

      DNA Research

      Volume: 25 Pages: 511-520

    • DOI

      10.1093/dnares/dsy021

    • NAID

      120006552896

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Diminished nuclear RNA decay upon Salmonella infection upregulates antibacterial noncoding RNAs2018

    • Author(s)
      Imamura Katsutoshi、Takaya Akiko、Ishida Yo‐ichi、Fukuoka Yayoi、Taya Toshiki、Nakaki Ryo、Kakeda Miho、Imamachi Naoto、Sato Aiko、Yamada Toshimichi、Onoguchi‐Mizutani Rena、Akizuki Gen、Tanu Tanzina、Tao Kazuyuki、Miyao Sotaro、Suzuki Yutaka、Nagahama Masami、Yamamoto Tomoko、Jensen Torben Heick、Akimitsu Nobuyoshi
    • Journal Title

      EMBO J.

      Volume: 37

    • DOI

      10.15252/embj.201797723

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ADAR1-mediated RNA editing is required for thymic self-tolerance and inhibition of autoimmunity.2018

    • Author(s)
      Nakahama T, Kato Y, Kim JI, Vongpipatana T, Suzuki Y, Walkley CR, Kawahara Y.
    • Journal Title

      EMBO Reports

      Volume: 19

    • DOI

      10.15252/embr.201846303

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genomic Characterization of β-Glucuronidase-Positive Escherichia coli 0157 : H7 Producing Stx2a.2018

    • Author(s)
      Ogura Y, Seto K, Morimoto Y, Nakamura K, Sato MP, Gotoh Y, Itoh T, Toyoda A, Ohnishi M, Hayashi T.
    • Journal Title

      Emerg Infect Dis.

      Volume: 24 Pages: 2219-2227

    • DOI

      10.3201/eid2412.180404

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Control of directionality of chromatin folding for the inter- and intra-domain contacts at the Tfap2c-Bmp7 locus.2018

    • Author(s)
      Taro Tsujimura, Osamu Takase, Masahiro Yoshikawa, Etsuko Sano, Matsuhiko Hayashi, Tsuyoshi Takato, Atsushi Toyoda, Hideyuki Okano, Keiichi Hishikawa
    • Journal Title

      Epigenetics & Chromatin

      Volume: 11 Pages: 51-51

    • DOI

      10.1186/s13072-018-0221-1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CNV analysis using whole exome sequencing identified biallelic CNVs of VPS13B in siblings with intellectual disability.2018

    • Author(s)
      Enomoto Y, Tsurusaki Y, Yokoi T, Abe-Hatano C, Ida K, Naruto T, Mitsui J, Tsuji S, Morishita S, Kurosawa K.
    • Journal Title

      Eur J Med Genet.

    • DOI

      10.1016/j.ejmg.2018.12.015

    • Description
      in press
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Current understanding and management of Helicobacter pylori infection : an updated appraisal.2018

    • Author(s)
      Ansari S, Yamaoka Y.
    • Journal Title

      F1000Res.

      Volume: 7

    • DOI

      10.12688/f1000research.14149.1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bolidophyceae, a Sister Picoplanktonic Group of Diatoms-A Review2018

    • Author(s)
      Kuwata Akira、Yamada Kazumasa、Ichinomiya Mutsuo、Yoshikawa Shinya、Tragin Margot、Vaulot Daniel、Lopes dos Santos Adriana
    • Journal Title

      Frontiers in Marine Science

      Volume: 5 Pages: 1-17

    • DOI

      10.3389/fmars.2018.00370

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Exogenous induction of thermogenesis in Arum concinnatum by salicylic acid2018

    • Author(s)
      Laina D, Oikonomou I, Koutroumpa K, Bariotakis M, Kotzabasis K, Ito K, Seymour RS, Pirintsos S
    • Journal Title

      Functional Plant Biology

      Volume: 45 Pages: 1195-1195

    • DOI

      10.1071/fp17247

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A statistical method for observing personal diploid methylomes and transcriptomes with single-molecule real-time sequencing2018

    • Author(s)
      Yuta Suzuki, Yunhao Wang, Kin Au, Shinichi Morishita
    • Journal Title

      Genes

      Volume: 9

    • DOI

      10.3390/genes9090460

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Novel MXD4-NUTM1 fusion transcript identified in primary ovarian undifferentiated small round cell sarcoma.2018

    • Author(s)
      Tamura R, Nakaoka H, Yoshihara K, Mori Y, Yachida N, Nishikawa N, Motoyama T, Okuda S, Inoue I, Enomoto T
    • Journal Title

      Genes Chromosomes Cancer

      Volume: 57 Pages: 557-563

    • DOI

      10.1002/gcc.22668

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Exploring the limits and causes of plastid genome expansion in volvocine green algae.2018

    • Author(s)
      Gaouda, H., Hamaji, T., Yamamoto, K., Kawai-Toyooka, H., Suzuki, M., Noguchi, H., Minakuchi, Y. Toyoda, A., Fujiyama, A., Nozaki, H. and Smith, D. R.
    • Journal Title

      Genome Biol. Evol.

      Volume: 10 Pages: 2248-2254

    • DOI

      10.1093/gbe/evy175

    • NAID

      120006531169

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Characterizing <i>Helicobacter pylori cagA</i> in Myanmar.2018

    • Author(s)
      Myint T, Miftahussurur M, Vilaichone RK, Ni N, Aye TT, Subsomwong P, Uchida T, Mahachai V, Yamaoka Y.
    • Journal Title

      Gut Liver

      Volume: 12 Issue: 1 Pages: 51-57

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Pathogenesis of Helicobacter pylori infection.2018

    • Author(s)
      Waskito LA, Salama NR, Yamaoka Y.
    • Journal Title

      Helicobacter.

      Volume: 23 Issue: Suppl 1

    • DOI

      10.1111/hel.12516

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Refining the clinical phenotype of Okur-Chung neurodevelopmental syndrome.2018

    • Author(s)
      Akahira-Azuma M, Tsurusaki Y, Enomoto Y, Mitsui J, Kurosawa K.
    • Journal Title

      Hum Genome Var.

      Volume: 5 Pages: 18011-18011

    • DOI

      10.1038/hgv.2018.11

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic populations and virulence factors of Helicobacter pylori.2018

    • Author(s)
      Kabamba ET, Tuan VP, Yamaoka Y.
    • Journal Title

      Infect Genet Evol.

      Volume: 60 Pages: 109-116

    • DOI

      10.1016/j.meegid.2018.02.022

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Diffuse Gastric Cancer : A Summary of Analogous Contributing Factors for Its Molecular Pathogenicity.2018

    • Author(s)
      Ansari S, Gantuya B, Tuan VP, Yamaoka Y.
    • Journal Title

      Int J Mol Sci.

      Volume: 19 Issue: 8

    • DOI

      10.3390/ijms19082424

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The role of integrating conjugative elements in Helicobacter pylori : a review.2018

    • Author(s)
      Waskito LA, Yih-Wu J, Yamaoka Y.
    • Journal Title

      J Biomed Sci.

      Volume: 25 Issue: 1 Pages: 86-86

    • DOI

      10.1186/s12929-018-0489-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] HIF2α in the uterine stroma permits embryo invasion and Iuminal epithelium detachment.2018

    • Author(s)
      Matsumoto L, Hirota Y, Saito-Fujita T, Takeda N, Tanaka T, Hiraoka T, Akaeda S, Fujita H, Shimizu-Hirota R, Igaue S, Matsuo M, Haraguchi H, Saito-Kanatani M, Fujii T, Osuga Y.
    • Journal Title

      J Clin Invest

      Volume: 128 Pages: 3186-3197

    • DOI

      10.1172/jci98931

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Surface microstructures are associated with mutational intratumoral heterogeneity in colorectal tumors2018

    • Author(s)
      Harada T., Yamamoto E., Yamano H. O., Aoki H., Matsushita H. O., Yoshikawa K., Takagi R., Harada E., Tanaka Y., Yoshida Y., Eizuka M., Yorozu A., Sudo G., Kitajima H., Niinuma T., Kai M., Sasaki Y., Tokino T., Sugai T., Nakase H., Suzuki H.
    • Journal Title

      J Gastroenterol

      Volume: 53 Pages: 1241-1252

    • DOI

      10.1007/s00535-018-1481-z

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Response to Letter to the Editor Regarding "Genetic Analysis of Ring Finger Protein 213(RNF213)c. 14576G>A in Intracranial Atherosclerosis of the Anterior and Posterior Circulations".2018

    • Author(s)
      Miyawaki S, Shinya Y, Imai H, Hongo H, Ono H, Takenobu A, Nakatomi H, Teraoka A, Saito N.
    • Journal Title

      J Stroke Cerebrovasc Dis.

      Volume: 27 Pages: 2894-2895

    • DOI

      10.1016/j.jstrokecerebrovasdis.2018.07.009

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High-quality overlapping paired-end reads for the detection of A-to-I editing on small RNA.2018

    • Author(s)
      Galipon J, Ishii R, Ishiguro S, Suzuki Y, Kondo S, Okada-Hatakeyama M, Tomita M, Ui-Tei K.
    • Journal Title

      Methods Mol. Biol.

      Volume: 1823 Pages: 167-183

    • DOI

      10.1007/978-1-4939-8624-8_13

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
  • [Journal Article] A Single Pheromone Receptor Gene Conserved across 400 My of Vertebrate Evolution.2018

    • Author(s)
      Suzuki H, Nishida H, Kondo H, Yoda R, Iwata T, Nakayama K, Enomoto T, Wu J, Moriya-Ito K, Miyazaki M, Wakabayashi Y, Kishida T, Okabe M, Suzuki Y, Ito T, Hirota J, Nikaido M
    • Journal Title

      Mol Biol Evol.

      Volume: 35 Issue: 12 Pages: 2928-2939

    • DOI

      10.1093/molbev/msy186

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Retained plsticity and substantial recovery of rod-mediated visual acuity at the visual cortex in blind adult mice with retinal dystrophy2018

    • Author(s)
      Nishiguchi KM, Fujita K, Tokashiki N, Komamura H, Takemoto-Kimura S, Okuno H, Bito H, Nakazawa T.
    • Journal Title

      Mol Ther

      Volume: 26 Pages: 2397-2406

    • DOI

      10.1016/j.ymthe.2018.07.012

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MitoFish and MiFish pipeline : a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding.2018

    • Author(s)
      Yukuto Sato, Masaki Miya, Tsukasa Fukunaga, Tetsuya Sado, and Wataru Iwasaki.
    • Journal Title

      Molecular Biology and Evolution

      Volume: 35 Pages: 1553-1555

    • DOI

      10.1093/molbev/msy074

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Functional domains of NEATI architectural lncRNA induce paraspeckle assembly through phase separation2018

    • Author(s)
      Tomohiro Yamazaki, Sylvie Souquere, Takeshi Chujo, Simon Kobelke, Yee Seng Chong, Archa H, Fox, Charles S, Bond, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose
    • Journal Title

      Molecular Cell

      Volume: 70 Pages: 1038-1053

    • DOI

      10.1016/j.molcel.2018.05.019

    • NAID

      120006648349

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Lanthanide-Dependent Regulation of Methylotrophy in Methylobacteriumaquaticum Strain 22A.2018

    • Author(s)
      Masuda S, Suzuki Y, Fujitani Y, Mitsui R, Nakagawa T, Shintani M, Tani A.
    • Journal Title

      mSphere

      Volume: 3 Issue: 1

    • DOI

      10.1128/msphere.00462-17

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pulmonary Regnase-1 orchestrates the interplay of epithelium and adaptive immune systems to protect against pneumonia.2018

    • Author(s)
      Nakatsuka, Y., Vandenbon, A., Mino, T., Yoshinaga, M., Uehata, T., Cui, X., Sato, A., Tsujimura, T., Suzuki, Y., Sato, A., Handa, T., Chin, K., Sawa, T., Hirai, T., Takeuchi, O.
    • Journal Title

      Mucosal Immunology

      Volume: AOP Pages: 1203-1218

    • DOI

      10.1038/s41385-018-0024-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Transcription factor DUOI generated by neo-functionalization is associated with evolution of sperm differentiation in plants.2018

    • Author(s)
      Higo, A., Kawashima, T., Borg, M., Zhao, M., Lopez-Vidriero, I., Sakayama, H., et al. (他18名)
    • Journal Title

      Nat Commun.

      Volume: 9 Issue: 1 Pages: 5283-5283

    • DOI

      10.1038/s41467-018-07728-3

    • NAID

      120006543439

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ligand-receptor co-evolution shaped the jasmonate pathway in land plants.2018

    • Author(s)
      Monte, I., Ishida, S., Zamarreno, A. M., Hamberg, M., Franco-Zorrilla, J. M., Garcia-Casado, G., Gouhier-Darimont, C., Reymond, P., Takahashi, K., Garcia-Mina, J. M., Nishihama, R., Kohchi, T., and Solano, R.
    • Journal Title

      Nat. Chem. Biol.

      Volume: 14 Pages: 480-488

    • DOI

      10.1038/s41589-018-0033-4

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Layer-specific morphological and molecular differences in neocortical astrocytes and their dependence on neuronal layers2018

    • Author(s)
      Darin Lanjakornsiripan, Baek-Jun Pior, Daichi Kawaguchi, Shohei Furutachi, Tomoaki Tahara, Yu Katsuyama, Yutaka Suzuki, Yugo Fukazawa & Yukiko Gotoh
    • Journal Title

      Nature Communications

      Volume: 9 Pages: 1623-1623

    • DOI

      10.1038/s41467-018-03940-3

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles.2018

    • Author(s)
      Ando Toshiya、Matsuda Takeshi、Goto Kumiko、Hara Kimiko、Ito Akinori、Hirata Junya、Yatomi Joichiro、Kajitani Rei、Okuno Miki、Yamaguchi Katsushi、Kobayashi Masaaki、Takano Tomoyuki、Minakuchi Yohei、Seki Masahide、Suzuki Yutaka、Yano Kentaro、Itoh Takehiko、Shigenobu Shuji、Toyoda Atsushi、Niimi Teruyuki
    • Journal Title

      Nature Communications

      Volume: 9 Pages: 3843-3843

    • DOI

      10.1038/s41467-018-06116-1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Host lignin composition affects haustorium induction in the parasitic plants Phtheirospermum japonicum and Striga hermonthica.2018

    • Author(s)
      Cui S, Wada S, Tobimatsu Y, Takeda Y, Saucet SB, Takano T, Umezawa T, Shirasu K, Yoshida S.
    • Journal Title

      New Phytol.

      Volume: 218 Pages: 710-723

    • DOI

      10.1111/nph.15033

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] LGP2 virus sensor regulates gene expression network mediated by TRBP-bound microRNAs.2018

    • Author(s)
      Takahashi T, Nakano Y, Onomoto K, Murakami F, Komori C, Suzuki Y, Yoneyama M, Ui-Tei.
    • Journal Title

      Nucleic Acids Res.

      Volume: 46 Pages: 9134-9147

    • DOI

      10.1093/nar/gky575

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mutational analysis of uterine cervical cancer that survived multiple rounds of radiotherapy.2018

    • Author(s)
      Nuryadi E, et al
    • Journal Title

      Oncotarget

      Volume: 9 Pages: 32642-32652

    • DOI

      10.18632/oncotarget.25982

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Target amplicon exome-sequencing identifies promising diagnosis and prognostic markers involved in RTK-RAS and PI3K-AKT signaling as central oncopathways in primary central nervous system lymphoma2018

    • Author(s)
      Takashima Y., Sasaki Y., Hayano A., Homma J., Fukai J., Iwadate Y., Kajiwara K., Ishizawa S., Hondoh H., Tokino T., Yamanaka R.
    • Journal Title

      Oncotarget

      Volume: 9 Pages: 27471-27486

    • DOI

      10.18632/oncotarget.25463

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic silencing of miR-200b is associated with cisplatin resistance in bladder cancer.2018

    • Author(s)
      Shindo T, Niinuma T, Nishiyama N, Shinkai N, Kitajima H, Kai M, Maruyama R, Tokino T, Masumori N, Suzuki H.
    • Journal Title

      Oncotarget

      Volume: 9 Pages: 24457-24469

    • DOI

      10.18632/oncotarget.25326

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular dissection of nuclear paraspeckles : towards understanding the emerging world of the RNP milieu2018

    • Author(s)
      Shinichi Nakagawa, Tomohiro Yamazaki, Tetsuro Hirose
    • Journal Title

      Open Biology

      Volume: 8 Pages: 180150-180150

    • DOI

      10.1098/rsob.180150

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effective methods for practical application of gene expression analysis in field-grown rice roots2018

    • Author(s)
      Matsunami, M., Hayashi, H., Tominaga, Y., Nagamura, Y., Murai-Hatano, M., Ishikawa-Sakurai, J., and Kuwagata, T.
    • Journal Title

      Plant and Soil

      Volume: 433 Pages: 173-187

    • DOI

      10.1007/s11104-018-3834-z

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Latent environmental allocation of microbial community data.2018

    • Author(s)
      Higashi K, Suzuki S, Kurosawa S, Mori H, Kurokawa K
    • Journal Title

      PLoS Comp. Biol.

