Analysis of regulatory mechanism of hematopoiesis and exploration of the pathogenesis of hematopoietic neoplasms through comprehensive genetic analysis
Project/Area Number |
17013022
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Research Category |
Grant-in-Aid for Scientific Research on Priority Areas
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Allocation Type | Single-year Grants |
Review Section |
Biological Sciences
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Research Institution | The University of Tokyo |
Principal Investigator |
OGAWA Seishi The University of Tokyo, 医学部附属病院, 特任准教授 (60292900)
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Co-Investigator(Kenkyū-buntansha) |
熊野 恵城 東京大学, 医学部・附属病院, 助教 (90396721)
鈴木 隆浩 東京大学, 医学部附属病院, 寄附講座教員 (40345210)
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Project Period (FY) |
2008 – 2009
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Project Status |
Completed (Fiscal Year 2009)
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Budget Amount *help |
¥64,000,000 (Direct Cost: ¥64,000,000)
Fiscal Year 2009: ¥12,800,000 (Direct Cost: ¥12,800,000)
Fiscal Year 2008: ¥12,800,000 (Direct Cost: ¥12,800,000)
Fiscal Year 2007: ¥12,800,000 (Direct Cost: ¥12,800,000)
Fiscal Year 2006: ¥12,800,000 (Direct Cost: ¥12,800,000)
Fiscal Year 2005: ¥12,800,000 (Direct Cost: ¥12,800,000)
|
Keywords | SNPアレイ / 悪性リンパ腫 / ホジキンリンパ腫 / A20 / 11qUPD / 6q23 / 癌抑制遺伝子 / ゲノム解析 / MDS / CMML / c-Cb1 / チロシンキナーゼ / UPD / 造血器腫瘍 / ゲノム / マイクロアレイ / ゲノムコピー数異常 / 高密度オリゴヌクレオチドアレイ / LOH / アレル不均衡 / CNAG / Blimp1 / 造血システム |
Research Abstract |
Hematopoietic neoplasms are caused by deregulation of normal components of the hematopoietic system by gene mutations. In fact, many of genetic changes identified as a cause of hematopoietic neoplasms involves those genes implicated in normal regulation of hematopoiesis. In this study, we performed comprehensive genetic analyses of more than 2,000 hematopoietic neoplasms using high-density SNP arrays. We identified a number of genetic alterations involved in the pathogenesis of hematopoietic neoplasms, including gain-of-function mutations of c-CBL in myeloid neoplasms and inactivation mutations of A20 in B-lineage lymphomas, followed by their functional analysis. These findings are thought to contribute not only to our understanding of molecular pathogenesis of hematopoietic cancers, but also to adding our knowledge on regulatory mechanisms of normal hematopoiesis, together with the development of novel diagnostics and therapeutics for these neoplasms.
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Report
(6 results)
Research Products
(76 results)
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[Journal Article] Prevalence and prognostic impact of allelic imbalances associated with leukemic transformation of Philadelphia chromosome-negative myeloproliferative neoplasms.2010
Author(s)
Thoennissen NH, Krug UO, Lee DH, Kawamata N, Iwanski GB, Lasho T, Weiss T, Nowak D, Koren-Michowitz M, Kato M, Sanada M, Shih LY, Nagler A, Raynaud SD, Muller-Tidow C, Mesa R, Haferlach T, Gillil, DG, Tefferi A, Ogawa S, Koeffler HP.
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Journal Title
Related Report
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[Journal Article] SNP array analysis of tyrosine kinase inhibitor-resistant chronic myeloid leukemia identifies heterogeneous secondary genomic alterations.2010
Author(s)
Nowak D, Ogawa S, Muschen M, Kato M, Kawamata N, Meixel A, Nowak V, Kim HS, Kang S, Paquette R, Chang MS, Thoenissen NH, Mossner M, Hofmann WK, Kohlmann A, Weiss T, Haferlach T, Haferlach C, Koeffler HP.
