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Developing Nonlinear Feature Selection Algorithm for Ultra High-Dimensional Data

Research Project

Project/Area Number 16K16114
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Intelligent informatics
Research InstitutionInstitute of Physical and Chemical Research (2017)
Kyoto University (2016)

Principal Investigator

Yamada Makoto  国立研究開発法人理化学研究所, 革新知能統合研究センター, ユニットリーダー (00581323)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Keywords特徴選択 / 非線形 / 機械学習
Outline of Final Research Achievements

We have developed a nonlinear feature selection algorithm for ultra-high dimensional data (more than 1 million features with tens of thousand data samples). To the best of our knowledge, this is the first algorithm that scales to such data. Moreover, for non-machine learning researchers, we developed a python package "pyHSICLasso" and distributed the code through Github. Now, we can install the software using "pip install pyHSICLasso". Finally, our research paper entitled "Ultra High-Dimensional Nonlinear Feature
Selection for Big Biological Data" was accepted to a top-tier data mining journal IEEE Transactions on Knowledge and Data Engineering (TKDE).

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (15 results)

All 2018 2017 2016 Other

All Int'l Joint Research (6 results) Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (6 results) (of which Int'l Joint Research: 6 results) Remarks (1 results)

  • [Int'l Joint Research] Aalto University(フィンランド)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] University Colledge London(英国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Indiana University/Huawei Research America/Michigan State University(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Simon Frasor University/University of British Columbia(カナダ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] JD.com(中国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data2018

    • Author(s)
      Yamada Makoto、Tang Jiliang、Lugo-Martinez Jose、Hodzic Ermin、Shrestha Raunak、Ouyang Hua、Radivojac Predrag、Sahinalp Cenk、Menczer Filippo、Chang Yi、Saha Avishek、Mamitsuka Hiroshi、Yin Dawei
    • Journal Title

      IEEE Transactions on Knowledge and Data Engineering

      Volume: n/a Issue: 7 Pages: 1-1

    • DOI

      10.1109/tkde.2018.2789451

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Lifecycle Modeling for Buzz Temporal Pattern Discovery2016

    • Author(s)
      Yi Chang, Makoto Yamada, Antonio Ortega
    • Journal Title

      ACM Transactions on Knowledge Discovery from Data (TKDD)

      Volume: 11 Issue: 2 Pages: 1-24

    • DOI

      10.1145/2994605

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] Localized Lasso for High-Dimensional Regression2017

    • Author(s)
      Yamada Makoto、Takeuchi Koh、Iwata Tomoharu、Taylor John-Shawe、Kaski Samuel
    • Organizer
      AISTATS 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Convex Factorization Machine for Toxicogenomics Prediction2017

    • Author(s)
      Yamada Makoto、Lian Wenzhao、Goyal Amit、Chen Jianhui、Wimalawarne Kishan、Khan Suleiman A.、Kaski Samuel、Mamitsuka Hiroshi、Chang Yi
    • Organizer
      Proceedings of the 23rd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Multi-view Anomaly Detection via Robust Probabilistic Latent Variable Models2016

    • Author(s)
      Tomoharu Iwata, Makoto Yamada
    • Organizer
      Neural Information Processing Systems (NIPS 2016)
    • Place of Presentation
      Barcelona Spain
    • Year and Date
      2016-12-05
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Which Tumblr Post Should I read Next?2016

    • Author(s)
      Zornitsa Kozareva, Makoto Yamada
    • Organizer
      the annual meeting of the Association for Computational Linguistics (ACL)
    • Place of Presentation
      Berlin Germany
    • Year and Date
      2016-08-07
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] A Robust Convex Formulation for Ensemble Clustering2016

    • Author(s)
      Junning Gao, Makoto Yamada, Samuel Kaski, Hiroshi Mamitsuka, Shanfeng Zhu
    • Organizer
      The Twenty-Fifth International Joint Conference on Artificial Intelligence (IJCAI-16)
    • Place of Presentation
      New York USA
    • Year and Date
      2016-07-09
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Timeline Summarization from Social Media with Life Cycle Models2016

    • Author(s)
      Yi Chang, Jiliang Tang, Dawei Yin, Makoto Yamada, Yan Liu
    • Organizer
      The Twenty-Fifth International Joint Conference on Artificial Intelligence (IJCAI-16)
    • Place of Presentation
      New York USA
    • Year and Date
      2016-07-09
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Remarks] pyHSICLasso

    • URL

      https://github.com/riken-aip/pyHSICLasso

    • Related Report
      2017 Annual Research Report

URL: 

Published: 2016-04-21   Modified: 2022-06-16  

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