      Volume: 14 Issue: 6

    • DOI

      10.1371/journal.pcbi.1006143

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic landscape at a late stage of stickleback speciation : high genomic divergence interspersed by small localized regions of introgression.2018

    • Author(s)
      Ravinet, M., Yoshida, K., Shigenobu, S., Toyoda, A., Fujiyama, A., and Kitano, J.
    • Journal Title

      PLoS Genetics

      Volume: 14 Issue: 5

    • DOI

      10.1371/journal.pgen.1007358

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Prevalence of Helicobacter pylori and its CagA subtypes in gastric cancer and duodenal ulcer at an Austrian tertiary referral center over 25 years.2018

    • Author(s)
      Kamogawa-Schifter Yumiko、Yamaoka Yoshio、Uchida Tomohisa、Beer Andrea、Tribl Barbara、Scheiger-Hekele Maximilian、Trauner Michael、Dolak Werner
    • Journal Title

      PLoS One.

      Volume: 13 Issue: 5

    • DOI

      10.1371/journal.pone.0197695

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Endoribonuclease ENDU-2 regulates multiple traits including cold tolerance via cell autonomous and nonautonomous controls in C. elegans2018

    • Author(s)
      Ujisawa T., Ohta A., Ii T., Minakuchi Y., Toyoda A., Ii M., Kuhara A.
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 115, 35 Pages: 8823-8828

    • DOI

      10.1073/pnas.1808634115

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] p53-inducible DPYSL4 associates with mitochondrial supercomplexes and regulates energy metabolism in adpocytes and cancer cells.2018

    • Author(s)
      Nagano H, Hashimoto N, Nakayama A, Suzuki S, Miyabayashi Y, Yamato A, Higuchi S, Fujimoto M, Sakuma I, Beppu M, Yokoyama M, Suzuki Y, Sugano S, Ikeda K, Tatsuno I, Manabe I, Yokote K, Inoue S, Tanaka T.
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 115 Issue: 33 Pages: 8370-8375

    • DOI

      10.1073/pnas.1804243115

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Base-pairing probability in the microRNA stem region affects the binding and editing specificity of human A-to-I editing enzyme ADAR1-p110 and ADAR2.2018

    • Author(s)
      Ishiguro S, Galipon J, Ishii R, Suzuki Y, Kondo S, Okada-Hatakeyama M, Tomita M, Ui-Tei K.
    • Journal Title

      RNA Biology

      Volume: 15 Pages: 976-989

    • DOI

      10.1080/15476286.2018.1486658

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide analysis revealed that DZNep reduces tubulointerstitial fibrosis via down-regulation of pro-fibrotic genes.2018

    • Author(s)
      Mimura I, Hirakawa Y, Kanki Y, Nakaki R, Suzuki Y, Tanaka T, Aburatani H, Nangaku M.
    • Journal Title

      Sci Rep

      Volume: 28 Issue: 1 Pages: 3779-3779

    • DOI

      10.1038/s41598-018-22180-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Time-Series Analysis of Tumorigenesis in a Murine Skin Carcinogenesis Model.2018

    • Author(s)
      Aoto Y, Okumura K, Hachiya T, Hase S, Wakabayashi Y, Ishikawa F, Sakakibara Y.
    • Journal Title

      Sci Rep

      Volume: 8 Issue: 1 Pages: 12994-12994

    • DOI

      10.1038/s41598-018-31349-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Distribution and clinical associations of integrating conjugative elements and cag pathogenicity islands of Helicobacter pylori in Indonesia.2018

    • Author(s)
      Waskito LA, Miftahussurur M, Lusida MI, Syam AF, Suzuki R, Subsomwong P, Uchida T, Hamdan M, Nasronudin, Yamaoka Y.
    • Journal Title

      Sci Rep.

      Volume: 8 Issue: 1 Pages: 6073-6073

    • DOI

      10.1038/s41598-018-24406-y

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Naturally occurring a loss of a giant plasmid from Mycobacterium ulcerans subsp. shinshuense makes it non-pathogenic.2018

    • Author(s)
      Nakanaga K, Ogura Y, Toyoda A, Yoshida M, Fukano H, Fujiwara N, Miyamoto Y, Nakata N, Kazumi Y, Maeda S, Ooka T, Goto M, Tanigawa K, Mitarai S, Suzuki K, Ishii N, Ato M, Hayashi T, Hoshino Y.
    • Journal Title

      Sci Rep.

      Volume: 29;8(1) Issue: 1 Pages: 8218-8218

    • DOI

      10.1038/s41598-018-26425-1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The prehistoric peopling of Southeast Asia2018

    • Author(s)
      Hugh McColl, Fernando Racimo, Lasse Vinner, Fabrice Demeter, Takashi Gakuhari, …, Hajime Ishida, … Eske Willerslev
    • Journal Title

      Science

      Volume: 361(6397) Pages: 65-75

    • DOI

      10.1126/science.aat3628

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Epidemiology of Helicobacter pylori and CagA-Positive Infections and Global Variations in Gastric Cancer.2018

    • Author(s)
      Park JY, Forman D, Waskito LA, Yamaoka Y, Crabtree JE.
    • Journal Title

      Toxins (Base1)

      Volume: 10 Issue: 4 Pages: 163-163

    • DOI

      10.3390/toxins10040163

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Targeted next-generation sequencing of 50 cancer-related genes in Japanese patients with oral squamous cell carcinoma2018

    • Author(s)
      Nakagaki T., Tamura M., Kobashi K., Omori A., Koyama R., Idogawa M., Ogi K., Hiratsuka H., Tokino T., Sasaki Y.
    • Journal Title

      Tumour Biol

      Volume: 40 Pages: 0-0

    • DOI

      10.1177/1010428318800180

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular characterization of eye pigmentation-related ABC transporter genes in the ladybird beetle Harmonia axyridis reveals striking gene duplication of the white gene.2018

    • Author(s)
      Tsuji, T., Gotoh, H., Morita, S. Hirata, J., Minakuchi, Y., Yaginuma, T., Toyoda, A. and Niimi, T.
    • Journal Title

      Zool. Sci.

      Volume: 35 Pages: 260-267

    • DOI

      10.2108/zs170166

    • NAID

      40021616750

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tissue network underlying cold tolerance2018

    • Author(s)
      Mayu Fujita, Kohei Ohnishi, Akane Ohta, Atsushi Kuhara
    • Journal Title

      細胞

      Volume: 50 Pages: 8-11

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ネギ萎凋病の抵抗性に関与する遺伝子群の特定に成功 -近縁種シャロットがもつ抵抗性をネギに導入することで国内初の抗性品種育成を目指す-2018

    • Author(s)
      執行正義
    • Journal Title

      農耕と園芸

      Volume: 7 Pages: 16-20

    • Related Report
      2018 Annual Research Report
  • [Journal Article] DFAST : a flexible prokaryotic genome annotation pipeline for faster genome publication2018

    • Author(s)
      Y Tanizawa, T Fujisawa, Y Nakamura
    • Journal Title

      Bioinformatics

      Volume: 34 Issue: 6 Pages: 1037-1039

    • DOI

      10.1093/bioinformatics/btx713

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities2018

    • Author(s)
      Taichi Hagio, Shun Sakuraba, Junichi Iwakiri, Ryota Mori and Kiyoshi Asai
    • Journal Title

      BMC Bioinformatics

      Volume: 19 Issue: Suppl 1 Pages: 38-38

    • DOI

      10.1186/s12859-018-2018-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Introducing difference recurrence relations for faster semi-global alignment of long sequences2018

    • Author(s)
      Hajime Suzuki and Masahiro Kasahara.
    • Journal Title

      BMC Bioinformatics

      Volume: 19 Issue: Suppl 1 Pages: 45-45

    • DOI

      10.1186/s12859-018-2014-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identifying statistically significant combinatorial markers for survival analysis.2018

    • Author(s)
      Relator R, Terada A, Sese J.
    • Journal Title

      BMC Medical Genomics

      Volume: 11 Issue: Suppl 2 Pages: 31-31

    • DOI

      10.1186/s12920-018-0346-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] EAGLE : Explicit Alternative Genome Likelihood Evaluator.2018

    • Author(s)
      Kuo T, Frith M C, Sese J, and Horton P.
    • Journal Title

      BMC Medical Genomics.

      Volume: 11 Issue: Suppl 2 Pages: 28-28

    • DOI

      10.1186/s12920-018-0342-1

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] VITCOMIC2 : visualization tool for the phylogenetic composition of microbial communities based on 16SrRNA gene amplicons and metagenomic shotgun sequencing2018

    • Author(s)
      Mori H, Maruyama T, Yano M, Yamada T, Kurokawa K.
    • Journal Title

      BMC Systems Biology

      Volume: 12 Pages: 30-30

    • DOI

      10.1186/s12918-018-0545-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Combined mutation of Apc, Kras and Tgfbr2 effectively drives metastasis of intestinal cancer.2018

    • Author(s)
      Sakai E, Nakayama M, Oshima H, Kouyama Y, Niida A, Fujii S, Ochiai A, Nakayama KI, Mimori K, Suzuki Y, Hong CP, Ock CY, Kim SJ, and Oshima M.
    • Journal Title

      Cancer Research

      Volume: 78 Pages: 1334-1346

    • DOI

      10.1158/0008-5472.can-17-3303

    • NAID

      120006452378

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Transcription factor IRF8 governs enhancer landscape dynamics in mononuclear phagocyte progenitors2018

    • Author(s)
      Kurotaki D, Nakabayashi J, Nishiyama A, Sasaki H, Kawase W, Kaneko N, Ochiai K, Igarashi K, Ozato K, Suzuki Y, Tamura T
    • Journal Title

      Cell Reports

      Volume: 22 Pages: 2628-2641

    • DOI

      10.1016/j.celrep.2018.02.048

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Anisogamy evolved with a reduced sex-determining region in volvocine green algae.2018

    • Author(s)
      Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G. And Nozaki, H.
    • Journal Title

      Communications Biology

      Volume: 1 Pages: 17-17

    • DOI

      10.1038/s42003-018-0019-5

    • NAID

      120006601539

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of DNA methylated regions by using methylated DNA immunoprecipitation sequencing in Brassica rapa2018

    • Author(s)
      Takahashi S, Fukushima N, Osabe K, Itabashi E, Shimizu M, Miyaji N, Takasaki-Yasuda T, Suzuki Y, Seki M, Fujimoto R
    • Journal Title

      Crop & Pasture Science

      Volume: 69 Pages: 107-107

    • DOI

      10.1071/cp17394

    • NAID

      120006546778

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular and Cellular Network Systems Underlying Cold Tolerance of Caenorhabditis elegans2018

    • Author(s)
      Kohei OHNISHI, Natsune TAKAGAKI, Misaki OKAHATA, Mayu FUJITA, Akane OHTA, Atsushi KUHARA
    • Journal Title

      Cryobiology and Cryotechnology

    • Description
      in press 未定
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Subtypes of the Type II Pit Pattern Reflect Distinct Molecular Subclasses in the Serrated Neoplastic Pathway.2018

    • Author(s)
      Aoki H, Yamamoto E, Yamano HO, Sugai T, Kimura T, Tanaka Y, Matsushita HO, Yoshikawa K, Takagi R, Harada E, Nakaoka M, Yoshida Y, Harada T, Sudo G, Eizuka M, Yorozu A, Kitajima H, Niinuma T, Kai M, Nojima M, Suzuki H, Nakase H.
    • Journal Title

      Digestive Diseases and Sciences

      Volume: 15 Pages: 1920-1928

    • DOI

      10.1007/s10620-018-5016-5

    • Description
      not yet
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Diminished nuclear RNA decay upon Salmonella infection upregulates antibacterial noncoding RNAs2018

    • Author(s)
      Imamura K, Takaya A, Ishida Y, Fukuoka Y, Taya T, Nakaki R, Kakeda M, Imamachi N, Sato A, Yamada T, Onoguchi-Mizutani R, Akizuki G, Tanu T, Tao K, Miyao S, Suzuki Y, Nagahama M, Yamamoto T, Jensen TH, Akimitsu N.
    • Journal Title

      EMBO Journal

    • Description
      accepted
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mice with endogenous TDP-43 mutations exhibit gain of splicing function and characteristics of amyotrophic lateral sclerosis.2018

    • Author(s)
      Fratta P, Sivakumar P, Humphrey J, Lo K, Ricketts T, Oliveira H, Brito JM, Kalmar B, Ule A, Yu Y, Gondo Y, 他18名, Buratti E, Plagnol V, Fisher EM, Acevedo A
    • Journal Title

      EMBO Journal

      Volume: 37

    • DOI

      10.15252/embj.201798684

    • Description
      in press
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Targeted sequencing reveals genetic variants associated with sensitivity of 79 human cancer xenografts to anticancer drugs.2018

    • Author(s)
      Udagawa C, Sasaki Y, Suemizu H, Ohnishi Y, Ohnishi H, Tokino T, Zembutsu H.
    • Journal Title

      Exp Ther Med

      Volume: 15 Pages: 1339-1359

    • DOI

      10.3892/etm.2017.5533

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of Minimal p53 Promoter Region Regulated by MALAT1 in Human Lung Adenocarcinoma Cells.2018

    • Author(s)
      Tano K, Onoguchi-Mizutani R, Yeasmin F, Uchiumi F, Suzuki Y, Yada T, Akimitsu N.
    • Journal Title

      Frontier in Genetics

      Volume: なし Pages: 208-208

    • DOI

      10.3389/fgene.2017.00208

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Delayed Degradation and Impaired Dondritic Delivery of Intron-Lacking EGFP-Arc/Arg3.1 mRNA in EGFP-Arc Transgenic Mice.2018

    • Author(s)
      Steward O, Matsudaira Yee K, Farris S, Pirbhoy PS, Worley P, Okamura K, Okuno H, Bito H.
    • Journal Title

      Front Mol Neurosci

      Volume: 10 Pages: 1-1

    • DOI

      10.3389/fnmol.2017.00435

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of transposable elements contributing to tissue-specific expression of long non-coding RNAs2018

    • Author(s)
      Takashi Chishima, Junichi Iwakiri, Michiaki Hamada
    • Journal Title

      Genes

      Volume: 9 Issue: 1 Pages: 23-23

    • DOI

      10.3390/genes9010023

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Increasing canopy photosynthesis in rice can be achieved without a large increase in water use-a model based on free-air CO2 enrichment2018

    • Author(s)
      Ikawa, H., Chen, C.P., Sikma, M., Yoshimoto, M., Sakai, H., Tokida, T., Usui, Y., Nakamura, H., Ono, K., Maruyama, M., Watanabe, T., Kuwagata, T., and Hasegawa, T.
    • Journal Title

      Global Change Biology

      Volume: 24 Pages: 1321-1341

    • DOI

      10.1111/gcb.13981

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A Common variant of MAF/c-MAF, transcriptional factor genc in the kidney, is associated with gout susceptjbility.2018

    • Author(s)
      Toshihide Higashino, Hirotaka Matsuo, Yukinori Okada, Hiroshi Nakashima, Seiko Shimizu, Masayuki Sakiyama, Shin Tadokoro, Akiyoshi Nakayama, Makoto Kawaguchi, Mako Komatsu, Asahi Hishida, Masahiro Nakatochi, Hiroshi Ooyama, Junko Imaki, Nariyoshi Shinomiy
    • Journal Title

      Hum Cell.

      Volume: 31 Pages: 10-13

    • DOI

      10.1007/s13577-017-0186-6

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Estimating energy parameters for RNA secondary structure predictions using both experimental and computational data2018

    • Author(s)
      Shimpei Nishida, Shun Sakuraba, Kiyoshi Asai, and Michiaki Hamada
    • Journal Title

      IEEE/ACM Transactions on Computational Biology and Bioinformatics

      Volume: -

    • DOI

      10.1109/tcbb.2018.2813388

    • Description
      in press
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tropomyosin isoforms differentially affect muscle contractility in the head and body regions in the nematode Caenorhabditis elegans.2018

    • Author(s)
      Dawn E. Barnes, Eichi Watabe, Kanako Ono, Euiyoung Kwak, Hidehito Kuroyanagi, Shoichiro Ono
    • Journal Title

      Mol Biol Cell

      Volume: 29 Pages: 1075-1088

    • DOI

      10.1091/mbc.e17-03-0152

    • Description
      未定
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular insights into the non-recombining nature of the spinach male-determining region.2018

    • Author(s)
      Kudoh T., M. Takahashi, T. Osabe, A. Toyoda, H. Hirakawa, Y. Suzuki, N. Ohmido, Y. Onodera
    • Journal Title

      Molecular Genetics and Genomics

      Volume: 293 Issue: 2 Pages: 557-568

    • DOI

      10.1007/s00438-017-1405-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Expansions of intronic TTTCA and TTTTA repeats in benign adult familial myoclonic epilepsy2018

    • Author(s)
      Ishiura Hiroyuki、Doi Koichiro、Mitsui Jun、Yoshimura Jun、Matsukawa Miho Kawabe、Takahashi Yuji、Date Hidetoshi、Matsukawa Takashi、Shimizu Jun、Koh Kishin、Takiyama Yoshihisa、Goto Jun、Morishita Shinichi、Tsuji Shoji
    • Journal Title

      nature genetics

      Volume: 50 Pages: 581-590

    • DOI

      10.1038/s41588-018-0067-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dynamically and epigenetically coordinated GATA/ETS/SOX transcription factor expression is indispensable for endothelial cell differentiation.2018

    • Author(s)
      Kanki Y, Nakaki R, Shimamura T, Matsunaga T, Yamamizu K, Katayama S, Suehiro JI, Osawa T, Aburatani H, Kodama T, Wada Y, Yamashita JK, Minami T.
    • Journal Title

      Nucleic Acids Res.