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Journal Title
Blood. 115
Pages: 1049-1053
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[Journal Article] Hes1 immortalizes committed progenitors and plays a role in blast crisis transition in chronic myelogenous leukemia.2010
Author(s)
Nakahara F, Sakata-Yanagimoto M, Komeno Y, Kato N, Uchida T, Haraguchi K, Kumano K, Harada Y, Harada H, Kitaura J, Ogawa S, Kurokawa M, Kitamura T, Chiba S.
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Journal Title
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[Journal Article] High-resolution genomic copy number profiling of glioblastoma multiforme by single nucleotide polymorphism DNA microarray.2009
Author(s)
Yin D, Ogawa S, Kawamata N, Tunici P, Finocchiaro G, Eoli M, Ruckert C, Huynh T, Liu G, Kato M, Sanada M, Jauch A, Dugas M, Black KL, Koeffler HP.
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Journal Title
Mol Cancer Res. 7
Pages: 665-677
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[Journal Article] Gain-of-function of mutated C-CBL tumour suppressor in myeloid neoplasms.2009
Author(s)
Sanada M, Suzuki T, Shih LY, Otsu M, Kato M, Yamazaki S, Tamura A, Honda H, Sakata-Yanagimoto M, Kumano K, Oda H, Yamagata T, Takita J, Gotoh N, Nakazaki K, Kawamata N, Onodera M, Nobuyoshi M, Hayashi Y, Harada H, Kurokawa M, Chiba S, Mori H, Ozawa K, Omine M, Hirai H, Nakauchi H, Koeffler HP, Ogawa S
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Journal Title
Nature. 460
Pages: 904-908
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[Journal Article] Gain-of-function mutations and copy number increases of Notch2 in diffuse large B-cell lymphoma.2009
Author(s)
Lee SY, Kumano K, Nakazaki K, Sanada M, Matsumoto A, Yamamoto G, Nannya Y, Suzuki R, Ota S, Ota Y, Izutsu K, Sakata-Yanagimoto M, Hangaishi A, Yagita H, Fukayama M, Seto M, Kurokawa M, Ogawa S, Chiba S.
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Journal Title
Cancer Sci. 100
Pages: 920-926
NAID
Related Report
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[Journal Article] Molecular allelokaryotyping of relapsed pediatric acute lymphoblastic leukemia.2009
Author(s)
Kawamata N, Ogawa S, Seeger K, Kirschner-Schwabe R, Huynh T, Chen J, Megrabian N, Harbott J, Zimmermann M, Henze G, Schrappe M, Bartram CR, Koeffler HP.
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Journal Title
Int J Oncol. 34
Pages: 1603-1612
Related Report
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[Journal Article] Identified hidden genomic changes in mantle cell lymphoma using high-resolution single nucleotide polymorphism genomic array.2009
Author(s)
Kawamata N, Ogawa S, Gueller S, Ross SH, Huynh T, Chen J, Chang A, Nabavi-Nouis S, Megrabian N, Siebert R, Martinez-Climent JA, Koeffler HP.
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Journal Title
Exp Hematol. 37
Pages: 937-946
Related Report
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[Journal Article] Hepatoblastoma in a patient with sotos syndrome.2009
Author(s)
Kato M, Takita J, Takahashi K, Mimaki M, Chen Y, Koh K, Ida K, Oka A, Mizuguchi M, Ogawa S, Igarashi T.
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Journal Title
J Pediatr. 155
Pages: 937-939
Related Report
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[Journal Article] Frequent inactivation of A20 in B-cell lymphomas.2009
Author(s)
Kato M, Sanada M, Kato I, Sato Y, Takita J, Takeuchi K, Niwa A, Chen Y, Nakazaki K, Nomoto J, Asakura Y, Muto S, Tamura A, Iio M, Akatsuka Y, Hayashi Y, Mori H, Igarashi T, Kurokawa M, Chiba S, Mori S, Ishikawa Y, Okamoto K, Tobinai K, Nakagama H, Nakahata T, Yoshino T, Kobayashi Y, Ogawa S.
