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Analysis of uncharacterized phototransduction system in the vertebrate photoreceptor cells

Research Project

Project/Area Number 16K07437
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Animal physiology/Animal behavior
Research InstitutionKyoto University

Principal Investigator

Yamashita Takahiro  京都大学, 理学研究科, 助教 (50378535)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords光受容蛋白質 / 視細胞 / 光受容
Outline of Final Research Achievements

Opn5 forms one of the photoreceptive protein, opsin, groups, whose genes are widely distributed in vertebrate genomes. We previously revealed that vertebrate Opn5 is classified into several subgroups and is diversified based on their molecular properties and tissue distribution patterns. In this study, we analyzed one of the subgroups, Opn5n, which is sensitive to visible light and is expressed in the photoreceptor cells. We constructed knock-out medaka fish line and revealed that the fish shows deficient morphological changes in dark-adapted and light-adapted retinas. In addition, we characterized the key amino acid residue(s) responsible for the visible light sensitivity in Opn5n.

Academic Significance and Societal Importance of the Research Achievements

動物は外界の光環境の変化から多様な情報を手に入れている。そのために重要な光センサーがオプシン類である。動物のゲノムでオプシン遺伝子を探索すると、哺乳類は10以下と少ないが、他の脊椎動物ではその倍以上持つものが多い。つまり、哺乳類以外の脊椎動物はより多様なオプシンを用いて、光環境の変化から多彩な情報を手に入れていると考えられる。本研究では、そのようなことに関わる1つのオプシン遺伝子を解析し、哺乳類では見られない光応答システムを明らかにできた。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (24 results)

All 2019 2018 2017 2016 Other

All Journal Article (15 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 15 results,  Open Access: 12 results,  Acknowledgement Compliant: 2 results) Presentation (8 results) (of which Int'l Joint Research: 3 results,  Invited: 4 results) Remarks (1 results)

  • [Journal Article] Elementary response triggered by transducin in retinal rods.2019

    • Author(s)
      Yue WWS, Silverman D, Ren X, Frederiksen R, Sakai K, Yamashita T, Shichida Y, Cornwall MC, Chen J, Yau KW
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 116 Issue: 11 Pages: 5144-5153

    • DOI

      10.1073/pnas.1817781116

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Shift in Conformational Equilibrium Induces Constitutive Activity of G-Protein-Coupled Receptor, Rhodopsin.2018

    • Author(s)
      Maeda R, Hiroshima M, Yamashita T, Wada A, Sako Y, Shichida Y, Imamoto Y.
    • Journal Title

      J. Phys. Chem. B

      Volume: 122 Issue: 18 Pages: 4838-4843

    • DOI

      10.1021/acs.jpcb.8b02819

    • NAID

      120006708207

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genotype determination of the OPN1LW/OPN1MW genes: novel disease-causing mechanisms in Japanese patients with blue cone monochromacy.2018

    • Author(s)
      Katagiri S, Iwasa M, Hayashi T, Hosono K, Yamashita T, Kuniyoshi K, Ueno S, Kondo M, Ueyama H, Ogita H, Shichida Y, Inagaki H, Kurahashi H, Kondo H, Ohji M, Hotta Y, Nakano T.
    • Journal Title

      Sci Rep

      Volume: 8 Issue: 1 Pages: 11507-11507

    • DOI

      10.1038/s41598-018-29891-9

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Single-molecule diffusion-based estimation of ligand effects on G protein?coupled receptors2018

    • Author(s)
      Yanagawa Masataka、Hiroshima Michio、Togashi Yuichi、Abe Mitsuhiro、Yamashita Takahiro、Shichida Yoshinori、Murata Masayuki、Ueda Masahiro、Sako Yasushi
    • Journal Title

      Science Signaling

      Volume: 11 Issue: 548 Pages: 1-16

    • DOI

      10.1126/scisignal.aao1917

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Red-Tuning of the Channelrhodopsin Spectrum Using Long Conjugated Retinal Analogues.2018

    • Author(s)
      Shen YC, Sasaki T, Matsuyama T, Yamashita T, Shichida Y, Okitsu T, Yamano Y, Wada A, Ishizuka T, Yawo H, Imamoto Y.
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 38 Pages: 5544-5556

    • DOI

      10.1021/acs.biochem.8b00583

    • NAID

      120006708206

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pinopsin evolved as the ancestral dim-light visual opsin in vertebrates2018

    • Author(s)
      Keita Sato, Takahiro Yamashita, Keiichi Kojima, Kazumi Sakai, Yuki Matsutani, Masataka Yanagawa, Yumiko Yamano, Akimori Wada, Naoyuki Iwabe, Hideyo Ohuchi, Yoshinori Shichida
    • Journal Title

      Communications Biology

      Volume: 1 Issue: 1 Pages: 156-156

    • DOI

      10.1038/s42003-018-0164-x

    • NAID

      120006528356

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Opn5L1 is a retinal receptor that behaves as a reverse and self-regenerating photoreceptor2018