      Volume: 印刷中 Pages: 4344-4358

    • DOI

      10.1093/nar/gkx159

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] DBTSS/DBKERO for integrated analysis of transcriptional regulation2018

    • Author(s)
      Suzuki A, Kawano S, Mitsuyama T, Suyama M, Kanai Y, Shirahige K, Sasaki H, Tokunaga K, Tsuchihara K, Sugano S, Nakai K, Suzuki Y.
    • Journal Title

      Nucleic Acids Research

      Volume: 46 Issue: (D1)

    • DOI

      10.1093/nar/gkx1001

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mining of the Uncharacterized Cytochrome P450 Genes Involved in Alkaloid Biosynthesis in California Poppy Using a Draft Genome Sequence.2018

    • Author(s)
      Hori K, Yamada Y, Purwanto R, Minakuchi Y, Toyoda A, Hirakawa H, Sato F.
    • Journal Title

      Plant Cell Physiol.

      Volume: 59 Issue: 2 Pages: 222-233

    • DOI

      10.1093/pcp/pcx210

    • NAID

      120006384165

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Impaired diversity of the lung microbiome predicts progression of idiopathic pulmonary fibrosis.2018

    • Author(s)
      Takahashi Y, Saito A, Chiba H, Kuronuma K. Ikeda K. Kobayashi T, Ariki S, Takahashi M, Sasaki Y, Takahashi H.
    • Journal Title

      Respiratory Research

      Volume: 19 Pages: 34-34

    • DOI

      10.1186/s12931-018-0736-9

    • Description
      印刷中
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The CCR4-NOT deadenylase complex controls Atg7-dependent cell death and heart function.2018

    • Author(s)
      Yamaguchi Tomokazu et al
    • Journal Title

      Sci. Signal.

      Volume: 11 Issue: 516 Pages: 3638-3638

    • DOI

      10.1126/scisignal.aan3638

    • NAID

      120006707526

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines2018

    • Author(s)
      Sarun Sereewattanawoot, Ayako Suzuki, Masahide Seki, Yoshitaka Sakamoto, Takashi Kohno, Sumio Sugano, Katsuya Tsuchihara & Yutaka Suzuki
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 4926-4926

    • DOI

      10.1038/s41598-018-23342-1

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response.2018

    • Author(s)
      Kashima Y, Suzuki A, Liu Y, Hosokawa M, Matsunaga H, Shirai M, Arikawa K, Sugano S, Suzuki Y., et al
    • Journal Title

      Scientific Reports

      Volume: volume 8 Pages: 3482-3482

    • DOI

      10.1038/s41598-018-21161-y

    • NAID

      130007556165

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia.2018

    • Author(s)
      Kumagai Y, Yoshizawa S, Nakajima Y, Watanabe M, Fukunaga T, Ogura Y, Hayashi T, Oshima K, Hattori M, Ikeuchi M, Kogure K, DeLong EF, Iwasaki W
    • Journal Title

      The ISME Journal

      Volume: in press Pages: 1329-1343

    • DOI

      10.1038/s41396-018-0058-4

    • Description
      Early access
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ナノポアリードのアライメントツール2018

    • Author(s)
      鈴木 創, 笠原雅弘
    • Journal Title

      実験医学

      Volume: 36 Issue: 1

    • Related Report
      2017 Annual Research Report
  • [Journal Article] イチゴ新品種‘恋みのり’が有する炭疽病抵抗性-Colletotrichum gloeosporioides種複合体の菌種による差異の一例-2018

    • Author(s)
      遠藤(飛川)みのり
    • Journal Title

      植物防疫

      Volume: 72 Pages: 236-240

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.2018

    • Author(s)
      Koji Yano, Seishiro Aoki, Meng Liu, Yosuke Umehara, Norio Suganuma, Wataru Iwasaki, Shusei Sato, Takashi Soyano, Hiroshi Kouchi and Masayoshi Kawaguchi.
    • Journal Title

      DNA Res.

      Volume: 印刷中 Pages: 193-203

    • DOI

      10.1093/dnares/dsw052

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Long-term expansion of alveolar stem cells derived from human iPS cells by forming organoids.2018

    • Author(s)
      Yamamoto Y, Gotoh S, Korogi Y, Seki M, Konishi S, Ikeo S, Sone N, Nagasaki T, Matsumoto H, Muro S, Hirai T, Ito I, Kohno T, Suzuki Y, Mishima M.
    • Journal Title

      Nat Methods.

      Volume: 14 Issue: 11 Pages: 1097-1106

    • DOI

      10.1038/nmeth.4448

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic silencing of SMOCI in traditional serrated adenoma and colorectal cancer.2018

    • Author(s)
      Aoki H, Yamamoto E, Takasawa A, Niinuma T, Yamano HO, Harada T, Matsushita HO, Yoshikawa K, Takagi R, Harada E, Tanaka Y, Yoshida Y, Aoyama T, Eizuka M, Yorozu A, Kitajima H, Kai M, Sawada N, Sugai T, Nakase H, Suzuki H.
    • Journal Title

      Oncotarget

      Volume: 9 Pages: 4707-4721

    • DOI

      10.18632/oncotarget.23523

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] <b>Methods for analyzing next-generation sequencing dataVI. genome assembly </b>2017

    • Author(s)
      谷澤 靖洋、神沼 英里、中村 保一、清水 謙多郎、門田 幸二
    • Journal Title

      Japanese Journal of Lactic Acid Bacteria

      Volume: 27 Issue: 1 Pages: 41-52

    • DOI

      10.4109/jslab.27.41

    • NAID

      130005628247

    • ISSN
      1343-327X, 2186-5833
    • Year and Date
      2017-04-26
    • Related Report
      2016 Annual Research Report
    • Open Access
  • [Journal Article] Significance of measurement of serum trough level and anti-drug antibody of adalimumab as personalised pharmacokinetics in patients with Crohn's disease : a subanalysis of the DIAMOND trial.2017

    • Author(s)
      Nakase H, Motoya S, Matsumoto T, Watanabe K, Hisamatsu T, Yoshimura N, Ishida T, Kato S, Nakagawa T, Esaki M, Nagahori M, Matsui T, Naito Y, Kanai T, Suzuki Y, Nojima M, Watanabe M, Hibi T; DIAMOND study group.
    • Journal Title

      Aliment Pharmacol Ther.

      Volume: 46 Pages: 873-882

    • DOI

      10.1111/apt.14318

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes2017

    • Author(s)
      Nakayama A, Nakaoka H, Yamamoto K, Sakiyama M, Shaukat A, Toyoda Y, Okada Y, Kamatani Y, Nakamura T. Takada T, Inoue K, Yasujima T, Yuasa H, Shirahama Y, Wakai K. Kubo M. Matsuo H.
    • Journal Title

      Ann Rheum Dis

      Volume: 76 Pages: 869-877

    • DOI

      10.1136/annrheumdis-2016-209632

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Training alignment parameters for arbitrary sequencers with last-train,2017

    • Author(s)
      Michiaki Hamada, Yukiteru Ono, Kiyoshi Asai, Martin C, Frith
    • Journal Title

      Bioinformatics

      Volume: 33 Issue: 6 Pages: 926-928

    • DOI

      10.1093/bioinformatics/btw742

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Computational prediction of lncRNA-mRNA interactions by integrating tissue2017

    • Author(s)
      Junichi Iwakiri, Goro Terai, Michiaki Hamada
    • Journal Title

      Biology Direct

      Volume: 12 Pages: 15-15

    • DOI

      10.1186/s13062-017-0183-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri2017

    • Author(s)
      Yasuhiro TANIZAWA, Hisami KOBAYASHI, Eli KAMINUMA, Mitsuo SAKAMOTO, Moriya OHKUMA, Yasukazu NAKAMURA, Masanori ARITA, Masanori TOHNO
    • Journal Title

      Bioscience of Microbiota, Food and Health

      Volume: 36 Issue: 3 Pages: 129-134

    • DOI

      10.12938/bmfh.16-026

    • NAID

      130005759236

    • ISSN
      2186-3342
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia.2017

    • Author(s)
      Takahashi H, Kusuya Y, Hagiwara D, Takahashi-Nakaguchi A, Sakai K, Gonoi T.
    • Journal Title

      BMC Genomics

      Volume: 18 Issue: 1 Pages: 942-942

    • DOI

      10.1186/s12864-017-4316-z

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evolutionary acquisition of promoter-associated non-coding RNA (pancRNA) repertoires diversifies species-dependent gene activation mechanisms in mammals.2017

    • Author(s)
      Masahiro Uesaka, Kiyokazu Agata, Takao Oishi, Kinichi Nakashima, Takuya Imamura
    • Journal Title

      BMC Genomics

      Volume: 18 Pages: 285-285

    • DOI

      10.1186/s12864-017-3662-1

    • NAID

      120006305760

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data2017

    • Author(s)
      Vasanthan Jayakumar and Yasubumi Sakakibara
    • Journal Title

      Briefings in Bioinformatics

    • DOI

      10.1093/bib/bbx147

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification and characterization of a metastatic suppressor BRMSIL as target gene of p53.2017

    • Author(s)
      Koyama R, Tamura M, Nakagaki T, Ohashi T, Idogawa M, Suzuki H, Tokino T, Sasaki Y.
    • Journal Title

      Cancer Science

      Volume: 108 Pages: 2413-2421

    • DOI

      10.1111/cas.13420

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Insights into land plant evolution garnered from the Marchantia polymorpha genome2017

    • Author(s)
      Bowman J, Kouchi T,..(106名)..Yokoyama R, ..(4名)
    • Journal Title

      Cell.

      Volume: 171 Pages: 287-304

    • DOI

      10.1016/j.cell.2017.09.030

    • NAID

      120006353839

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Light controls protein localization through phytochrome-mediated alternative promoter selection.2017

    • Author(s)
      Ushijima T, Hanada K, Gotoh E, Yamori W, Kodama Y, Tanaka H, Kusano M, Fukushima A, Tokizawa M, Yamamoto YY, Tada Y, Suzuki Y, and Matsushita T
    • Journal Title

      Cell

      Volume: 171 Pages: 1316-1325

    • DOI

      10.1016/j.cell.2017.10.018

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regnase-1 Maintains Iron Homeostasis via the Degradation of Transferrin Receptor 1 and Prolyl-Hydroxylase-Domain-Containing Protein 3 mRNAs.2017

    • Author(s)
      Yoshinaga, M., Nakatsuka, Y., Vandenbon, A., Ori, D., Uehata, T., Tsujimura, T., Suzuki, Y., Mino, T., Takeuchi, O.
    • Journal Title

      Cell Reports

      Volume: 19 Issue: 8 Pages: 1614-1630

    • DOI

      10.1016/j.celrep.2017.05.009

    • NAID

      120006305989

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA methylome analysis identifies transcription factor-based epigenomic signatures of multilineage competence in neural stem/progenitor cells.2017

    • Author(s)
      Sanosaka T, Imamura T, Hamazaki N, Chai M, Igarashi K, Ideta-Otsuka M, Miura F, Ito T, Fujii N, Ikeo K, Nakashima K.
    • Journal Title

      Cell Reports

      Volume: 20 Pages: 2992-2992

    • DOI

      10.1016/j.celrep.2017.08.086

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An efficient method to generate conditional knockout cell lines for essential genes by combination of auxin-inducible degron tag and CRISPR/Cas9.2017

    • Author(s)
      Nishimura, K and Fukagawa T
    • Journal Title

      Chromosome Res.

      Volume: 25 Pages: 253-260

    • DOI

      10.1007/s10577-017-9559-7

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Association of M18BP1/KNL2 with CENP-A Nucleosome Is Essential for Centromere Formation in Non-mammalian Vertebrates.2017

    • Author(s)
      Hori T, Shang WH, Hara M, Ariyoshi M, Arimura Y, Fujita R, Kurumizaka H, Fukagawa T.
    • Journal Title

      Dev Cell

      Volume: 42 Pages: 181-189

    • DOI

      10.1016/j.devcel.2017.06.019

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer2017

    • Author(s)
      Ayako Suzuki, Mizuto Suzuki, Junko Mizushima-Sugano, Martin C Frith, Wojciech Makatowski, Takashi Kohno, Sumio Sugano, Katsuya Tsuchihara & Yutaka Suzuki
    • Journal Title

      DNA Research

      Volume: 24 Issue: 6 Pages: 585-596

    • DOI

      10.1093/dnares/dsx027

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line.2017

    • Author(s)
      Fujita, T., Kitaura, F., Yuno, M., Suzuki, Y., Sugano, S., and Fujii, H.
    • Journal Title

      DNA Research

      Volume: 24 Pages: 537-548

    • DOI

      10.1093/dnares/dsx023

    • NAID

      120006583339

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] F4/80+ macrophages contribute to clearance of senescent cells in the mouse postpartum uterus.2017

    • Author(s)
      Mahiro Egashira,Yasushi Hirota,Ryoko Shimizu-Hirota,Tomoko Saito-Fujita,Hirofumi Haraguchi,Leona Matsumoto,Mitsunori Matsuo,Takehiro Hiraoka,Tomoki Tanaka,Shun Akaeda,Chiaki Takehisa, Mayuko Saito-Kanatani, Kei-ichiro Maeda, Tomoyuki Fujii,Yutaka Osuga
    • Journal Title

      Endocrinology

      Volume: 158 Pages: 2344-2353

    • DOI

      10.1210/en.2016-1886

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts2017

    • Author(s)
      Ryohei Nakamura, Ayako Uno, Masahiko Kumagai, Shinichi Morishita and Hiroyuki Takeda
    • Journal Title

      Epigenetics & Chromatin

      Volume: 10 Pages: 44-44

    • DOI

      10.1186/s13072-017-0152-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes.2017

    • Author(s)
      Ishikawa, A., Kusakabe, M., Ravinet, M., Yoshida, K., Makino, T., Toyoda, A. Fujiyama, A., and Kitano, J.
    • Journal Title

      Evolution

      Volume: 71 Pages: 565-581

    • DOI

      10.1111/evo.13175

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] An ENU-induced p. C225S missense mutation in the mouse Tgfb1 gene does not cause Camurati-Engelmann disease-like skeletal phenotypes.2017

    • Author(s)
      Ichimura S, Sasaki S, Murata T, Fukumura R, Gondo Y, Ikegawa S, Furuichi T
    • Journal Title

      Exp. Anim.

      Volume: 66 Issue: 2 Pages: 137-144

    • DOI

      10.1538/expanim.16-0085

    • NAID

      130005635560

    • ISSN
      1341-1357, 1881-7122
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Seasonal analysis of microbial communities in precipitation in the Greater Tokyo Area, Japan.2017

    • Author(s)
      Satoshi Hiraoka, Masaya Miyahara, Kazushi Fujii, Asako Machiyama, and Wataru Iwasaki.
    • Journal Title

      Frontiers in Microbiology

      Volume: 8 Pages: 1506-1506

    • DOI

      10.3389/fmicb.2017.01506

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Differential Binding of Three Major Human ADAR Isoforms to Coding and Long Non-Coding Transcripts.2017

    • Author(s)
      Josephine Galipon, Rintaro Ishii, Yutaka Suzuki, Masaru Tomita, and Kumiko Ui-Tei.
    • Journal Title

      Genes(Basel)

      Volume: 8 Issue: 2 Pages: 68-68

    • DOI

      10.3390/genes8020068

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Identification of physical interactions between genomic regions by enChIP-Seq.2017

    • Author(s)
      Fujita, T., Yuno, M., Suzuki, Y., Sugano, S., and Fujii, H.
    • Journal Title

      Genes to Cells

      Volume: 22 Pages: 506-520

    • DOI

      10.1111/gtc.12492

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Super Biofilm-Elaborating Staphylococcus aureus Isolated in Japan.2017

    • Author(s)
      Yu L, Hisatsune J, Hirakawa H, Mizumachi E, Toyoda A, Yahara K, Sugai M.
    • Journal Title

      Genome Announc.

