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Induction of cardiomyocyte differenciation using a nano-particle based artificial transcription factor

Research Project

Project/Area Number 16K12896
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Biomedical engineering/Biomaterial science and engineering
Research InstitutionKyoto University

Principal Investigator

Namasivayam Pandian  京都大学, 高等研究院, 助教 (20625446)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2017: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2016: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsピロールイミダゾールポリアミド / 人工転写因子 / 金ナノ粒子 / 分化誘導 / 遺伝子・核酸工学材料 / 遺伝子制御分子 / 細胞リプログラミング / 心筋細胞 / ミトコンドリア / 人工ヒストンコード / ナノテクノロジー / リプログラミング
Outline of Final Research Achievements

Harnessing the chemical biology of nucleic acids, our aim was to successfully carry out bow-arrow reprogramming to achieve clinically useful cell types like cardiomyocytes (CMs) by switching ON and OFF the key transcription factors (TFs) using artificial TFs. We have successfully achieved the first-ever synthetic DNA-binding inhibitor of SOX2, which not only suppressed the pluripotency program in the hiPSCs but also activated the cardiac mesoderm program to generate functional spontaneously contracting CMs when supplemented with a Wnt-signalling inhibitor. Considering the presence of numerous mitochondria in CMs, we also created a ligand for mitochondrial gene modulation. Also, we programmed synthetic molecular codes capable of inducing targeted transcriptional activation of therapeutically important developmental genes in human somatic cells. Current studies with NANO-TFs, the nanoparticle version of synthetic-TFs and distinct bioactive peptides suggest enhanced bioefficacy.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (30 results)

All 2018 2017 2016 Other

All Int'l Joint Research (5 results) Journal Article (8 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (13 results) (of which Int'l Joint Research: 3 results,  Invited: 12 results) Remarks (4 results)

  • [Int'l Joint Research] Rutgers University, NewJersey(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] AO Research Institute, Davos(Switzerland)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Manonmaniam Sundaranar University/NCBS-Instem/SRM University(India)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Rutgers University, Newjersey(米国)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] National Centre of Biological Sciences(India)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Synthetic DNA-binding inhibitor of HES1 alters the Notch signalling pathway and induces neuronal differentiation2018

    • Author(s)
      Y. Wei, Ganesh N. Pandian, Z. Yu, T. Zou, Y. Li, J. Darokar, K. Hashiya, T. Bando, K. Kim and H. Sugiyama.
    • Journal Title

      ACS Omega

      Volume: 3 Issue: 3 Pages: 3608-3616

    • DOI

      10.1021/acsomega.8b00220

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Biomimetic artificial epigenetic code for targeted acetylation of histones2018

    • Author(s)
      J. Taniguchi, Y. Feng, Ganesh N. Pandian, F. Hashiya, T. Hidaka, K. Hashiya, S. Park, T. Bando, S. Ito and H. Sugiyama.
    • Journal Title

      Journal of the American Chemical Society

      Volume: NA

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Antiproliferative and apoptotic activities of sequence-specific histone acetyltransferase inhibitors2017

    • Author(s)
      Yu Zutao、Taniguchi Junichi、Wei Yulei、Pandian Ganesh N.、Hashiya Kaori、Bando Toshikazu、Sugiyama Hiroshi
    • Journal Title

      Eur. J. Med. Chem.

      Volume: 138 Pages: 320-327

    • DOI

      10.1016/j.ejmech.2017.06.037

    • NAID

      120006460106

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Creation of a Synthetic Ligand for Mitochondrial DNA Sequence Recognition and Promoter-Specific Transcription Suppression2017

    • Author(s)
      Hidaka Takuya、Pandian Ganesh N.、Taniguchi Junichi、Nobeyama Tomohiro、Hashiya Kaori、Bando Toshikazu、Sugiyama Hiroshi
    • Journal Title

      Journal of the American Chemical Society

      Volume: 139 Issue: 25 Pages: 8444-8447

    • DOI

      10.1021/jacs.7b05230

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A synthetic DNA-binding inhibitor of SOX2 guides human induced pluripotent stem cells to differentiate into mesoderm2017

    • Author(s)
      Taniguchi Junichi、Pandian Ganesh N.、Hidaka Takuya、Hashiya Kaori、Bando Toshikazu、Kim Kyeong Kyu、Sugiyama Hiroshi
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Issue: 16 Pages: 9219-9228