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Journal Title
Nature. 459
Pages: 712-716
NAID
Related Report
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[Journal Article] HapMap scanning of novel human minor histocompatibility antigens.2009
Author(s)
Kamei M, Nannya Y, Torikai H, Kawase T, Taura K, Inamoto Y, Takahashi T, Yazaki M, Morishima S, Tsujimura K, Miyamura K, Ito T, Togari H, Riddell SR, Kodera Y, Morishima Y, Kuzushima K, Ogawa S, Akatsuka Y.
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Journal Title
Blood. 113
Pages: 5041-5048
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[Journal Article] Notch activation induces the generation of functional NK cells from human cord blood CD34-positive cells devoid of IL-15.2009
Author(s)
Haraguchi K, Suzuki T, Koyama N, Kumano K, Nakahara F, Matsumoto A, Yokoyama Y, Sakata-Yanagimoto M, Masuda S, Takahashi T, Kamijo A, Takahashi K, Takanashi M, Okuyama Y, Yasutomo K, Sakano S, Yagita H, Kurokawa M, Ogawa S, Chiba S.
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Journal Title
J Immunol. 182
Pages: 6168-6178
Related Report
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[Journal Article] Single nucleotide polymorphism genomic arrays analysis of t(8;21) acute myeloid leukemia cells.2009
Author(s)
Akagi T, Shih LY, Ogawa S, Gerss J, Moore SR, Schreck R, Kawamata N, Liang DC, Sanada M, Nannya Y, Deneberg S, Zachariadis V, Nordgren A, Song JH, Dugas M, Lehmann S, Koeffler HP.
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Journal Title
Haematologica. 94
Pages: 1301-1306
NAID
Related Report
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[Journal Article] Hidden abnormalities and novel classification of t(15;17) acute promyelocytic leukemia (APL) based on genomic alterations.2009
Author(s)
Akagi T, Shih LY, Kato M, Kawamata N, Yamamoto G, Sanada M, Okamoto R, Miller CW, Liang DC, Ogawa S, Koeffler HP.
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Journal Title
Blood. 113
Pages: 1741-1748
NAID
Related Report
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[Journal Article] Frequent genomic abnormalities in acute myeloid leukemia/myelodysplastic syndrome with normal karyotype.2009
Author(s)
Akagi T, Ogawa S, Dugas M, Kawamata N, Yamamoto G, Nannya Y, Sanada M, Miller CW, Yung A, Schnittger S, Haferlach T, Haferlach C, Koeffler HP.
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Journal Title
Haematologica. 94
Pages: 213-223
Related Report
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[Journal Article] Chromosomal abnormalities and novel disease-related regions in progression from Barrett's esophagus to esophageal adenocarcinoma.2009
Author(s)
Akagi T, Ito T, Kato M, Jin Z, Cheng Y, Kan T, Yamamoto G, Olaru A, Kawamata N, Boult J, Soukiasian HJ, Miller CW, Ogawa S, Meltzer SJ, Koeffler HP.
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Journal Title
Int J Cancer. 125
Pages: 2349-2359
Related Report
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[Journal Article]2008
Author(s)
Yabe T, Matsuo K, Hirayasu K, Kashiwase K, Kawamura-Ishii S, Tanaka H, Ogawa A, Takanashi M, Satake M, Nakajima K, Tokunaga K, Inoko H, Saji H, Ogawa S, Juji T, Sasazuki T, Kodera Y, Morishima Y.
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Journal Title
Biol Blood Marrow Transplant. 14
Pages: 75-87
Related Report
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[Journal Article] ERCC5 is a novel biomarker of ovarian cancer prognosis.2008
Author(s)
Walsh CS, Ogawa S, Karahashi H, Scoles DR, Pavelka JC, Tran H, Miller CW, Kawamata N, Ginther C, Dering J, Sanada M, Nannya Y, Slamon DJ, Koeffler HP, Karlan BY.