      Volume: 5 Issue: 41

    • DOI

      10.1128/genomea.01043-17

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multiple Independent Changes in Mitochondrial Genome Conformation in Chlamydomonadalean Algae.2017

    • Author(s)
      Takashi Hamaji, Hiroko Kawai Toyooka, Atsushi Toyoda, Yohei Minakuchi, Masahiro Suzuki, Asao Fujiyama, Hisayoshi Nozaki and David Roy Smith.
    • Journal Title

      Genome Biology and Evolution

      Volume: 9 Issue: 4 Pages: 993-999

    • DOI

      10.1093/gbe/evx060

    • NAID

      120006358595

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A novel UBE2A mutation causes X-linked intellectual disability type Nascimento.2017

    • Author(s)
      Tsurusaki Y, Ohashi I, Enomoto Y, Naruto T, Mitsui J, Aida N, Kurosawa K.
    • Journal Title

      Hum Genome Var.

      Volume: 4 Pages: 17019-17019

    • DOI

      10.1038/hgv.2017.19

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Phagocytic Function of Macrophage-Enforcing Innate Immunity and Tissue Homeostasis.2017

    • Author(s)
      Hirayama D, Iida T, Nakase H.
    • Journal Title

      Int J Mol Sci.

      Volume: 19 Pages: 92-92

    • DOI

      10.3390/ijms19010092

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation of a novel fluorescent nanobeacon for targeted imaging of Thomsen-Friedenreich associated colorectal cancer.2017

    • Author(s)
      Nakase H, Sakuma S, Fukuchi T, Yoshino T, Mohri K, Miyata K, Kumagai H, Hiwatari KI, Tsubaki K, Ikejima T, Tobita E, Zhu M, Wilson KJ, Washington K, Gore JC, Pham W.
    • Journal Title

      Int J Nanomedicine.

      Volume: 12 Pages: 1747-1755

    • DOI

      10.2147/ijn.s124174

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Constitutive centromere-associated network controls centromere drift in vertebrate cells.2017

    • Author(s)
      Hori T, Kagawa N, Toyoda A, Fujiyama A, Misu S, Monma N, Makino F, Ikeo K, Fukagawa T.
    • Journal Title

      J Cell Biol.

      Volume: 1 Pages: 101-113

    • DOI

      10.1083/jcb.201605001

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Phylogeography of the yellowfin goby Acanthogobius flavimanus in native and non-native distributions.2017

    • Author(s)
      Shotaro Hirase, Sherrie Chambers, Kathryn Hassell, Melissa Carew, Vincent Pettigrove, Kiyoshi Soyano, Masaki Nagae, and Wataru Iwasaki.
    • Journal Title

      Marine Biology

      Volume: 164 Pages: 106-106

    • DOI

      10.1007/s00227-017-3137-6

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Population structure of Escherichia coli 026 : HII with recent and repeated stx2 acquisition in multiple lineages2017

    • Author(s)
      Ogura Yoshitoshi、Gotoh Yasuhiro、Itoh Takehiko、et al.
    • Journal Title

      Microb Genom

      Volume: 3

    • DOI

      10.1099/mgen.0.000141

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The complete mitochondrial genome sequence and phylogenetic analysis of Luciola lateralis, one of the most famous firefly in Japan (Coleoptera : Lampyridae)2017

    • Author(s)
      Maeda J, Kato D, Arima K, Ito Y, Toyoda A, Noguchi H
    • Journal Title

      Mitochondrial DNA Part B

      Volume: 2 Pages: 546-547

    • DOI

      10.1080/23802359.2017.1365640

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The complete mitogenome and phylogenetic analysis of Japanese firefly ‘Genji Botaru’ Luciola cruciata (Coleoptera : Lampyridae)2017

    • Author(s)
      Maeda J, Kato D, Arima K, Ito Y, Toyoda A, Noguchi H
    • Journal Title

      Mitochondrial DNA Part B

      Volume: 2 Pages: 522-523

    • DOI

      10.1080/23802359.2017.1365641

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Centromere evolution and CpG methylation during vertebrate speciation2017

    • Author(s)
      Ichikawa K, Tomioka S, Suzuki Y, Nakamura R, Doi K, Yoshimura J, Kumagai M, Inoue Y, Uchida Y, Irie N, Takeda H, Morishita S.
    • Journal Title

      Nature Communications

      Volume: 1833 Pages: 1722-1730

    • DOI

      10.1038/s41467-017-01982-7

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Generalist species drive microbial dispersion and evolution.2017

    • Author(s)
      Sira Sriswasdi, Ching-chia Yang, and Wataru Iwasaki.
    • Journal Title

      Nature Communications

      Volume: 8 Pages: 1162-1162

    • DOI

      10.1038/s41467-017-01265-1

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Complete fusion of a transposon and herpesvirus created the Teratorn mobile element in medaka fish2017

    • Author(s)
      Inoue Y, Saga T, Aikawa T, Kumagai M, Shimada A, Kawaguchi Y, Naruse K, Morishita S, Koga A, Takeda H.
    • Journal Title

      Nature Communications

      Volume: 8 Pages: 551-551

    • DOI

      10.1038/s41467-017-00527-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel GBEI mutation in a Japanese family with adult polyglucosan body disease2017

    • Author(s)
      Harigaya Y, Matsukawa T, Fujita Y, Mizushima K, Ishiura H, Mitsui J, Morishita S, Shoji M, Ikeda Y, Tsuji S.
    • Journal Title

      Neurology Genetics

      Volume: 3 Issue: 2

    • DOI

      10.1212/nxg.0000000000000138

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Profiling cancer-related gene mutations in oral squamous cell carcinoma from Japanese patients by targeted amplicon sequencing.2017

    • Author(s)
      Nakagaki T, Tamura M, Kobashi K, Kobashi K, Koyama R, Fukushima H, Ohashi T, Idogawa M, Ogi K, Hiratsuka H, Tokino T, Sasaki Y.
    • Journal Title

      Oncotarget

      Volume: 8 Pages: 59113-59122

    • DOI

      10.18632/oncotarget.19262

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quinone oxidoreductase 2 is involved in haustorium development of the parasitic plant Phtheirospermum japonicum.2017

    • Author(s)
      Ishida JK, Yoshida S, Shirasu K.
    • Journal Title

      Plant Signal Behav

      Volume: 12

    • DOI

      10.1080/15592324.2017.1319029

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish2017

    • Author(s)
      Napo K. M. Cheung, Ryohei Nakamura, Ayako Uno, Masahiko Kumagai, Hiroto S, Fukushima, Shinichi Morishita, Hiroyuki Takeda
    • Journal Title

      PLOS Genetics

      Volume: 13 Issue: 12

    • DOI

      10.1371/journal.pgen.1007123

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a completeset of Allium fistulosum-A. cepa monosomic addition lines2017

    • Author(s)
      Abdelrahman M, El-Sayed M, Sato S, Hirakawa H, Ito SI, Tanaka K, Mine Y, Sugiyama N, Suzuki Y, Yamauchi N, Shigyo M.
    • Journal Title

      PLoS One

      Volume: 12 Issue: 8

    • DOI

      10.1371/journal.pone.0181784

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] DEclust : A statistical approach for obtaining differential expression profiles of multiple conditions2017

    • Author(s)
      Aoto Y, Hachiya T, Okumura K, Hase S, Sato K, Wakabayashi Y, and Sakakibara Y.
    • Journal Title

      PLoS One

      Volume: 12 (11)

    • DOI

      10.1371/journal.pone.0188285

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Assessment of the quality of DNA from various formalin-fixed paraffin-embedded (FFPE) tissues and the use of this DNA for next-generation sequencing (NGS) with no artifactual mutation.2017

    • Author(s)
      Einaga N, Yoshida A, Noda H, Suemitsu M, Nakayama Y, Sakurada A, Kawaji Y, Yamaguchi H, Sasaki Y, Tokino T, Esumi M.
    • Journal Title

      PLoS One

      Volume: 12

    • DOI

      10.1371/journal.pone.0176280

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Inter-species hormonal control of host root morphology by parasitic plants2017

    • Author(s)
      Spallek, T., Melnyk, C. W., Wakatake, T., Zhang, J., Sakamoto, Y., Kiba, T., Yoshida, S., Matsunaga, S., Sakakibara, H., Shirasu, K.
    • Journal Title

      PNAS

      Volume: 印刷中 Pages: 5283-5288

    • DOI

      10.1073/pnas.1619078114

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Multiple common and rare variants of ABCG2 cause gout.2017

    • Author(s)
      Higashino Toshihide、Takada Tappei、Nakaoka Hirofumi、Toyoda Yu、Stiburkova Blanka、Miyata Hiroshi、Ikebuchi Yuki、Nakashima Hiroshi、Shimizu Seiko、Kawaguchi Makoto、Sakiyama Masayuki、Nakayama Akiyoshi、Akashi Airi、Tanahashi Yuki、Kawamura Yusuke、Nakamura Takahiro、Wakai Kenji、Hosomichi Kazuyoshi 他
    • Journal Title

      RMD Open

      Volume: 3

    • DOI

      10.1136/rmdopen-2017-000464

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita.2017

    • Author(s)
      Yamazaki T, Ichihara K, Suzuki R, Oshima K, Miyamura S, Kuwano K, Toyoda A, Suzuki Y, Sugano S, Hattori M, Kawano S.
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 11679-11679

    • DOI

      10.1038/s41598-017-11677-0

    • NAID

      120006380559

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq.2017

    • Author(s)
      Li B, Qing T, Zhu J, Wen Z, Yu Y, Fukumura R, Zheng Y, Gondo Y, Shi L.
    • Journal Title

      Scientific Reports

      Volume: 7 Pages: 4200-4200

    • DOI

      10.1038/s41598-017-04520-z

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex2017

    • Author(s)
      Kanda, N., Ichikawa, M., Ono, A., Toyoda, A., Fujiyama, A., Abe, J., Tsuchikane, Y., Nishiyama, T., Sekimoto, H.
    • Journal Title

      Scientific Reports

      Volume: 7 Pages: 17873-17873

    • DOI

      10.1038/s41598-017-18251-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Serotyping dengue virus with isothermal amplification and a portable sequencer.2017

    • Author(s)
      Yamagishi Junya、Runtuwene Lucky R.、Hayashida Kyoko、Mongan Arthur E.、Thi Lan Anh Nguyen、Thuy Linh Nguyen、Nhat Cam Nguyen、Limkittikul Kriengsak、Sirivichayakul Chukiat、Sathirapongsasuti Nuankanya、Frith Martin、Makalowski Wojciech、Eshita Yuki、Sugano Sumio、Suzuki Yutaka
    • Journal Title

      Scientific Reports

      Volume: 7 Pages: 3510-3510

    • DOI

      10.1038/s41598-017-03734-5

    • NAID

      120006337766

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Direct estimation of de novo mutation rates in a chimpanzee parent-offspring trio by ultra-deep whole genome sequencing2017

    • Author(s)
      Tatsumoto S, Go Y, Fukuta K, Noguchi H, Hayakawa T, Tomonaga M, Hirai H, Matsuzawa T, Agata K, Fujiyama A
    • Journal Title

      Scientific Reports

      Volume: 7 Pages: 13561-13561

    • DOI

      10.1038/s41598-017-13919-7

    • NAID

      120006358802

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Independent effects of ADH1B and ALDH2 common dysfunctional variants on gout risk.2017

    • Author(s)
      Sakiyama M, Matsuo H, Akashi A, Shimizu S, Higashino T, Kawaguchi M, Nakayama A, Naito M, Kawai S, Nakashima H, Sakurai Y, Ichida K, Shimizu T, Ooyama H, Shinomiya N.
    • Journal Title

      Sci Rep.

      Volume: 7 Pages: 2500-2500

    • DOI

      10.1038/s41598-017-02528-z

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regnase-1 and Roquin Nonredundantly Regulate Thl Differentiation Cansing Cardiac Inflammation and Fibrosis.2017

    • Author(s)
      Cui, X., Mino, T., Yoshinaga, M., Nakatsuka, Y., Hia, F., Yamasoba, D., Tsujimura, T., Tomonaga, K., Suzuki, Y., Uehata, T., Takeuchi, O.
    • Journal Title

      The Journal of Immunology

      Volume: 199 Issue: 12 Pages: 4066-4077

    • DOI

      10.4049/jimmunol.1701211

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An emerging model organism Caenorhabditis elegans for alternative pre-mRNA processing in vivo.2017

    • Author(s)
      Shotaro Wani, Hidehito Kuroyanagi
    • Journal Title

      Wiley Interdiscip Rev RNA

      Volume: 印刷中

    • DOI

      10.1002/wrna.1428

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A Trichosporonales genome tree based on 27 haploid and three evolutionarily.2017

    • Author(s)
      Masako Takashima, Sira Sriswasdi, Ri-ichiroh Manabe, Moriya Ohkuma, Takashi Sugita, and Wataru Iwasaki.
    • Journal Title

      Yeast

      Volume: 35 Pages: 99-111

    • DOI

      10.1002/yea.3284

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A sodium binding system alleviates acute salt stress during seawater acclimation in eels.2017

    • Author(s)
      Marty Kwok Shing Wong, Takehiro Tsukada, Nobuhiro Ogawa, Supriya Pipil, Haruka Ozaki, Yutaka Suzuki, Wataru Iwasaki, and Yoshio Takei.
    • Journal Title

      Zoological Letters

      Volume: 3 Pages: 22-22

    • DOI

      10.1186/s40851-017-0081-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 神経幹細胞の運命制御におけるIncRNAの役割2017

    • Author(s)
      木下隆太、岸雄介、後藤由季子
    • Journal Title

      医薬ジャーナル, Clinical Calcium

      Volume: 27 Issue: 6

    • Related Report
      2017 Annual Research Report
  • [Journal Article] 変異蓄積モデルを利用した生殖系列変異の後世代影響の解析2017

    • Author(s)
      内村有邦、樋口真弓、八木健
    • Journal Title

      放射線生物研究

      Volume: 52 Issue: 4 Pages: 402-415

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive genetic exploration of selective tooth agenesis of mandibular incisors by exome sequencing.2017

    • Author(s)
      Yamaguchi T, Hosomichi K, Yano K, Kim YI, Nakaoka H, Kimura R, Otsuka H, Nonaka N, Haga S, Takahashi M, Shirota T, Kikkawa Y, Yamada A, Kamijo R, Park SB, Nakamura M, Maki K, Inoue I.
    • Journal Title

      Human Genom Variation

      Volume: 印刷中 Pages: 1005-1005

    • DOI

      10.1038/hgv.2017.5

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Clinical implications of SCN1A missense and truncation variants in a large Japanese cohort with Dravet syndrome.2017

    • Author(s)
      Ishii A, Watkins JC, Chen D, Hirose S, Hammer MF.
    • Journal Title

      Epilepsia.

      Volume: 58 Issue: 2 Pages: 282-290

    • DOI

      10.1111/epi.13639

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A de novo missense mutation of GABRB2 causes early myoclonic encephalopathy.2017

    • Author(s)
      Ishii A, Kang JQ, Schornak CC, Hernandez CC, Shen W, Watkins JC, Macdonald RL, Hirose S.
    • Journal Title

      J Med Genet.

      Volume: 54 Issue: 3 Pages: 202-11

    • DOI

      10.1136/jmedgenet-2016-104083

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Comprehensive microbiome analysis of tonsillar crypts in IgA nephropathy.2017

    • Author(s)
      Watanabe H, Goto S, Mori H, Higashi K, Hosomichi K, Takanashi N, Aizawa N, Yamada T, Inoue I, Kurokawa K, Narita I.
    • Journal Title

      Nephrol Dial Transplant.