    • DOI

      10.1093/nar/gkx693

    • NAID

      120006348322

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A multi-target small molecule for targeted transcriptional activation of therapeutically significant nervous system genes2016

    • Author(s)
      Y. Wei, Ganesh N. Pandian, T. Zou, J. Taniguchi, S. Sato, G. Kashiwazaki, T. Bando and H. Sugiyama
    • Journal Title

      ChemistryOpen

      Volume: 5 Issue: 6 Pages: 517-521

    • DOI

      10.1002/open.201600125

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Nucleosome assembly alters the accessibility of the antitumor agent duocarmycin B2 to duplex DNA.2016

    • Author(s)
      T. Zou, S. Kizaki, Ganesh N. Pandian, H Sugiyama
    • Journal Title

      Chemistry - A European Journal

      Volume: 22 Issue: 26 Pages: 8756-8758

    • DOI

      10.1002/chem.201600950

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Nature-Inspired Design of Smart Biomaterials Using the Chemical Biology of Nucleic Acids2016

    • Author(s)
      Ganesh N. Pandian, H Sugiyama
    • Journal Title

      Bulletin of the Chemical Society of Japan

      Volume: 89 Issue: 8 Pages: 843-868

    • DOI

      10.1246/bcsj.20160062

    • NAID

      130005464997

    • ISSN
      0009-2673, 1348-0634
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Smart genetic switches for therapeutic gene modulation2018

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Spring 2018 Colloquium Series at Rutgers University, NJ, USA
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Creation of a designer molecule to target and silence mitochondrial gene transcription2017

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      8th World Congress on Targeting Mitochondria, Berlin
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Targeted stem cell differentiation2017

    • Author(s)
      Yulei Wei
    • Organizer
      The International Society for Stem Cell Research (ISSCR)-Guangzhou 2017, China
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Genetic switches for therapeutic gene modulation2017

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Manonmaniam Sundaranar University - India
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Smart genetic switches - Science and surprises2017

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Popular Science -2017 by District Science Centre, National Council of Science Museums in India
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Designing biomimicking artificial transcription factors2017

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      The National Centre for Biological Sciences - Institute for Stem Cell Biology and Regenerative Medicine (NCBS-inStem)
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Designer Ligands for therapeutic genes2017

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      SRM University -India
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Artificial transcription factors as heart failure therapeutics2017

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Swastika Health Center-India
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Smart transcription factors2017

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      AO Research Institute, Switzerland
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Cellular reprogramming using smart genetic switches2016

    • Author(s)
      Ganesh N. Pandian
    • Organizer
      Department of Biotechnology Lecture Series
    • Place of Presentation
      Manonmaniam Sundaranar University, Tirunelveli, India
    • Year and Date
      2016-11-01
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Smart genetic switches2016

    • Author(s)
      Ganesh N. Pandian
    • Organizer
      Madurai Kamaraj University Visiting Program
    • Place of Presentation
      Madurai Kamaraj University, Madurai, India
    • Year and Date
      2016-10-30
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Nature-inspired smart genetic switches2016

    • Author(s)
      Ganesh N. Pandian
    • Organizer
      7th Indian JSPS Alumni Association (IJAA) International Conference on Science and Technology: Future Challenges and Solutions (STFCS-2016)
    • Place of Presentation
      University of Mysore, Mysore, India
    • Year and Date
      2016-08-08
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Epigenetics2016

    • Author(s)
      Ganesh N. Pandian
    • Organizer
      Department of Biotechnology Scientist of the Month Program
    • Place of Presentation
      DG Vaishnav College, Chennai, India
    • Year and Date
      2016-08-01
    • Related Report
      2016 Research-status Report
    • Invited
  • [Remarks] ミトコンドリア内の遺伝子発現を制御 -遺伝性疾患に治療の可能性拓ける-

    • URL

      http://www.kyoto-u.ac.jp/ja/research/research_results/2017/170616_1.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 遺伝子を直接制御する合成分子で組織再生の道が開ける

    • URL

      http://www.kyoto-u.ac.jp/ja/research/research_results/2017/170731_2.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] Designer molecule silences mitochondrial genes

    • URL

      https://cen.acs.org/content/cen/articles/95/i30/Designer-molecule-silences-mitochondrial-genes.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] Making Stem Cells Switch To Muscle

    • URL

      https://www.asianscientist.com/2017/10/in-the-lab/synthetic-molecule-tissue-regeneration/

    • Related Report
      2017 Annual Research Report

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Published: 2016-04-21   Modified: 2022-06-07  

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