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Journal Title
J Clin Oncol. 26
Pages: 2952-2958
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[Journal Article] Gain of GRHL2 is associated with early recurrence of hepatocellular carcinoma.2008
Author(s)
Tanaka Y, Kanai F, Tada M, Tateishi R, Sanada M, Nannya Y, Ohta M, Asaoka Y, Seto M, Shiina S, Yoshida H, Kawabe T, Yokosuka O, Ogawa S, Omata M.
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Journal Title
J Hepatol. 49
Pages: 746-757
Related Report
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[Journal Article] Whole-genome profiling of chromosomal aberrations in hepatoblastoma using high-density single-nucleotide polymorphism genotyping microarrays.2008
Author(s)
Suzuki M, Kato M, Yuyan C, Takita J, Sanada M, Nannya Y, Yamamoto G, Takahashi A, Ikeda H, Kuwano H, Ogawa S, Hayashi Y.
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Journal Title
Cancer Sci. 99
Pages: 564-570
NAID
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[Journal Article] Exploration of the genetic basis of GVHD by genetic association studies.2008
Author(s)
Ogawa S, Matsubara A, Onizuka M, Kashiwase K, Sanada M, Kato M, Nannya Y, Akatsuka Y, Satake M, Takita J, Chiba S, Saji H, Maruya E, Inoko H, Morishima Y, Kodera Y, Takehiko S.
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Journal Title
Biol Blood Marrow Transplant. 15
Pages: 39-41
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[Journal Article] Integrated analysis of copy number alterations and loss of heterozygosity in human pancreatic cancer using a high-resolution, single nucleotide polymorphism array.2008
Author(s)
Lin LJ, Asaoka Y, Tada M, Sanada M, Nannya Y, Tanaka Y, Tateishi K, Ohta M, Seto M, Sasahira N, Kawabe T, Zheng CQ, Kanai F, Ogawa S, Omata M.
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Journal Title
Oncology. 75
Pages: 102-112
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[Journal Article] Both Notch1 and Notch2 contribute to the regulation of melanocyte homeostasis.2008
Author(s)
Kumano K, Masuda S, Sata M, Saito T, Lee SY, Sakata-Yanagimoto M, Tomita T, Iwatsubo T, Natsugari H, Kurokawa M, Ogawa S, Chiba S.
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Journal Title
Related Report
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[Journal Article] Identification of human minor histocompatibility antigens based on genetic association with highly parallel genotyping of pooled DNA.2008
Author(s)
Kawase T, Nannya Y, Torikai H, Yamamoto G, Onizuka M, Morishima S, Tsujimura K, Miyamura K, Kodera Y, Morishima Y, Takahashi T, Kuzushima K, Ogawa S, Akatsuka Y.
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Journal Title
Blood. 111
Pages: 3286-3294
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[Journal Article] Cloning of genes involved in chromosomal translocations by high-resolution single nucleotide polymorphism genomic microarray.2008
Author(s)
Kawamata N, Ogawa S, Zimmermann M, Niebuhr B, Stocking C, Sanada M, Hemminki K, Yamatomo G, Nannya Y, Koehler R, Flohr T, Miller CW, Harbott J, Ludwig WD, Stanulla M, Schrappe M, Bartram CR, Koeffler HP.
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Journal Title
Proc Natl Acad Sci U S A. 105
Pages: 11921-11926
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[Journal Article] Molecular allelokaryotyping of pediatric acute lymphoblastic leukemias by high-resolution single nucleotide polymorphism oligonucleotide genomic microarray.2008
Author(s)
Kawamata N, Ogawa S, Zimmermann M, Kato M, Sanada M, Hemminki K, Yamatomo G, Nannya Y, Koehler R, Flohr T, Miller CW, Harbott J, Ludwig WD, Stanulla M, Schrappe M, Bartram CR, Koeffler HP.
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Journal Title
Blood. 111
Pages: 776-784
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[Journal Article] Genetic profiling of myeloproliferative disorders by single-nucleotide polymorphism oligonucleotide microarray.2008
Author(s)
Kawamata N, Ogawa S, Yamamoto G, Lehmann S, Levine RL, Pikman Y, Nannya Y, Sanada M, Miller CW, Gillil, DG, Koeffler HP.