      Volume: in press Pages: 2072-2079

    • DOI

      10.1093/ndt/gfw343

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites.2017

    • Author(s)
      Yonezawa T, Segawa T, Mori H, Campos PF, Hongoh Y, Endo H, Akiyoshi A, Manabe M, Kohno N, Nishida S, Wu J, Jin H, Kishino H, Kurokawa K, Yoshifumi N, Tanabe H, Mukoyama H, Yoshida K, Rasoamiaramanana A, Yamagishi S, Hayashi Y, Yoshida A, Koike H, Akishinonomiya F, Willerslev E, Hasegawa M.
    • Journal Title

      Current Biology

      Volume: 27 Issue: 1 Pages: 1-10

    • DOI

      10.1016/j.cub.2016.10.029

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm.2017

    • Author(s)
      Hideki Terajima, Hikari Yoshitane, Haruka Ozaki, Yutaka Suzuki, Shigeki Shimba, Shinya Kuroda, Wataru Iwasaki, and Yoshitaka Fukada.
    • Journal Title

      Nature Genetics

      Volume: 7 Pages: 12926-12926

    • DOI

      10.1038/ng.3731

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Rapid and cost effective high-throughput sequencing for identification of germline mutation of BRCA1 and BRCA22017

    • Author(s)
      Ahmadloo S, Nakaoka H, Hayano T, Hosomichi K, You H, Utsuno E, Sangai T, Nishimura M, Matsushita K, Hata A, Nomura F, Inoue I.
    • Journal Title

      J Hum Genet

      Volume: 印刷中 Pages: 561-567

    • DOI

      10.1038/jhg.2017.5

    • NAID

      40021210379

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genetic polymorphisms in Plasmodium falciparum chloroquine resistance genes, pfcrt and pfmdr1, in North Sulawesi, Indonesia2017

    • Author(s)
      Patrick Reteng, Visia Vrisca, Inka Sukarno, Ilham Habib Djarkoni, Jane Angela Kalangi, George Eduardo Jacobs, Lucky Ronald Runtuwene, Yuki Eshita, Ryuichiro Maeda, Yutaka Suzuki, Arthur Elia Mongan, Sarah Maria Warouw, Junya Yamagishi and Josef Tuda.
    • Journal Title

      BMC Res Notes

      Volume: 10 Pages: 147-147

    • DOI

      10.1186/s13104-017-2468-1

    • NAID

      120006473604

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Germline variants of prostate cancer in Japanese families.2017

    • Author(s)
      Hayano T, Matsui H, Ohtake N, Hosomichi K, Suzuki K, Inoue I.
    • Journal Title

      PLOS ONE

      Volume: 印刷中

    • DOI

      10.1371/journal.pone.0164233

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 改正個人情報保護法でゲノム研究はどう変わるか?2017

    • Author(s)
      清水佳奈, 山本奈津子, 川嶋実苗, 片山俊明, 荻島創一
    • Journal Title

      実験医学

      Volume: 35 Issue: 4 Pages: 600-605

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Genome evolution in the allotetraploid frog Xenopus laevis.2016

    • Author(s)
      Session AM, Toyoda A, Suzuki Y, Fujiyama A, Taira M, et al.
    • Journal Title

      Nature

      Volume: 538 Pages: 336-343

    • DOI

      10.1038/nature19840

    • NAID

      120006240046

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A case of succinic semialdehyde dehydrogenase deficiency with status epilepticus and rapid regression.2016

    • Author(s)
      Horino A, Kawawaki H, Fukuoka M, Tsuji H, Hattori Y, Inoue T, Nukui M, Kuki I, Okazaki S, Tomiwa K, Hirose S.
    • Journal Title

      Brain Dev.

      Volume: 38 Issue: 9 Pages: 866-70

    • DOI

      10.1016/j.braindev.2016.03.010

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial Genome Sequences of Four Strains of the Bloom-Forming Raphidophyte Heterosigma akashiw2016

    • Author(s)
      Ogura Y, Nakayama N, Hayashi T, Ueki S.
    • Journal Title

      Genome Announc.

      Volume: 4 Issue: 6

    • DOI

      10.1128/genomea.01288-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of a Phycodnavirus, Heterosigma akashiwo Virus Strain 53.2016

    • Author(s)
      Ogura Y, Hayashi T, Ueki S.
    • Journal Title

      Genome Announc.

      Volume: 4 Issue: 6

    • DOI

      10.1128/genomea.01279-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Klebsiella oxytoca Strain JKo3.2016

    • Author(s)
      Iwase T, Ogura Y, Hayashi T, Mizunoe Y.
    • Journal Title

      Genome Announc.

      Volume: 4 Issue: 6

    • DOI

      10.1128/genomea.01221-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Phylogenetic Analysis of Enteroaggregative Escherichia coli Sequence Type 131.2016

    • Author(s)
      Imuta N, Ooka T, Seto K, Kawahara R, Koriyama T, Kojyo T, Iguchi A, Tokuda K, Kawamura H, Yoshiie K, Ogura Y, Hayashi T, Nishi J.
    • Journal Title

      J Chin Microbiol.

      Volume: 54(8) Issue: 8 Pages: 2128-2134

    • DOI

      10.1128/jcm.00711-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Complete Genome Sequence of Klebsiella pneumoniae YH43.2016

    • Author(s)
      Iwase T, Ogura Y, Hayashi T, Mizunce Y.
    • Journal Title

      Genome Announc.

      Volume: 4 Issue: 2

    • DOI

      10.1128/genomea.00242-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genome sequence and analysis of the Japanese morning glory, Ipomoea nil.2016

    • Author(s)
      Hoshino A, Jayakumar V, Toyoda A, Noguchi H, Itoh T, Seki M, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Sakakibara Y, et al.
    • Journal Title

      Nat Commun,

      Volume: 7 Pages: 132395-132395

    • DOI

      10.1038/ncomms13295

    • NAID

      120005997914

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Control of transcriptional pausing by biased thermal fluctuations on repetitive genomic sequences.2016

    • Author(s)
      Imashimizu M, Afek A, Takahashi H, Lubkowska L, Lukatsky DB.
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 113(47) Issue: 47

    • DOI

      10.1073/pnas.1607760113

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] AgIn : measuring the landscape of CpG methylation ofindividual repetitive elements.2016

    • Author(s)
      Suzuki Y, Korlach J, Turner SW, Tsukahara T, Taniguchi J, Qu W, Ichikawa K, Yoshimura J, Yurino H, Takahashi Y, Mitsui J, Ishiura H, Tsuji S, Takeda H, Morishita S.
    • Journal Title

      Bioinformatics

      Volume: 32(19) Issue: 19 Pages: 2911-2919

    • DOI

      10.1093/bioinformatics/btw360

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Assessing Cell-to-Cell DNA Methylation Variability on Individual Long Reads.2016

    • Author(s)
      Qu W, Tsukahara T, Nakamura R, Yurino H, Hashimoto S, Tsuji S, Takeda H, Morishita S.
    • Journal Title

      Sci Rep.

      Volume: 6 Pages: 21317-21317

    • DOI

      10.1038/srep21317

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Parallel mitogenome sequencing alleviates random rooting effect in phylogeography.2016

    • Author(s)
      Shotaro Hirase, Hirohiko Takeshima, Mutsumi Nishida, and Wataru Iwasaki.
    • Journal Title

      Genome Biology and Evolution

      Volume: - Pages: 1267-1278

    • DOI

      10.1093/gbe/evw063

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structural mechanism for light-driven transport by a new type of chloride ion pump, Nonlabens marinus rhodopsin-3.2016

    • Author(s)
      Toshiaki Hosaka, Susumu Yoshizawa, Yu Nakajima, Noboru Ohsawa, Masakatsu Hato, Edward F, DeLong, Kazuhiro Kogure, Shigeyuki Yokoyama, Tomomi Kimura-Someya, Wataru Iwasaki, and Mikako Shirouzu.
    • Journal Title

      Journal of Biological Chemistry

      Volume: 291 Pages: 17488-17495

    • DOI

      10.1074/jbc.m116.728220

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Metagenomics and bioinformatics in microbial ecology : Current status and beyond.2016

    • Author(s)
      Satoshi Hiraoka, Ching-chia Yang, and Wataru Iwasaki.
    • Journal Title

      Microbes and Environments

      Volume: 31 Pages: 204-212

    • NAID

      130005265061

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Flexible selection of diversified Na+/K+ATPase α-subunit isoforms for osmoregulation in teleosts.2016

    • Author(s)
      Marty Kwok-Shing Wong, Supriya Pipil, Haruka Ozaki, Yutaka Suzuki, Wataru Iwasaki, and Yoshio Takei.
    • Journal Title

      Zoological Letters

      Volume: 2 Pages: 15-15

    • DOI

      10.1186/s40851-016-0050-7

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Global deceleration of gene evolution following recent genome hybridizations in fungi.2016

    • Author(s)
      Sira Sriswasdi, Masako Takashima, Ri-ichiroh Manabe, Moriya Ohkuma, Takashi Sugita, and Wataru Iwasaki.
    • Journal Title

      Genome Research

      Volume: 26 Pages: 1081-1090

    • DOI

      10.1101/gr.205948.116

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Allelic imbalance in regulation of ANRIL through chromatin interaction at 9p21 endometriosis risk locus.2016

    • Author(s)
      Nakaoka H, Gurumurthy A, Hayano T, Ahmadloo S, Omer WH, Yoshihara K, Yamamoto A, Kurose K, Enomoto T, Akira S, Hosomichi K, Inoue I.
    • Journal Title

      PLOS Genet

      Volume: 1 Issue: 4 Pages: 1-23

    • DOI

      10.1371/journal.pgen.1005893

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Rtools : a web server for various secondary structural analyses on single RNA sequences.2016

    • Author(s)
      Michiaki Hamada, Yukiteru Ono, Hisanori Kiryu, Kengo Sato, Yuki Kato, Tsukasa Fukunaga, Ryota Mori, Kiyoshi Asai.
    • Journal Title

      Nucleic Acids Res

      Volume: 44

    • DOI

      10.1093/nar/gkw337

    • NAID

      120006346257

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Improved Aocuracy in RNA-Protein Rigid Body Docking by Incorporating Force Field for Molecular Dynamics Simulation into the Scoring Function.2016

    • Author(s)
      Junichi Iwakiri, Michiaki Hamada, Kiyoshi Asai, Tomoshi Kameda.
    • Journal Title

      J. Chem Theory Comput.

      Volume: 12(9) Issue: 9 Pages: 4688-4697

    • DOI

      10.1021/acs.jctc.6b00254

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] DFAST and DAGA : web-based integrated genome annotation tools and resources2016

    • Author(s)
      Tanizawa Y, Fujisawa T, Kamimuma E, Nakamura Y, Arita M.
    • Journal Title

      Bioscience of Microbiota, Food and Health

      Volume: 35 Issue: 4 Pages: 173-184

    • DOI

      10.12938/bmfh.16-003

    • NAID

      130005250038

    • ISSN
      2186-3342
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing.2016

    • Author(s)
      Tsuchiya M, Amano K, Abe M, Seki M, Hase S, Sato K, Sakakibara Y.
    • Journal Title

      Bioinformatics

      Volume: 32 Issue: 12

    • DOI

      10.1093/bioinformatics/btw273

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Challenges raised by gene editing.2016

    • Author(s)
      Kazuto Kato.
    • Journal Title

      Issues in Science and Technoogy,

      Volume: XXXⅡ Issue: 4

    • Related Report
      2016 Annual Research Report
  • [Journal Article] ヒトゲノムデータの保護と利用に向けた仕組みづくり2016

    • Author(s)
      加藤和人, 山本奈津子
    • Journal Title

      実験医学

      Volume: 34 Issue: 16 Pages: 2670-2671

    • Related Report
      2016 Annual Research Report
  • [Presentation] Role of Arc for recent and remote memory2019

    • Author(s)
      Okuno H
    • Organizer
      2019 WCNP Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 'Life Science Alliance Journal Lecture' REGULATION OF NEOCORTICAL NEURAL STEM/PROGENITOR CELL FATE DURING DEVELOPMENT2019

    • Author(s)
      Yukiko Gotoh
    • Organizer
      2nd Neurogenesis Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The neuronal circuitry for prey capture in zebrafish : from visual stimuli to the hypothalamic feeding center2019

    • Author(s)
      Koichi Kawakami
    • Organizer
      9th Federation of the Asian and Oceanian Physiological Societies Congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Trials of targeted gene disruption of the plant mitochondrial genomes by mitoTALEN.2019

    • Author(s)
      有村慎一
    • Organizer
      Gordon Research Conference, Chloroplast Biotechnology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] TARGETED DISRUPTION OF MITOCHONDRIAL GENES ASSOCIATED WITH CYTOPLASMIC MALE STERILITY IN RICE AND RAPESEED2019

    • Author(s)
      有村慎一
    • Organizer
      International conference of Plant mitochondria
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] From the era Aristotle to modern science : How animals can tell the season2019

    • Author(s)
      Masayuki Iigo
    • Organizer
      International Workshop on Bioimaging (IWBI2019)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Physiological effects of Arabidopsis deadenylases, AtCCR4a/b, components of the AtCCR4-NOT complex.2019

    • Author(s)
      千葉由佳子
    • Organizer
      Post-transcriptional gene regulation in plants
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Quality control of protein synthesis by peptidy1-tRNA drop off in the early elongation stage2019

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      Ribosome Structure and Function 2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamic regulation of RNA modification in health and disease2019

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      RNA Editing, Next-Generation Epitranscriptomics in Health and Disease (Gordon Research Conference)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RNA modification, a chemical diversity for biological function2019

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      The 20th Takeda Science Foundation Symposium on Bioscience “RNA Neobiology”
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Helicobacter pylori virulence and gastric cancer pathogenesis : current knoeledge.2019

    • Author(s)
      Yoshio Yamaoka
    • Organizer
      The 27th Annual Meeting of the Korean College of Helicobacter and Upper Gastrointestinal Research and the 16th Japan-Korea Joint Symposium on Helicobacter Research
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A potential biomarker panel to distinguish gastric cancer from duodenal ulcer : results from GWAS in East Asian-type Helicobacter pylori.2019

    • Author(s)
      Vo Phuoc Tuan, Kouji Yahara, Yoshio Yamaoka
    • Organizer
      The 27th Annual Meeting of the Korean College of Helicobacter and Upper Gastrointestinal Research and the 16th Japan-Korea Joint Symposium on Helicobacter Research
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nutritional regulation of C. elegans development2019

    • Author(s)
      Masamitsu Fukuyama and Toshiaki Katada
    • Organizer
      The 9th Federation of the Asian and Oceanian Physiological Society Congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamic regulation of RNA modification in health and disease2019

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      Translation Machinery in Health and Disease (Gordon Research Conference)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Gastritis : Past, current and future treatment.2019

    • Author(s)
      Yoshio Yamaoka
    • Organizer
      World Class Professor Program, Surabaya, Indonesia
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Toward repositioning Allium vegetable crops as global commodities : Opportunities and challenges for future application of omics and phytomedomics platforms to crop improvement2019

    • Author(s)
      Masayoshi Shigyo
    • Organizer
      XXX. INTERNATIONAL HORTICULTURAL CONGRESS
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Gene expression analyses of pituitary and renal tissues in pufferfish acclimated to brackish water and seawater.2019

    • Author(s)
      Keiichiro Fujimori, Gaku Mizutani, Yutaka Suzuki, Akira Kato
    • Organizer
      「先進ゲノム支援」国際シンポジウム -Frontiers of Genome Science-
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Sleeping beauty tranposon insertional mutagenesis screen of uerine leiomyosarcoma idetified cancer genes driving sarcomagenesis2019

    • Author(s)
      Michiko Kodama
    • Organizer
      11th AACR-JCA joint conference on breakthroughs in cancer research
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Amplicon-based targeted sequencing identifies promising markers in oral squamous cell carcinoma from Japanese patients.2019

    • Author(s)
      Takashi Tokino, Takafumi Nakagaki, Masashi Idogawa, Yasushi Sasaki.
    • Organizer
      11th AACR-JCA Joint International Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The novel p53 family target BRMS1L suppresses cancer cell invasion and migration2019

    • Author(s)
      Sasaki Y, Koyama R, Maruyama R, Tamura M, Idogawa M, Suzuki H, Tokino T
    • Organizer
      11th AACR-JCA Joint International Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DOT1L inhibition blocks multiple myeloma cell proliferation by suppressing IRF4-MYC signaling.2019

    • Author(s)
      Ishiguro K, Kitajima H, Niinuma T, Ishida T, Maruyama R, Ikeda H, Yamamoto E, Kai M, Sasaki Y, Tokino T, Nakase H, Suzuki H.
    • Organizer
      11th AACR-JCA Joint International Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Epigenetic regulation of miR-200b is associated with cisplatin resistance in bladder cancer.2019

    • Author(s)
      Shindo T, Niinuma T, Kitajima H, Kai M, Tokino T, Masumori N, Suzuki H.
    • Organizer
      11th AACR-JCA Joint International Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Diversified transcriptional regulation of secondary metabolic gene clusters in closely related Aspergillus species.2019

    • Author(s)
      Takahashi H, Umemura M, Ninomiya A, Shimizu M, Kusuya Y, Urayama S, Watanabe A, Kamei K, Yaguchi T, Hagiwara D.
    • Organizer
      30th Fungal Genetics Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] BRMSIL, a metastatic suppressor gene is transcriptionally regulated by p53.2019

    • Author(s)
      Takashi Tokino, Ryota Koyama, Masashi Idogawa, Yasushi Sasaki.
    • Organizer
      American Association of Cancer Research (AACR) Annual Meeting 2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Targeted exome sequencing profiles genetic alterations in oral squamous cell carcinoma from Japanese patients.2019

    • Author(s)
      Sasaki Y, Nakagaki T, Tamura M, Fukushima F, Ikeda H, Koyama R, Idogawa M, Tokino T
    • Organizer
      American Association of Cancer Research (AACR) annual meeting 2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] VITCOMIC2 and MicrobeDB. jp : Analyzing and comparing microbial community sequencing data2019

    • Author(s)
      Mori H, Kurokawa K.
    • Organizer
      Frontiers of Genome Science 2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ADAR1-mediated RNA editing is required for thymic self-tolerance and inhibition of autoimmunity2019

    • Author(s)
      Nakahama Taisuke
    • Organizer
      Gordon Research Seminar for RNA editing(イタリア)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effects of Space Stay on Skeletal Muscle2019

    • Author(s)
      Atsuko Sehara
    • Organizer
      International Symposium on LIVING IN SPACE 2019 From basic biology to the MOON, MARS and beyond
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The identification of KLF5 enhancer region in colorectal cancer2019

