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Quantization of molecular dynamics

Research Project

Project/Area Number 16K05511
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biological physics/Chemical physics/Soft matter physics
Research InstitutionThe University of Tokyo

Principal Investigator

Takahashi Satoshi  東京大学, 大学院総合文化研究科, 助教 (20456180)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2018: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords化学反応動力学 / 量子波束動力学 / 分子動力学 / 半古典力学 / 多体量子動力学
Outline of Final Research Achievements

The original goal of this research project, that is, incorporating quantum effects of nuclear degrees of freedom into molecular dynamics (MD) simulations, was not accomplished as expected, because of some of the technical barriers in numerical implementations.

On the other hand, although not directly related to this project, I have succeeded in establishing a computational method for tracking the molecular self-assemblies. By considering all the chemical species expected on the course of complicated molecular self-assembly reactions, and constructing reaction networks on which a stochastic method is applied, for some systems I could obtain reaction details unavailable from experiments due to their complex property and shortness in time-scale. Because the coordination self-assembly is one of the important research themes which are actively studied with MD simulations, insights gained in this work should in the future have fruitful effects on the original research theme.

Academic Significance and Societal Importance of the Research Achievements

本研究では,反応速度と反応ネットワークに立脚し,分子自己集合を数理モデルと数値計算を用いて確率的な手法で追跡することで,実験的には追跡不可能な詳細な反応過程に関する知見を導き,実験結果に対する解釈を与えることに成功した.将来的には,反応経路の合理的な設計,速度論的な反応の支配による生成物のコントロールを実現することが可能になる.未知の自己集合の反応過程の予測や制御に対する指針を得ることは,自己集合過程に本質的に存在する指導原理を明らかにすることへの道を切り開くと考えている.

Report

(5 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (11 results)

All 2019 2018 2017

All Journal Article (5 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 5 results,  Open Access: 2 results) Presentation (6 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Journal Article] Navigated self-assembly of a Pd2L4 cage by modulation of an energy landscape under kinetic control2019

    • Author(s)
      T. Tateishi, S. Takahashi, A. Okazawa, V. Mart-Centelles, J. Wang, T. Kojima, P. Lusby, H. Sato, S. Hiraoka
    • Journal Title

      Journal of the American Chemical Society

      Volume: 141 Issue: 50 Pages: 19669-19676

    • DOI

      10.1021/jacs.9b07779

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bifurcation of Self-assembly Pathways to Sheet or Cage Controlled by Kinetic Template Effect2019

    • Author(s)
      L. H. Foianesi-Takeshige, S. Takahashi, T. Tateishi, R. Sekine, A. Okazawa, W. Zhu, T. Kojima, K. Harano, E. Nakamura, H. Sato, and S. Hiraoka
    • Journal Title

      Communications Chemistry

      Volume: 2 Issue: 1 Pages: 128-128

    • DOI

      10.1038/s42004-019-0232-2

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A Kinetics Study of Ligand Substitution Reaction on Dinuclear Platinum Complexes: Stochastic Versus Deterministic Approach2019

    • Author(s)
      T. Iioka, S. Takahashi, Y. Yoshida, Y. Matsumura, S. Hiraoka, and H. Sato
    • Journal Title

      Journal of Computational Chemistry

      Volume: 40 Issue: 1 Pages: 281-287

    • DOI

      10.1002/jcc.25588

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] A Stochastic Model Study on the Self-Assembly Process of a Pd2L4 Cage Consisting of Rigid Ditopic Ligands2019

    • Author(s)
      S. Takahashi, Y. Sasaki, S. Hiraoka, and H. Sato
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 21 Issue: 12 Pages: 6341-6347

    • DOI

      10.1039/c8cp06102e

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Self-assembly Processes of Octahedron-shaped Pd6L4 Cages2019

    • Author(s)
      S. Komine, S. Takahashi, T. Kojima, H. Sato, and S. Hiraoka
    • Journal Title

      Journal of American Chemical Society

      Volume: 141 Issue: 7 Pages: 3178-3186

    • DOI

      10.1021/jacs.8b12890

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] Pd3L6二重辺三角形錯体の自己集合過程に影響を及ぼす分子内および分子間反応速度の均衡2019

    • Author(s)
      高橋 聡,佐々木 悠矢,佐藤 啓文,平岡 秀一
    • Organizer
      分子科学討論会2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] 配位自己集合過程の実時間追跡2019

    • Author(s)
      高橋 聡,佐々木 悠矢,佐藤 啓文,平岡 秀一
    • Organizer
      第22回理論化学討論会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 確率的アプローチによる配位自己集合反応の実時間追跡2019

    • Author(s)
      高橋聡,佐々木悠矢,佐藤啓文,平岡 秀一
    • Organizer
      日本化学会第99春季年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Pd2L4かご状錯体自己集合過程の実時間追跡2018

    • Author(s)
      高橋聡,佐々木悠矢,佐藤啓文,平岡 秀一
    • Organizer
      分子科学討論会2018
    • Related Report
      2018 Research-status Report
  • [Presentation] Beyond semiclassics for heavy particle dynamics in chemical reactions2018

    • Author(s)
      高橋聡
    • Organizer
      International symposium: Computational Chemistry in ICCMSE2018
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 配位空間の幾何学と量子波束ダイナミクス2017

    • Author(s)
      高橋聡,高塚和夫
    • Organizer
      分子科学討論会2017
    • Related Report
      2017 Research-status Report

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Published: 2016-04-21   Modified: 2021-02-19  

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