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Journal Title
Exp Hematol. 36
Pages: 1471-1479
Related Report
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[Journal Article] HapMap scanning of novel human minor histocompatibility antigens.2008
Author(s)
Kamei M, Nannya Y, Torikai H, Kawase T, Taura K, Inamoto Y, Takahashi T, Yazaki M, Morishima S, Tsujimura K, Miyamura K, Ito T, Togari H, Riddell SR, Kodera Y, Morisima Y, Kuzushima K, Ogawa S, Akatsuka Y.
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Journal Title
Related Report
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[Journal Article] Oncogenic mutations of ALK kinase in neuroblastoma.2008
Author(s)
Chen Y, Takita J, Choi YL, Kato M, Ohira M, Sanada M, Wang L, Soda M, Kikuchi A, Igarashi T, Nakagawara A, Hayashi Y, Mano H, Ogawa S.
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Journal Title
Nature. 455
Pages: 971-974
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[Journal Article] Therapy of relapsed leukemia after allogeneic hematopoietic cell transplant with T cells specific for minor histocompatibility antigens.
Author(s)
Warren EH, Fujii N, Akatsuka Y, Chaney CN, Mito JK, Loeb KR, Gooley TA, Brown ML, Koo KK, Rosinski KV, Ogawa S, Matsubara A, Appelbaum FR, Riddell SR.
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Journal Title
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[Journal Article] Relapse of leukemia with loss of mismatched HLA due to uniparental disomy following haploidentical hematopoietic stem cell transplantation.
Author(s)
Villalobos I, Takahashi Y, Akatsuka Y, Muramatsu H, Nishio N, Hama A, Yagasaki H, Saji H, Kato M, Ogawa S, Kojima S.
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Journal Title
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[Journal Article] Prognostic significance of genetic alterations detected by high-density single nucleotide polymorphism array in gastric cancer.
Author(s)
Tada M, Kanai F, Tanaka Y, Sanada M, Nannya Y, Tateishi K, Ohta M, Asaoka Y, Seto M, Imazeki F, Yoshida H, Ogawa S, Yokosuka O, Omata M.
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Journal Title
NAID
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[Journal Article] CBL mutations in juvenile myelomonocytic leukemia, but not in pediatric myelodysplastic syndrome.
Author(s)
Shiba N, Kato M, Myoung-ja P, Sanada M, Ito E, Fukushima K, Sako M, Arakawa H, Ogawa S, Hayashi Y.
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Journal Title
Related Report
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[Journal Article] Genomic profiling of adult acute lymphoblastic leukemia (ALL) by single nucleotide polymorphism oligonucleotide microarray and comparison to pediatric ALL.
Author(s)
Okamoto R, Ogawa S, Nowak D, Kawamata N, Akagi T, Kato K, Sanada M, Weiss T, Haferlach C, Dugas M, Ruckert C, Haferlach T, Koeffler H.
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Journal Title
Haematologica. (in press)
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[Journal Article] Impact of highly conserved HLA haplotype on acute graft-versus-host disease.
Author(s)
Morishima S, Ogawa S, Matsubara A, Kawase T, Nannya Y, Kashiwase K, Satake M, Saji H, Inoko H, Kato S, Kodera Y, Sasazuki T, Morishima Y.
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Journal Title
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[Journal Article] Gastric Cancer Cell Line Hs746T Harbors a Splice Site Mutation of c-Met Causing Juxtamembrane Domain Deletion.
Author(s)
Asaoka Y, Toda M, Ikenoue T, Seto M, Imai M, Miyabayashi K, Yamamoto K, Yamamoto S, Kudo Y, Mohri D, Isomura Y, Ijichi H, Tateishi K, Kanai F, Ogawa S, Omata M, Koike K.
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Journal Title
Biochem Biophys Res Commun. (in press)
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