    • Author(s)
      Yuhki Yokoyama, Takashi Takeda, Kumi Kitagawa, Daisuke Okuzaki, Toshitsugu Fujita, Hodaka Fujii, Hirofumi Yamamoto
    • Organizer
      KEYSTONE SYMPOSIA 3D Genome : Gene Regulation and Disease
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] MCM10 maintains breast cancer stem-like cells through encouraging rapid response to DNA replication stress2019

    • Author(s)
      村山貴彦
    • Organizer
      Keystone symposia DNA replication and genome instability : From mechanisms to disease
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The nutritional basis of Drosophila associated microbes for larval growth2019

    • Author(s)
      牟禮あゆみ
    • Organizer
      Kyoto University the 17th International Student Seminar
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Database for the Chromosome-Level Assembly for a Liverwort Marchantia polymorpha2019

    • Author(s)
      Nakamura, Y., Tanizawa, Y., Mochizuki, T., et al.
    • Organizer
      Plant and Animal Genomics 2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Draft Genome Sequence of Bitter Gourd (Momordica charantia) as Vegetable Crop and Medicinal Plant2019

    • Author(s)
      Hideo Matsumura
    • Organizer
      Plant&Animal Genome XXVII
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Mutational Profiling of Japanese Cervical Cancer Patients Treated with Radiotherapy2019

    • Author(s)
      Yuya Yoshimoto, Takahiro Oike, Yasushi Sasaki, Endang Nuryadi, Kazutoshi Murata, Takuya Kaminuma, Daisuke Irie, Daijiro Kobayashi, Tatsuya Ohno, Takashi Tokino, Takashi Nakano
    • Organizer
      The 9th Annual Meeting of The International Society of Radiation Neurobiology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The evolution of mating type locus-like regions in the homothallic species Volvox africanus2019

    • Author(s)
      Yamamoto, K., Hamaji, T., Kawai-Toyooka, H., Noguchi, H., Minakuchi, Y., Toyoda, A., and Nozaki, H.
    • Organizer
      The International symposium organized by “Platform for Advanced Genome Science” -FRONTIERS OF GENOME SCIENCE-
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Patient-specific circulating tumor DNA monitoring using esophageal squamous cell cancer gene panel and digital PCR2019

    • Author(s)
      Takeshi Iwaya, Fumitaka Endo, Yasushi Sasaki, Noriyuki Sasaki, Mizunori Yaegashi, Yuji Akiyama, Akira Sasaki, Mari Masuda, Tesshi Yamada, Takashi Tokino, Satoshi Nishizuka
    • Organizer
      アメリカ癌学会
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Marker development for resistance of strawberry against Colletotrichum gloeosporioides.2019

    • Author(s)
      金相完
    • Organizer
      先進ゲノム国際シンポジウム
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 病原真菌アスペルギルスフミガタスの表現型解析および遺伝型解析2019

    • Author(s)
      高橋弘喜
    • Organizer
      第2回感染症診断と治療におけるゲノム解析
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 自然免疫応答を制御する長鎖 ノンコーディングRNA に関する研究2019

    • Author(s)
      秋光信佳
    • Organizer
      先端モデル動物支援プラットフォーム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 放射線によるがん細胞の免疫応答2019

    • Author(s)
      影山 俊一郎
    • Organizer
      第78回癌学会学術総会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] in vivo実験的進化系を利用した細菌の病原性システムの解明2019

    • Author(s)
      垣内 力
    • Organizer
      第92回日本細菌学会総会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] キセキツイ動物モデルと蛋白質の機能2019

    • Author(s)
      大森義裕
    • Organizer
      蛋白質研究所コロキウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 内生糸状菌との相互作用を介したアブラナ科植物の生存戦略2019

    • Author(s)
      晝間敬
    • Organizer
      日本農芸学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 長鎖ノンコーディングRNAによるストレス応答制御2019

    • Author(s)
      秋光信佳
    • Organizer
      北陸RNAクラブ
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 健康に暮らす社会に向けた宇宙の活用 -基礎研究や民間の取組み2019

    • Author(s)
      瀬原淳子
    • Organizer
      国際宇宙ステーション「きぼう」利用シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 病原真菌Aspergillus fumigatusの環境応答能の解析2019

    • Author(s)
      髙橋弘喜
    • Organizer
      第101回日本細菌学会関東支部総会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 10 Simple Reasons Why Graph Genome is Needed2019

    • Author(s)
      笠原 雅弘
    • Organizer
      第10回Genome Graph研究会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 腸内細菌叢と循環器疾患~性差からの考察を加えて~2019

    • Author(s)
      山下 智也、平田 健一
    • Organizer
      第12回日本性差医学・医療学会学術集会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] データ駆動アプローチによるゲノム微生物学の拡張2019

    • Author(s)
      岩崎渉
    • Organizer
      第13回日本ゲノム微生物学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 地球規模海洋オミクスデータに基づく巨大ウイルスと生物炭素ポンプの関係の解明2019

    • Author(s)
      緒方博之
    • Organizer
      第2回感染症診断と治療におけるゲノム解析
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 神経幹細胞の増殖期からニューロン分化期への転換2019

    • Author(s)
      岸雄介
    • Organizer
      第346回熊本大学発生研セミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 無変態昆虫マダラシミにおけるゲノム編集の現状2019

    • Author(s)
      大出高弘
    • Organizer
      第63回日本応用動物昆虫学会大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 非モデル昆虫の新奇形質 : 斑紋と角の遺伝的基盤2019

    • Author(s)
      新美輝幸・安藤俊哉・森田慎一
    • Organizer
      第66回日本生態学会大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 次世代シーケンサを用いた病原細菌におけるゲノム解析の進展2019

    • Author(s)
      林哲也
    • Organizer
      日本ゲノム微生物学会2019
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 次世代シーケンサを用いた病原細菌におけるゲノム解析の進展2019

    • Author(s)
      林哲也
    • Organizer
      日本農芸化学会2019
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 腸内細菌と宿主のクロストークを媒介するエクソソーム2019

    • Author(s)
      園山 慶
    • Organizer
      日本農芸化学会2019年度大会シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] RNAi法で探る非モデル昆虫の形作りの仕組み.2019

    • Author(s)
      新美輝幸・安藤俊哉・森田慎一
    • Organizer
      日本農薬学会第44回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 進化的な保存性の評価に基づく肺炎球菌の病原因子の探索2019

    • Author(s)
      山口雅也, 後藤花奈, 竹村 萌, 広瀬雄二郎, 住友倫子, 中田匡宣, 川端重忠
    • Organizer
      第92回 日本細菌学会総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Rhizobium vitis VAR03-1株によるブドウ根頭がんしゅ病の抑制機構の解析2019

    • Author(s)
      石井智也・齊藤晶・渡邉恵・松井英譲・山本幹博・一瀬勇規・豊田和弘・川口章・能年義輝
    • Organizer
      H31年度日本植物病理学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 神経幹細胞におけるbHLH型転写因子のダイナミックな発現制御機構2019

    • Author(s)
      山田 真弓
    • Organizer
      NEURO2019
    • Related Report
      2018 Annual Research Report
  • [Presentation] DIpartite : a Tool for Detecting Bipartite Motif by Taking into Account Base Interdependencies2019

    • Author(s)
      Vahed M, Ishihara j, Takahashi H.
    • Organizer
      The 7th Global Network Forum on Infection and Immunity
    • Related Report
      2018 Annual Research Report
  • [Presentation] Towards spatial and temporal control of gene knockout : transgenic approaches2019

    • Author(s)
      Koichi Kawakami
    • Organizer
      The 8th Strategic Conference of Zebrafish Investigators
    • Related Report
      2018 Annual Research Report
  • [Presentation] DIpartite : a Tool for Detecting Bipartite Motif by Taking into Account Base Interdependencies2019

    • Author(s)
      Ishihara J, Vahed M, Takahashi H.
    • Organizer
      The International symposium organized by “Platform for Advanced Genome Science” -FRONTIERS OF GENOME SCIENCE-
    • Related Report
      2018 Annual Research Report
  • [Presentation] バルクシーケンスによるビワがんしゅ病抵抗性遺伝子(Pse-a)領域の推定2019

    • Author(s)
      松隈公孝・石本慶一郎・稗圃直史・永野幸生・伊藤武彦・奥野未来・豊田敦・永野惇・山本俊哉・福田伸二
    • Organizer
      園芸学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Characterization of heat-responsible novel nuclear body containing MALAT12019

    • Author(s)
      秋光信佳
    • Organizer
      染色体WS
    • Related Report
      2018 Annual Research Report
  • [Presentation] Helicobacter cinaedi の DNA 修飾関連遺伝子ノックアウト株における遺伝子発現変化2019

    • Author(s)
      林原絵美子, 豊田 敦, 森 茂太郎, 金 玄, 柴山 恵吾
    • Organizer
      第92回日本細菌学会総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ゼニゴケMarchantiapolymorphaと珪藻Nitzschiasp. NIES4239のゲノム解析2019

    • Author(s)
      望月孝子、谷沢靖洋、中村保一, 他
    • Organizer
      第60回植物生理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ニガウリにおける染色体レベルの全ゲノム配列情報整備へ向けて2019

    • Author(s)
      松村英生、太郎良和彦、谷合直樹、宮城徳道、高木宏樹、浦崎直也
    • Organizer
      日本育種学会第135回講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 野生イネの持つカリウム欠乏耐性遺伝子の同定2019

    • Author(s)
      大森 良弘, 藤原 徹
    • Organizer
      日本育種学会第135回講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ショウジョウバエsmall ovary(sov)によるトランスポゾン抑制機構2019

    • Author(s)
      猪谷紗来、三好啓太、齋藤都暁
    • Organizer
      日本遺伝学会春季分科会
    • Related Report
      2018 Annual Research Report
  • [Presentation] mitoTALENによるミトコンドリアゲノム編集 : シロイヌナズナATP6の遺伝子破壊とmitoTALEN技術の改良2019

    • Author(s)
      菅谷 元, 鶴田 遊, 柳瀬 俊吾, 亘 悠太, 堤 伸浩, 有村 慎一
    • Organizer
      日本育種学会135回講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 日本産短日性ウキクサにおける限界日長変化に伴う概日時計周期の変化2019

    • Author(s)
      村中智明、小山時隆、工藤洋
    • Organizer
      日本生態学会第66回全国大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 微生物ゲノムアノテーションツールDFASTの開発2019

    • Author(s)
      谷沢靖洋、藤澤貴智、有田正規、中村保一
    • Organizer
      第13回ゲノム微生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Endophyte-mediated control of fungal pathogenesis in Arabidopsis thaliana2019

    • Author(s)
      Kuldanai Pathompitaknukul
    • Organizer
      平成31年日本植物病理学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ホウレンソウY染色体雄特異的領域の座乗遺伝子同定および進化年代推定2019

    • Author(s)
      岡崎 洋助, 平川 英樹, 鈴木 穣, 小野寺 康之
    • Organizer
      園芸学会 平成31年度春季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] トウガラシ(Capsicum chinense)の高温期における花粉発芽率の改善に関わる候補遺伝子領域2019

    • Author(s)
      山崎 彬、白澤健太、細川宗孝
    • Organizer
      園芸学会平成31年度春季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] トウガラシの葉が持つ強力なRNase活性を制御する遺伝子座の特性2019

    • Author(s)
      梅林綾香・安井康夫・白澤健太・細川宗孝
    • Organizer
      園芸学会平成31年度春季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Allium cepa全ゲノム解析の進捗と今後の課題2019

    • Author(s)
      執行正義
    • Organizer
      園芸学会平成31年度春季大会 第24回ネギ類研究小集会
    • Related Report
      2018 Annual Research Report
  • [Presentation] トンボの「性スペクトラム」に関わる紫外線反射の分子機構.2019

    • Author(s)
      二橋亮
    • Organizer
      性スペクトラムー連続する表現型としての雌雄 第1回 若手研究会.
    • Related Report
      2018 Annual Research Report
  • [Presentation] トンボの色覚および紫外線反射の分子基盤.2019

    • Author(s)
      二橋亮
    • Organizer
      生物資源ゲノム解析拠点 研究報告会.
    • Related Report
      2018 Annual Research Report
  • [Presentation] アサガオの刷毛目絞とエピゲノム解析2019

    • Author(s)
      星野敦, 森田裕将, 長岐清孝
    • Organizer
      第10回アサガオ研究集会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 神経幹細胞分化における染色体接着因子コヒーシンの機能解析2019

    • Author(s)
      藤田幸、山下俊英
    • Organizer
      第124回日本解剖学会総会・全国学術集会
    • Related Report
      2018 Annual Research Report
  • [Presentation] エピジェネティックな機構を介した精子発生制御メカニズムの解析2019

    • Author(s)
      小林裕貴、尾野道男、溝口敬太、夏目幸治、富澤信一、河越龍方、水木信久、小倉淳郎、大保和之
    • Organizer
      第124回日本解剖学会総会全国学術集会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ADAR1-mediated RNA editing is required for thymic self-tolerance and prevention of autoimmunity2019

    • Author(s)
      Nakahama Taisuke
    • Organizer
      第20回武田科学振興財団生命科学シンポジウム「RNAネオバイオロジー」
    • Related Report
      2018 Annual Research Report
  • [Presentation] 4C解析による核内セントロメア構造 分子基盤とその役割の解明2019

    • Author(s)
      西村浩平
    • Organizer
      第36回 染色体ワークショップ
    • Related Report
      2018 Annual Research Report
  • [Presentation] The nutritional basis of Drosophila associated microbes for larval growth2019

    • Author(s)
      牟禮あゆみ
    • Organizer
      第3回京都生体質量分析研究会シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] アサガオの刷毛目絞を司るエピジェネティックな遺伝子発現御2019

    • Author(s)
      星野敦, 森田裕将, 長岐清孝
    • Organizer
      第60回日本植物生理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 生理生態学研究のための植物の蒸散・吸水過程のシンプルモデル2019

    • Author(s)
      桑形恒男, 伊川浩樹
    • Organizer
      第60回日本植物生理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ゼニゴケMarchantia polymorphaと珪藻Nitzschia sp. NIES4239のゲノム解析2019

    • Author(s)
      望月孝子, 谷澤靖洋, 山岡尚平, 西浜竜一, 金澤建彦, 上田貴志, 大和勝幸, 河内孝之, 谷藤吾朗, 神川龍馬, 中村 保一
    • Organizer
      第60回日本植物生理学会年会(名古屋)
    • Related Report
      2018 Annual Research Report
  • [Presentation] 腸内共生細菌がつくるカメムシの緑体色2019

    • Author(s)
      森山実、深津武馬
    • Organizer
      第63回二本応用動物昆虫学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 無変態昆虫マダラシミにおける幼若ホルモン関連遺伝子群の発現解析2019

    • Author(s)
      峯村俊儀、大出髙弘、新美輝幸、塩月孝博、大門高明
    • Organizer
      第63回二本応用動物昆虫学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Allopatric, sympatric, and hybrid speciation in a lacustrine medaka species complex2019

    • Author(s)
      Ixchel F. Mandagi, Daniel F. Mokodongan, Koji Mochida, Nobuyuki Inomata, Atsushi J. Nagano, Jun Kitano, Kazunori Yamahira
    • Organizer
      第66回日本生態学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Speciation driven by repeated colonization in a Wallacean ancient lake2019

    • Author(s)
      Sutra Nobu, Junko Kusumi, Atsushi J. Nagano, Masatoshi Matsunami, Ryosuke Kimura, Kazunori Yamahira
    • Organizer
      第66回日本生態学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Gut microbiome, novel therapeutic targets for preventing atherosclerotic cardiovascular diseases2019

    • Author(s)
      山下 智也、吉田 尚史、平田 健一
    • Organizer
      第83回日本循環器学会学術集会
    • Related Report
      2018 Annual Research Report
  • [Presentation] トロポミオシンをコードするlev-11遺伝子の選択的スプライシング制御2019

    • Author(s)
      黒柳秀人
    • Organizer
      東京地区線虫勉強会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 魚類における性染色体のターンオーバー2019

    • Author(s)
      菊池潔
    • Organizer
      東京農業大学生物資源ゲノム解析拠点シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] 有用微生物群の光環境応答メカニズムに関する研究2019

    • Author(s)
      角悟、兼崎友、吉川博文、上田賢志、髙野英晃
    • Organizer
      東京農業大学生物資源ゲノム解析拠点研究報告会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ネパール産ミカヅキモ属の多様性と新規交配群Hの発見2019

    • Author(s)
      小林弘佳、川口也和子、Mangal Man Shakya、土松隆志、関本弘之、土金勇樹
    • Organizer
      日本植物分類学会18回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Volvox属Merrillosphaera節における性染色体領域の拡大2019

    • Author(s)
      山本荷葉子、浜地貴志、豊岡博子、野口英樹、水口洋平、豊田敦、野崎 久義
    • Organizer
      日本藻類学会第43回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] プリ属の性決定領域ゲノム配列比較2019