    • Author(s)
      Sato Keita、Yamashita Takahiro、Ohuchi Hideyo、Takeuchi Atsuko、Gotoh Hitoshi、Ono Katsuhiko、Mizuno Misao、Mizutani Yasuhisa、Tomonari Sayuri、Sakai Kazumi、Imamoto Yasushi、Wada Akimori、Shichida Yoshinori
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 1255-1255

    • DOI

      10.1038/s41467-018-03603-3

    • NAID

      120006535079

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Evolutionary steps involving counterion displacement in a tunicate opsin2017

    • Author(s)
      Kojima Keiichi、Yamashita Takahiro、Imamoto Yasushi、Kusakabe Takehiro G.、Tsuda Motoyuki、Shichida Yoshinori
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 114 Issue: 23 Pages: 6028-6033

    • DOI

      10.1073/pnas.1701088114

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Drosophila melanogaster rhodopsin Rh7 is a UV-to-visible light sensor with an extraordinarily broad absorption spectrum.2017

    • Author(s)
      K. Sakai
    • Journal Title

      Sci. Rep.

      Volume: 7 Issue: 1 Pages: 7349-7349

    • DOI

      10.1038/s41598-017-07461-9

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chimeric microbial rhodopsins for optical activation of Gs-proteins2017

    • Author(s)
      K. Yoshida
    • Journal Title

      Biophysics and Physicobiology

      Volume: 14 Issue: 0 Pages: 183-190

    • DOI

      10.2142/biophysico.14.0_183

    • NAID

      130006252951

    • ISSN
      2189-4779
    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Spontaneous activation of visual pigments in relation to openness/closedness of chromophore-binding pocket.2017

    • Author(s)
      W.W. Yue
    • Journal Title

      Elife

      Volume: 6

    • DOI

      10.7554/elife.18492

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Alternative Formation of Red-Shifted Channelrhodopsins: Noncovalent Incorporation with Retinal-Based Enamine-Type Schiff Bases and Mutated Channelopsin2017

    • Author(s)
      T. Okitsu
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 65 Issue: 4 Pages: 356-358

    • DOI

      10.1248/cpb.c17-00054

    • NAID

      130005529782

    • ISSN
      0009-2363, 1347-5223
    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Adaptation of cone pigments found in green rods for scotopic vision through a single amino acid mutation2017

    • Author(s)
      K. Kojima
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: in press

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Two UV-Sensitive Photoreceptor Proteins, Opn5m and Opn5m2 in Ray-Finned Fish with Distinct Molecular Properties and Broad Distribution in the Retina and Brain.2016

    • Author(s)
      K. Sato
    • Journal Title

      PLoS One

      Volume: 11 Issue: 5 Pages: e0155339-e0155339

    • DOI

      10.1371/journal.pone.0155339

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Two Opsin 3-Related Proteins in the Chicken Retina and Brain: A TMT-Type Opsin 3 Is a Blue-Light Sensor in Retinal Horizontal Cells, Hypothalamus, and Cerebellum.2016

    • Author(s)
      M. Kato
    • Journal Title

      PLoS One

      Volume: 11 Issue: 11 Pages: 1-23

    • DOI

      10.1371/journal.pone.0163925

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 光で活性化されず不活性化される 非視覚光受容タンパク質Opn5L12018

    • Author(s)
      山下高廣
    • Organizer
      日本動物学会第89回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Revisit of the acquisition process of vertebrate scotopic vision2018

    • Author(s)
      Takahiro Yamashita
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Pinopsin acts as a scotopic visual pigment in lower vertebrates2018

    • Author(s)
      Takahiro Yamashita
    • Organizer
      18th International Conference on Retinal Proteins
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Blue light-sensitive subtype of vertebrate non-visual opsin Opn52017

    • Author(s)
      T. Yamashita
    • Organizer
      International Symposium on Biophysics of Rhodopsins
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Comparison of thermal activation rates between vertebrate visual pigments and pinopsin2017

    • Author(s)
      山下高廣
    • Organizer
      日本生物物理学会第55回年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Diversity of the photoreceptor protein Opn5 found in deuterostomes2016

    • Author(s)
      T. Yamashita
    • Organizer
      日本生物物理学会第54回大会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Analysis of the photoreceptor protein Opn5 found in deuterostomes other than vertebrates2016

    • Author(s)
      T. Yamashita
    • Organizer
      日本動物学会第87回大会
    • Place of Presentation
      沖縄コンベンションセンター
    • Year and Date
      2016-11-17
    • Related Report
      2016 Research-status Report
  • [Presentation] Characterization of visible light-sensitive subtype of non-visual opsin, Opn52016

    • Author(s)
      T. Yamashita
    • Organizer
      17th International Conference on Retinal Proteins
    • Place of Presentation
      ポツダム(ドイツ)
    • Year and Date
      2016-10-05
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Remarks] 視覚進化の新モデル ー哺乳類が失った”ピノプシン”からたどる脊椎動物の暗所視と色覚

    • URL

      https://academist-cf.com/journal/?p=9119

    • Related Report
      2018 Annual Research Report

URL: 

Published: 2016-04-21   Modified: 2020-03-30  

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