    • Author(s)
      小山喬・車遥介・菊池潔・森島輝・豊田敦
    • Organizer
      平成31年度 日本水産学会春季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Somatic mutations on cancer-associated genes in endometriosis and normal uterine endometrium2018

    • Author(s)
      Kosuke Yoshihara
    • Organizer
      17th biennial meeting of the international gynecologic cancer society
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Foxr2 promotes formation of CNS-embryonal tumors in a Trp53-deficient background2018

    • Author(s)
      髙祖 秀登
    • Organizer
      19th International Congress of Neuropathology (ICN 2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] How have sex chromosomes become a major sex-determination system in spite of their potential disadvantage?2018

    • Author(s)
      Nozawa, Masafumi
    • Organizer
      2017 UOS-TMU Joint Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Chromatin regulation of neural stem cell fate during neocortical development2018

    • Author(s)
      Yusuke Kishi, Hikaru Eto, Haruhiko Koseki and Yukiko Gotoh
    • Organizer
      2018 Joint Meeting between The Neurodevelopmental Biology Section of The Korean Society for Molecular and Cellular Biology and Japanese Developmental Neuroscientists
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Chromatin regulation of neural stem cell fate during neocortical development.2018

    • Author(s)
      Yusuke Kishi, Hikaru Eto and Yukiko Gotoh
    • Organizer
      2018 Joint Meeting between The Neurodevelopmental Biology Section of The Korean Society for Molecular and Cellular Biology and Japanese Developmental Neuroscientisis
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Correlation analysis of single nucleosome dynamics reveals compact chromation domain organization in living cells.2018

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      2018 Telluride workshop Chromatin Structure and Dynamics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The ectodomain shedding of NRG1 underlies spatial and temporal regulation of synaptogenesis and myelination of developing motor neurons2018

    • Author(s)
      F. Sato, M. Tabuchi, A. Kamezaki, A. Asakawa, K. Kawakami, A. Sehara-Fujisawa
    • Organizer
      22nd Biennial Meeting of the International Society of Developmental Neuroscience
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamic regulation of tRNA modification under physiological and pathological conditions2018

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      27th tRNA conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] GWAS and further genetic analysis of gout2018

    • Author(s)
      Hirotaka Matsuo, Akiyoshi Nakayama, Tappei Takada, Masahiro Nakatochi, Yukinori Okada, Kimiyoshi Ichida
    • Organizer
      2nd APGC Annual Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Chromatin-level regulation of neural stem/progenitor cell fate.2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      2nd IRCN International Symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Non-Helicobacter pylori microbiome in gastric carcinogenesis.2018

    • Author(s)
      Yoshio Yamaoka
    • Organizer
      Asian Pacific Digestive Week (APDW 2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of neural stem/progenitor cell fate during development and in the adult.2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      Bordeaux Cajal School 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of embryonic and adult neural stem cell fate.2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      Cold Spring Harbor (CSH) Asia 2018, Stem Cell Crossroads
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Correlation analysis of single nucleosome dynamics reveals compact chromatin domain organization in living cells.2018

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Colorado Chromatin Meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Requirement of DDX6 medicated P-body formation for the function of NANOS2 In male germ cell differentiation2018

    • Author(s)
      相賀 裕美子
    • Organizer
      COMBIO2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] MOLECULAR DISSECTION OF NANOS-MEDIATED RNA-REGULATION2018

    • Author(s)
      相賀 裕美子
    • Organizer
      CSH-Germ Cells Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Metabolic regulation of tRNA modifications associated with mitochondrial diseases2018

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      EMBO workshop on "Molecular Biology of Mitochondrial Gene Expression" in 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] LEA : a web tool to explore the microbiome universe2018

    • Author(s)
      Higashi K
    • Organizer
      FRONTIERS OF GENOME SCIENCE
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Understanding tandem repeats and methylation with long-read sequencing2018

    • Author(s)
      Shinichi Morishita
    • Organizer
      Genome Biophysics : Integrating Genomics and Biophysics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Centromere Dynamics During Mitotic progression2018

    • Author(s)
      Tatsuo Fukagawa
    • Organizer
      Gordon Research Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The To12 Transposon Technology and Its Application to Genetic Studies in Zebrafish2018

    • Author(s)
      Koichi Kawakami
    • Organizer
      International Joint Conference on Genetics & Medicine
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of embryonic and adult neural stem cell fate2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      International Society for Developmental Neuroscience (ISDN) 2018 in Mara
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Toward understanding ecophysiology of a bloom-forming alga, Heterosigma akashiwo2018

    • Author(s)
      Shoko Ueki
    • Organizer
      International Symposium : “Advances in Environmental Microbiology and Microbial Biotechnology” Universidad de La Frontera
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of neural stem cell and its involvement in brain development.2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      Japan-Asia-NIBR Drug Discovery and Translational Medicine Symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Integrated database for microbe “MicrobeDB. jp”2018

    • Author(s)
      Kurokawa K
    • Organizer
      JSME2018&10thASME
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Genome and Transcriptome Analyses of Striga spp.2018

    • Author(s)
      Satoko Yoshida, Seungill Kim, Eric K, Wafula, Thomas Spallek, Yong-Min Kim, Jaakko Tanskanen, Songkui Cui, Yasunori Ichihashi, Alan H, Schulman, Claude W, dePamphillis, Doil Choi, Ken Shirasu
    • Organizer
      Korea Genome Organization
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Helicobacter pylori : Challenging the present and future.2018

    • Author(s)
      Yoshio Yamaoka
    • Organizer
      Makassar Gastroenterology Hepatology Update 2018 (MAGEHAP2018) & Gastroenterology-Hepatology Update ; Surabaya-Denpasar-Malang-Makassar 14 (SUDEMMA14) Joint conference.
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of neural stem/progenitor cell fate2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      National Chung Kung University (NCKU) Seminar
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of neural stem/progenitor cell fate2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      Neuroscience Program of Academia Sinica (NPAS) Seminar
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The role of CD69 on iNKT cell development in the thymus.2018

    • Author(s)
      Kimura M. Y.
    • Organizer
      NIH Thymus symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of neural stem/progenitor cell fate during neocortical development2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      International Society for Stem Cell Research (ISSCR) 2018 Annual Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Understanding tandem repeats and DNA methylation using SMRT sequencing2018

    • Author(s)
      Shinichi Morishita
    • Organizer
      SMRT Leiden
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] STAT3 : A Key Transcriptional Factor Not Only in Embryo Implantation but also in Endometrial Regeneration2018

    • Author(s)
      Hirota Y, Hiraoka T, Saito-Fujita T, Osuga Y.
    • Organizer
      Society for Reproductive Investigation, 65th Annual Scientific Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of neural progenitor/stem cell fate during development.2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      Stem Cell Dynamics Throughout Life : From Development to the Adult
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Evolution of three independent neo-sex chromosome systems in Drosophila2018

    • Author(s)
      Nozawa, Masafumi
    • Organizer
      Symposium on Evolutionary Genetics and Omics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Space stay of zebrafish2018

    • Author(s)
      Atsuko Sehara
    • Organizer
      The 15th Korea-Japan Joint Seminar on Space Environment Utilization Research
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Helicobacter pylori eradication and Gastric cancer prevention.2018

    • Author(s)
      Yoshio Yamaoka
    • Organizer
      The 2018 International Forum of Helicobacter pylori, Gastrointestinal Microbiota and the Associated diseases.
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular mechanisms underlying color formation in dragonflies.2018

    • Author(s)
      Futahashi Ryo
    • Organizer
      The 28th Annual Meeting of the Japanese Society for Pigment Cell Research.
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RNA modification, a chemical diversity for biological function2018

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      The 2nd Joint Australia-Japan joint RNA meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] H. pylori-related pathogenesis of diffuse-type gastric cancer.2018

    • Author(s)
      Yoshio Yamaoka
    • Organizer
      The 2nd Seoul international Symposium on Helicobacter and Upper Gastrointestinal Diseases (2nd SI-HUGSymposium) &26th Annual Meeting of the Korean College of Helicobacter and Upper Gastrointestinal Research.
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Updated information about the pathogenesis of Helicobacter pylori infection.2018

    • Author(s)
      Yoshio Yamaoka
    • Organizer
      The 8th Shanghai International Conference of Gastroenterology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of neural stem/progenitor cell fate during development.2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      The Company of Biologists Workshop : Development and evolution of the human neocortex
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of astrocyte production during neocortical development.2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      The Joint Congress of the 40th Annual Meeting of Japanese Society of Biological Psychiatry and the 61st Annual Meeting of the Japanese Society for Neurochemistry
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of neural stem/progenitor cell fate during brain development.2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      Vienna BioCenter (VBC) Seminars Seminars
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] An Experimental Approach For Deciphering The First Steps In the Evolution Of Essential Insect Symbiosis2018

    • Author(s)
      古賀隆一
    • Organizer
      第46回内藤コンファレンス
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] キンギョ品種のゲノム解析と多様な形質を規定する遺伝子の探索Genomic diversity and loci under selection during goldfish (Carassius auratus) domestication2018

    • Author(s)
      大森義裕
    • Organizer
      日本生化学会年会
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Characterization of heat-responsible novel nuclear body containing MALAT12018

    • Author(s)
      Rena Onoguchi-Mizutani
    • Organizer
      第25回Tokyo RNA Club
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Symbiosis, Evolution and Biodiversity2018

    • Author(s)
      深津武馬
    • Organizer
      第46回内藤コンファレンス
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 共生細菌がもたらす新規生物機能2018

    • Author(s)
      深津武馬
    • Organizer
      第60回日本消化器病学会大会
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The population structure of enterohemorrhagic Escherichia coli 026 : H11 with recent and repeated stx2 acquisition in multiple lineages2018

    • Author(s)
      Yoshitoshi Ogura, Kazuko Seto, Shuji Yoshino, Junko Isobe, Yoshiki Etoh, Keiko Kimata, Eriko Maeda, Denis Piérard, Masahiro Kusumoto, Masato Akiba, Tadasuke Ooka, Nozomi Ishijima, Ken-ichi Lee, Sunao Iyoda, Jacques G. Mainil, and Tetsuya Hayashi
    • Organizer
      10th international symposium on Shiga toxin producing Escherichia coli infections
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The ectodomain shedding of NRG1 underlies spatial and temporal regulation of synaptogenesis and myelination of developing motor neurons2018

    • Author(s)
      F. Sato, M. Tabuchi, A. Kamezaki, A. Asakawa, K. Kawakami, A. Sehara-Fujisawa
    • Organizer
      11th meeting of the Zebrafish Disease Models Society (ZDM11)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Sleeping Beauty transposon insertional mutagenesis identified driver genes of uterine leiomyosarcoma2018

    • Author(s)
      Michiko Kodama
    • Organizer
      17th Biennial meeting of the international gynecologic cancer society
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Meta-analysis of community sequencing datasets reveals a key role of generalist species in microbial dispersion and evolution.2018

    • Author(s)
      Wataru Iwasaki, Sira Sriswasdi, and Ching-chia Yang
    • Organizer
      17th International Symposium on Microbial Ecology (ISME17)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Neuron-specific histone modification analysis of Alzheimer's diseae brain2018

    • Author(s)
      Kagari Mano, Tatsuo Mano, Atsushi Iwata, Shigeo Murayama, Tatsushi Toda
    • Organizer
      19th International Congress of Neuropathology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Immune Response to Tonsillar Microbiome Are Perturbed in the Development of IgA Nephropathy2018

    • Author(s)
      Hiroki Yamaguchi, Shin Goto, Masataka Yonezawa, Masafumi Tsuchida, Hirofumi Watanabe, Suguru Yamamoto, Yoshikatsu Kaneko, Ichiei Narita
    • Organizer
      2018 American Society of Nephrology Kidney Week
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Study on gravity-dependent skeletal muscle maintenance mechanisms using Zebrafish, aquatic organisms2018

    • Author(s)
      Fuminori Sato, Minyong Choi, Zi Wang, Kiyomi Imamura, Terumi Horiuchi, Wu Quan, Ikumi Fujita, Satoko Uchida, Mitsuyasu Kato, Fumiaki Tanigaki, Akira Higashibata, Masafumi Muratani, Junya Kobayashi, Akihisa Takahashi, Sumio Sugano, Fumio Matsuzaki, Yutaka Suzuki, Koichi Kawakami, Atsuko Sehara-Fujisawa
    • Organizer
      2018 ASCB EMBO Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Morphology, phylogeny and whole genome sequence of a hitherto undescribed scaly Parmales - a reminiscent of pre-diatom?2018

    • Author(s)
      佐藤晋也, 吉川伸哉, 南雲保, 出井雅彦, 桑田晃, 一宮睦雄
    • Organizer
      25th International Diatom Symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] “Autonomous fruit set” in an F1 hybrid of Capsicum chinense2018

    • Author(s)
      Yamazaki A、Hosokawa M
    • Organizer
      30th International Horticultural Congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Correlation analysis of single nucleosome dynamics reveals compact chromatin domain organization in living cells.2018

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      3R & 3C Meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Functional analysis of MeCP2, the Rett syndrome responsible factor, mediated by microRNA in neural stem cells2018

    • Author(s)
      H Nakashima, K Irie, K Tsujimura, T Imamura, K Nakashima
    • Organizer
      3rd Gage Lab symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Why the circadian clock is circadian : the local adaptation of circadian periods in the photoperiodic flowering of a Japanese short-day duckweed.2018

    • Author(s)
      Tomoaki Muranaka, Hiroshi Kudoh, Tokitaka Oyama
    • Organizer
      46th Naito Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] How are aversive stimuli processed in the brain?2018

    • Author(s)
      Koichi Kawakami
    • Organizer
      5th International Conference on “Imaging Structure and Function in the Zebrafish Brain”
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Sleeping Beauty transposon mutagenesis screen identifies cancer genes of uterine leiomyosarcoma dricing sarcomagenesis and lung metastasis2018

    • Author(s)
      Michiko Kodama
    • Organizer
      AACR annual meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Tau-related dysfunction of BRCA1 lead to reduced neuronal plasticity in Alzheimer's disease2018

    • Author(s)
      Tatsuo Mano, Atsushi Iwata, Takashi Nonaka, Airi Tarutani, Tadafumi Hashimoto, Masato Hasegawa, Takeshi Iwatsubo, Tatsushi Toda
    • Organizer
      AAIC 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] COMPREHENSIVE EVALUATION OF THE EFFECTS OF RARE AND COMMON EXONIC ABCG2 VARIANTS ON GOUT SUSCEPTIBILITY2018

    • Author(s)
      Toshihide Higashino, Tappei Takada, Hirofumi Nakaoka, Yu Toyoda, Blanka Stiburkova, Kenji Wakai, Hiroshi Ooyama, Ituro Inoue, Tony R, Merriman, Nariyoshi Shinomiya, Hirotaka Matsuo
    • Organizer
      Annual European Congress of Rheumatology EULAR 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Epigenetic regulation for functional centromere formation in Vertebrate Cells2018

    • Author(s)
      堀 哲也
    • Organizer
      ASCB | EMBO 2018 Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 3D structural analysis of neo-centromere region in vertebrate cells.2018

    • Author(s)
      西村浩平
    • Organizer
      ASCB | EMBO 2018 Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Identification of Secondary Metabolites Gene Clusters in the Class Ktedonobacteria with Actinomycetes-Like-Morphology2018

    • Author(s)
      Shuhei Yabe, Yu Zheng, Atsushi Toyoda, Yohei Minakuchi, Chang M. Wang, Yasuteru Sakai, Keietsu Abe, Akira Yokota
    • Organizer
      ASM microbe 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] VITCOMIC2 : Visualization and analysis tool for the phylogenetic composition of microbial communities based on 16S rRNA gene sequences2018

    • Author(s)
      Mori H, Kurokawa K.
    • Organizer
      ASM Microbe 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Characterization of epigenetic states in Brassica rapa L.2018

    • Author(s)
      藤本 龍 ; アクタ アヤシャ ; 高橋 聡史 ; 安田 剛志 ; 鈴木 穣 ; デニス エリザベス ; 関 原明
    • Organizer
      Brassica 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Correlation analysis of single nucleosome dynamics reveals compact chromatin domain organization in living cells.2018

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Cold Spring Harbor Meeting “Nuclear Organization & Function
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of the gene expression changes during male germ cell differentiation with scRNA-Seq2018

    • Author(s)
      島田 龍輝, 相賀 裕美子
    • Organizer
      CSH-Germ Cells Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Identification of functional targets reveals that suppression of Pumilio-mediated mRNA decay increases cell resistance to DNA damage2018

    • Author(s)
      秋光信佳
    • Organizer
      EMBO meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of Marchantia Gene Nomenclature Database2018

    • Author(s)
      Yasuhiro Tanizawa, Takako Mochizuki, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T. Yamato, Takayuki Kohchi, and Yasukazu Nakamura
    • Organizer
      EMBO Workshop
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Marpolbase : Construction of the Marchantia polymorpha Genome Database2018

    • Author(s)
      Takako Mochizuki, Yasuhiro Tanizawa, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T, Yamato, Takayuki Kohchi, and Yasukazu Nakamura
    • Organizer
      EMBO Workshop
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CRISPR/Cas9-based knockouts reveal the action mechanism of the sex pheromone PR-IP in unicellular zygnematophycean alga, Closterium peracerosum-strigosum-littorale complex2018

    • Author(s)
      Sekimoto, H.
    • Organizer
      EMBO Workshop -New shores in land plant evolution
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Kmt2b primes spermatogonia stem cells with monovalent and bivalent chromatin for gemline and embryonic development2018

    • Author(s)
      Ohbo K, Tomizawa S, Kobayashi Y, Royo Helene, Peters A. HFM, Anastassiadis K, Stewart A. F.
    • Organizer
      EMBO Workshop : From Epigenome towards Epitranscriptome in Cell Fate Choice
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] LGP2 regulates microRNA-mediated gene expression network by interacting with an RNA silencing enhancer, TRBP.2018

    • Author(s)
      Tomoko Takahashi, Yuko Nakano, Koji Onomoto, Chiaki Komori, Mitsutoshi Yoneyama, Kumiko Ui-Tei
    • Organizer
      EMBO | EMBL Symposia, Innate Immunity in Host-Pathogen Interactions
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Both common and rare genetic variants of ABCG2 are risks for gout2018

    • Author(s)
      Higashino T, Takada T, Nakaoka H, Toyoda Y, Stiburkova B, Miyata H, Ikebuchi Y, Nakashima H, Shimizu S, Kawaguchi M, Sakiyama M, Nakayama A, Akashi A, Tanahashi Y, Kawamura Y, Nakamura T, Wakai K, Okada R, Yamamoto K, Hosomichi K, Hosoya T, Ichida K, Ooyama H, Suzuki H, Inoue I, Merriman TR, Shinomiya N, Matsuo H.
    • Organizer
      European Human Genetics Conference 2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A hypervariable mitochondrial gene associated with geographical origin in a cosmopolitan bloom-forming alga, Heterosigma akashiwo2018

    • Author(s)
      Shoko Ueki
    • Organizer
      International Conference of Harmful Algae
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Genome and Genetic analyses revealed genes involved in plant parasitism in Orobanchaceae2018

    • Author(s)
      Satoko Yoshida, Songkui Cui, Juliane K, Ishida, Thomas Spallek, Takanori Wakatake, Ken Shirasu
    • Organizer
      International Plant Molecular Biology 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Chromatin regulation of neural stem cell fate during neocortical development2018

    • Author(s)
      Yusuke Kishi, Masafuji Tsuboi, Naohiro Kuwayama, Yusuke Hirabayashi, Yukiko Gotoh
    • Organizer
      International Society for Developmental Neuroscience-(ISDN)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ethylene participates in plant parasitism by modulating development and function of the haustorium, an invasive organ in parasitic plants2018

    • Author(s)
      Songkui Cui, Ken Shirasu, Satoko Yoshida
    • Organizer
      International Symposium on the Plant Hormone Ethylene
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] THE COMPLETE GENOME OF A NON-PHOTOSYNTHETIC DIATOM AND ITS PLASTIDAL SULFOLIPID BIOSYNTHESIS2018

    • Author(s)
      Kamikawa R, Oyama K, Tanizawa Y, Mochizuki T, Nakayama T, Tanifuji, G, Nakamura Y, Kato M, Miyashita H
    • Organizer
      ISOP/PSA
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Prediction of functional prognosis in Japanese NF2 patients by phenotype-genotype correlation2018

    • Author(s)
      寺西裕, 宮脇哲, 本郷博貴, 堂福翔吾, 岡野淳, 高柳俊作, 中冨浩文, 斉藤延人
    • Organizer
      NF Conference 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Roses of Nicotinamide adenine dinucleotide (NAD+) metabolism for retinal development and maintenance2018

    • Author(s)
      渡辺すみ子
    • Organizer
      RD2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The ribonuclease Regnase-1 maintains iron homeostasis via the destabilization of iron-regulatory transcripts2018

    • Author(s)
      Yoshinaga, M., Mino, T., Takeuchi, O.
    • Organizer
      RNA2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Human population history in the southwestern coastal region of the Sea of Okhotsk, inferred from ancient genome analysis2018

    • Author(s)
      Takehiro Sato, Noboru Adachi, Ryosuke Kimura, Minoru Yoneda, Hiroki Oota, Atsushi Tajima, Atsushi Toyoda, Hiromi Matsumae, Kae Koganebuchi, Kentaro K. Shimizu, Tsunehiko Hanihara, Andrzej Weber, Hirofumi Kato, Hajime Ishida
    • Organizer
      Society of Molecular Biology & Evolution 2018 Annual Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of microbes in foods of Drosophila melanogaster in the wild as nutrient sources2018

    • Author(s)
      牟禮あゆみ
    • Organizer
      The 13th Japanese Drosophila Research Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Turnover of sex chromosomes in Takifugu fish2018

    • Author(s)
      Risa Ieda, Shota Tajima, Kazufumi Atsumi, Daigaku Fujikawa, Mana Sato, Yosuke Kuruma, Shun Ohki, Aoi Nozawa, Takashi Koyama, Satoshi Tasumi, Toyoda Atsushi, Sho Hosoya, Kiyoshi Kikuchi
    • Organizer
      The 2018 International Symposium of Genetics in Aquaculture
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Revisiting Ohno's hypothesis of dosage compensation by using the neo-sex chromosomes in Drosophila2018

    • Author(s)
      Nozawa, Masafumi
    • Organizer
      The 2018 SMBE conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A novel multi-domain protein CCAR-1 regulates transcription and co-transcriptional splicing in C. elegans2018

    • Author(s)
      Hidehito Kuroyanagi, Marina Togo-Ohno, Eichi Watabe, Yohei Watanabe, Yutaka Suzuki, Masatoshi Hagiwara
    • Organizer
      The 23rd Annual Meeting of the RNA Society
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Characterization of histone H3 lysine 27 tri-methylation in Brassica rapa L.2018

    • Author(s)
      藤本 龍 ; アクタ アヤシャ ; 高橋 聡史 ; 西田 菜美子 ; 安田 剛志 ; 鈴木 穣 ; 関 原明 ; デニス エリザベス
    • Organizer
      The 25th International Congress on Sexual Plant Reproduction
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Generalist species drive microbial dispersion and evolution.2018

    • Author(s)
      Sira Sriswasdi, Ching-Chia Yang, and Wataru Iwasaki
    • Organizer
      The 26th international conference on Intelligent Systems for Molecular Biology (ISMB2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] On the evolutionary origin of insect wings : insights from basal insects2018

    • Author(s)
      Takahiro Ohde, Taro Mito and Teruyuki Niimi
    • Organizer
      The 46th Naito Conference "Mechanisms of Evolution and Biodiversity"
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Role of CD69 on iNKT cell development in the thymus.2018

    • Author(s)
      Kimura M. Y., Hayashizaki, K., Yagi, R., Endo, Y., Motohashi, S. and Nakayama, T.
    • Organizer
      The 47th Annual Meeting of The Japanese Society for Immunology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Integration of transcriptomics and metabolomics reveals a role for cellular methylation process during Bombyx mori nucleopolyhedrovirus infection2018

    • Author(s)
      Hiroyuki Hikida, Yutaka Suzuki, Munetaka Kawamoto, Toru Shimada, Susumu Katsuma
    • Organizer
      The 51st Annual Meeting of the Society for Invertebrate Pathology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Dynamic Changes of Chromatin Structure and Transcription By Transient Expression of HTLV-1 Tax in ATL Cells.2018

    • Author(s)
      Kurita, D., Yasunaga, JI., Tanaka, A., Mahgoub, M., and Matsuoka, M.
    • Organizer
      The 60th American Society of Hematology Annual Meeting and Exposition
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] LGP2, a virus sensor, interacts with TRBP and regulates gene expression via TRBP-bound miRNAs.2018

    • Author(s)
      Yuko Nakano, Tomoko Takahashi, Koji Onomoto, Mitsutoshi Yoneyama, Kumiko Ui-Tei
    • Organizer
      The 7th Global Network Forum on Infection and Immunity
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Clonal expansion and diversification of cancer-associated mutations in endometriosis and normal endometrium.2018

    • Author(s)
      Nakaoka H, Suda K, Yoshihara K, Enomoto T, Inoue I.
    • Organizer
      The American Society of Human Genetics 68th Annual Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines2018

    • Author(s)
      Sereewattanawoot, Sarun
    • Organizer
      The Biology of Genome
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Emergence and evolution of Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) from bovine commensal E. coli2018

    • Author(s)
      Yoshitoshi Ogura
    • Organizer
      The Second SMBE Satellite Workshop on Genome Evolution in Pathogen Transmission and Disease
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Establishment of an efficient breeding system for Ceratocystis canker resistance fig (Ficus carica)2018

    • Author(s)
      Kenta Shirasawa, Hiroshi Yakushiji, Takeshige Morita, Shota Jikumaru, Kazuki Mori, Hitoshi Nogata, Chiharu Hirata, Kosuke Tashiro, Tsuyoshi Habu, Sangwan Kim, Shuichi Himeno, Satoru Kuhara, Hidetoshi Ikegami
    • Organizer
      XXX. International Horticultural Congress (IHC2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Whole genome resequencing and the phenotypic variations of the goldfish (Carassius auratus) strains2018

    • Author(s)
      大森義裕
    • Organizer
      小型魚類研究会
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Decoding mouse embryonic neural stem cell fate by BMP2 responsiveness2018

    • Author(s)
      SAYAKO KATADA
    • Organizer
      第16回 幹細胞シンポジウム
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of the impact of choroid plexus on adult neurogenesis focusing on a key chronic inflammatory regulator, Angiopoietin-like protein 22018

    • Author(s)
      山下りえ, 中島欽一, 堅田明子
    • Organizer
      第41回 日本神経科学大会
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Galactose-deficient IgA1 expressed in tonsillar crypts correlates with the severity of glomerular injury in patients with IgA nephropathy2018

    • Author(s)
      Hiroki Yamaguchi, Shin Goto, Masafumi Tsuchida, Hirofumi Watanabe, Suguru Yamamoto, Yoshikatsu Kaneko, Ichiei Narita.
    • Organizer
      第61回日本腎臓学会学術総会
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Loss of RNA degradation factors upon Salmonella infection stabilizes nuclear long. non-coding RNAs2018

    • Author(s)
      秋光信佳
    • Organizer
      内藤カンファレンス
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] トランスポゾンを用いたマウス子宮平滑筋肉腫発症に関与するドライバー遺伝子のスクリーニング2018

    • Author(s)
      小玉美智子
    • Organizer
      日本癌学会学術総会
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Therapeutic response monitoring using digital PCR for patient-specific circulating tumor DNA identified by an esophageal squamous cell carcinoma-specific sequencing panel.2018

    • Author(s)
      Takeshi Iwaya, Fumitaka Endo, Yasushi Sasaki, Yuji Akiyama, Akira Sasaki, Mari Masuda, Tesshi Yamada, Takashi Tokino, Satoshi Nishizuka
    • Organizer
      米国臨床腫瘍学会
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Regulation of neural stem/progenitor cell fate during neocortical development.2018

    • Author(s)
      Yukiko Gotoh
    • Organizer
      134th WPI-IIIS Seminar
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 腸内細菌叢と宿主の新しいクロストークシステムの発見をめざして2018

    • Author(s)
      園山 慶
    • Organizer
      2018年度 日本乳酸菌学会泊まり込みセミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 半導体シーケンサーを活用したがんゲノム解析2018

    • Author(s)
      佐々木泰史
    • Organizer
      Applied Biosystems and Ion Torrent World Tour 2018
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ゼブラフィッシュ : 基礎生物学から薬学・医学分野への応用まで2018

    • Author(s)
      川上浩一
    • Organizer
      CBI学会2018年大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Dynamics on kinetochore assembly2018

    • Author(s)
      Tatsuo Fukagawa
    • Organizer
      Chromosome Stability 2018
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 長鎖ノンコーディングRNAから学ぶ人工RNAデザイン2018

    • Author(s)
      秋光信佳
    • Organizer
      ConBio2018
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 線虫の栄養による休眠制御機構の研究2018

    • Author(s)
      福山征光
    • Organizer
      ExCELLS研究会「休眠と代謝研究会」
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ナミテントウの斑紋多型原因遺伝子の同定と今後の研究展開2018

    • Author(s)
      新美輝幸・安藤俊哉
    • Organizer
      JSDB 秋季シンポジウム2018
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] マウスに自然に生じる突然変異の網羅的解析から見えてきたほ乳類ゲノム多様性維持の戦略2018

    • Author(s)
      権藤洋一
    • Organizer
      NAISTセミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 視細胞変性の発症と進展における眼内グリア細胞の役割2018

    • Author(s)
      渡辺すみ子
    • Organizer
      Retina Research Forum
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Divergence and convergence in the evolution of Drosophila neo-sex chromosomes2018

    • Author(s)
      Nozawa, Masafumi
    • Organizer
      Special Symposium To Celebrate Over 50,000 Citations Of Saitou & Nei's (1987) Neighbor-Joining Method Paper
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Metagenome informatics to understand microbial communities2018

    • Author(s)
      森宙史
    • Organizer
      イルミナマイクロバイオロジーワークショップ2018
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ショウジョウバエにおける新規トランスポゾン制御因子の同定と機能解明2018

    • Author(s)
      齋藤都暁
    • Organizer
      日本分子生物学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] マウス生殖細胞の性分化を制御するシグナル系2018

    • Author(s)
      相賀 裕美子
    • Organizer
      日本分子生物学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Epidermal stem cell dynamics during pregnancy2018

    • Author(s)
      豊島文子
    • Organizer
      分子生物学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ストレス抵抗における長鎖ノンコーディングRNAの機能に関する研究2018

    • Author(s)
      秋光信佳
    • Organizer
      放射線若手の会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Plant mobile domainを介した新規サイレンシング機構2018

    • Author(s)
      池田陽子
    • Organizer
      遺伝研研究会「転移因子と宿主の相互作用による生命機能と進化」
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 変異解析に基づくマウス参照配列の検証とほ乳類ゲノム多様性維持の戦略2018

    • Author(s)
      権藤洋一
    • Organizer
      基礎放射線医学セミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Metabolic regulation of RNA modification associated with human disease2018

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      熊大発生医学研HIGOセミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 世界のトウガラシ類の持つ多様な形質と新しい利用の視点2018

    • Author(s)
      細川宗孝
    • Organizer
      公開シンポジウム トウガラシ類の国産化を目指して -鹿児島県におけるトウガラシ類の生産と商品開発の取り組み-
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ナミテントウの斑紋形成遺伝子の同定2018

    • Author(s)
      新美輝幸
    • Organizer
      甲南大学「博学プロジェクト」セミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ゲノム解析へのグラフ構造の応用 ~ゲノムグラフの今~2018

    • Author(s)
      笠原 雅弘
    • Organizer
      生命医薬情報学連合大会(IIBMP2018)
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 進歩が著しいマイクロバイオームおよび微生物ゲノム研究法2018

    • Author(s)
      高橋 弘喜
    • Organizer
      第117回日本皮膚科学会総会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 転写因子IRF8による単核貪食細胞分化のエピジェネティック制御2018

    • Author(s)
      黒滝 大翼, 中林 潤, 川瀬 航, 西山 晃, 田村 智彦
    • Organizer
      第14回 麒麟塾
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] A small molecule reveals novel post-translational regulation of plant circadian clock2018

    • Author(s)
      中道範人
    • Organizer
      第25回時間生物学会学術大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 脳を創る神経幹細胞2018

    • Author(s)
      後藤由季子
    • Organizer
      第26回「脳の世紀」シンポジウム「AIと脳」
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 超解像イメージングによって明らかになった生細胞のゲノムの折り畳み構記造とそのダイナミクス2018

    • Author(s)
      前島一博
    • Organizer
      第31回腫瘍病理セミナー・北信がんプロFD講演会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 個体発生における生殖細胞系列突然変異の起因とその分子機構仮説2018

    • Author(s)
      権藤洋一
    • Organizer
      第36回基礎医学系懇談会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] LGP2-TRBP相互作用により制御されるmicroRNAの同定と、そのターゲット遺伝子の網羅的発現解析2018

    • Author(s)
      中野悠子、髙橋朋子、尾野本浩司、村上文則、鈴木穣、米山光俊、程久美子
    • Organizer
      第41回日本分子生物学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ウイルス感染により細胞内ウイルスセンサーはサイレンシングを介して遺伝子発現ネットワークを制御する2018

    • Author(s)
      髙橋朋子、中野悠子、尾野本浩司、米山光俊、程久美子
    • Organizer
      第41回日本分子生物学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 経発生におけるペリセントロメア領域の役割2018

    • Author(s)
      岸雄介、木下隆太、後藤由季子
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] マウス生殖細胞系列突然変異の起源とほ乳類における遺伝的多様性維持機構2018

    • Author(s)
      権藤洋一
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 神経発生におけるペリセントロメア領域の役割2018

    • Author(s)
      岸雄介、木下隆太、後藤由季子