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In vivo Reconstruction of Functional Protein Complexes by Using Nano-particles and its Application for Artificial Cell

Research Project

Project/Area Number 17076008
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionKyoto University

Principal Investigator

YOSHIMURA Shige h.  Kyoto University, 大学院・生命科学研究科, 准教授 (90346106)

Co-Investigator(Kenkyū-buntansha) TAKEYASU Kunio  京都大学, 大学院・生命科学研究科, 教授 (40135695)
HIZUME Kohjiv  京都大学, 大学院・生命科学研究科, 助教 (10378846)
Project Period (FY) 2005 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥76,100,000 (Direct Cost: ¥76,100,000)
Fiscal Year 2009: ¥10,000,000 (Direct Cost: ¥10,000,000)
Fiscal Year 2008: ¥10,000,000 (Direct Cost: ¥10,000,000)
Fiscal Year 2007: ¥17,700,000 (Direct Cost: ¥17,700,000)
Fiscal Year 2006: ¥19,200,000 (Direct Cost: ¥19,200,000)
Fiscal Year 2005: ¥19,200,000 (Direct Cost: ¥19,200,000)
Keywordsナノパーティクル / 核輸送 / 量子ドット / クロマチン / 核内骨格 / 染色体タンパク質 / 疎水性相互作用 / 試験管内タンパク質合成 / レーザトラップ / 1分子測定 / 再構成 / 核膜 / 原子間力顕微鏡 / レーザートラップ / カンチレバー修飾 / レーザーピンセット / 中心体 / 1分子操作
Research Abstract

In this project, we have obtained the following results;
i) By combining in vitro nucleosome reconstitution procedure and atomic force microscopy, "30-nm-chromatin fiber" was successfully reconstituted.
ii) By utilizing fast-scanning atomic force microscopy, molecular mechanisms of various enzymatic functions and processes have been elucidated.
iii) We established the technique to microinject a fluorescent particle into a living cell and manipulate it by optical trap without damaging the cell.
iv) By attaching nuclear localization signal peptide to quantum dots, we established the method to deliver nano-particles into a living cell nucleus.
v) Structural and functional properties of nuclear scaffold proteins have been obtained by combining proteomics, bioinformatics, molecular biology and biochemistry.

Report

(6 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (110 results)

All 2010 2009 2008 2007 2006 2005 Other

All Journal Article (84 results) (of which Peer Reviewed: 65 results) Presentation (21 results) Book (3 results) Remarks (2 results)

  • [Journal Article] Molecular mechanisms underlying nucleocytoplasmic shuttling of actinin-4.2010

    • Author(s)
      M. Kumeta, S.H. Yoshimura, M. Harata, K. Takeyasu
    • Journal Title

      J. Cell. Sci. 123(Pt7)

      Pages: 1020-1030

    • NAID

      120002561115

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular Dynamics of DNA and Nucleosomes in Solution Studied by Fast-scanning Atomic Force Microscopy.2010

    • Author(s)
      Y. Suzuki, Y. Higuchi, K. Hizume, M. Yokokawa, S.H. Yoshimura, K. Yoshikawa, K. Takeyasu
    • Journal Title

      Ultramicroscopy (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular mechanisms underlying nucleocytoplasmic shuttling of actin in-4.2010

    • Author(s)
      S.H.Yoshimura, 他3名
    • Journal Title

      J.Cell Sci. 123

      Pages: 1020-1030

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular Dynamics of DNA and Nucleosomes in Solution Studied by Fast-scanning Atomic Force Microscopy.2010

    • Author(s)
      S.H.Ybshimura, 他6名
    • Journal Title

      Ultramicroscopy (印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel nucleoid protein of Escherichia coli induced under anaerobiotic growth conditions.2010

    • Author(s)
      S.H.Yoshimura, 他3名
    • Journal Title

      Nuc. Acids. Res. (印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic and targeted analytical identification of BXDC1 and EBNA1BP2 as dynamic scaffold proteins in the nucleolus2009

    • Author(s)
      Y. Hirano, K. Ishii, M. Kumeta, K. Furukawa, K. Takeyasu, T. Horigome
    • Journal Title

      Genes Cells 14

      Pages: 155-166

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Human transcriptional coactivator PC4 stimulates DNA end joining and activates DSB repair activity2009

    • Author(s)
      K. Batta, M. Yokokawa, K. Takeyasu, T.K. Kundu
    • Journal Title

      J. Mol. Biol. 385

      Pages: 788-799

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cell cycle-dependent phosphorylation of MAN12009

    • Author(s)
      Y. Hirano, Y. Iwase, K. Ishii, M. Kumeta, T. Horigome, K. Takeyasu
    • Journal Title

      Biochemistry 48(7)

      Pages: 1636-1643

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Removal of histone tails from nucleosome dissects the physical mechanisms of salt-induced aggregation, linker histone H1-induced compaction and 30-nm fiber formation of the nucleosome array2009

    • Author(s)
      K. Hizume, T. Nakai, S. Araki, E. Prieto, K. Yoshikawa, K. Takeyasu
    • Journal Title

      Ultramicroscopy 109(8)

      Pages: 868-873

    • NAID

      120001468043

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Single-molecule analysis of protein-DNA complexes formed during partition of newly replicated plasmid molecures in Streptococcus pyogenes.2009

    • Author(s)
      F. Pratto, Y. Suzuki, K. Takeyasu, J.C. Alonso
    • Journal Title

      J. Biol. Chem. 284(44)

      Pages: 30298-30306

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nucleosomal array reconstituted from ring and linear DNA.2009

    • Author(s)
      S. Araki, K. Hizume, T. Iwaki, Y. Suzuki, K. Takeyasu, K. Yoshikawa
    • Journal Title

      Chem. Phys. Lett. 479

      Pages: 284-289

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Single-Molecule analysis of protein-DNA EcoRII protein complexes revealed with high-speed atomic force microscopy.2009

    • Author(s)
      J. Gilmore, Y. Suzuki, G. Tamulaitis, V. Siksnys, K. Takeyasu, Y.L. Lyubchenko
    • Journal Title

      Biochemistry 48(44)

      Pages: 10492-10498

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Removal of histone tails from nucleosome dissects the physical mech anisms of salt-induced aggregation, linker histone H1-induced compaction and 30-nm fiber formation of the nucleosome array2009

    • Author(s)
      K.Hizulne, 他5名
    • Journal Title

      Ultramicroscopy 109

      Pages: 868-873

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-molecule analysis of protein-DNA complexes formed during partition of newly replicated plasmid molecules in Streptococcus pyogenes.2009

    • Author(s)
      K.Takeyasu, 他3名
    • Journal Title

      J.Biol. Chem. 284

      Pages: 30298-30306

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nucleosomal array reconstituted from ring and linear DNA.2009

    • Author(s)
      K.Hizume, 他5名
    • Journal Title

      Chem. Phys. Lett. 479

      Pages: 284-289

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-Molecule analysis of protein-DNA EcoRII protein complexes revealed with high-speed atomic force microscopy.2009

    • Author(s)
      K.Takeyasu, 他5名
    • Journal Title

      Biochemistry 48

      Pages: 10492-10498

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cell cycle-dependent phosphorylation of MAN12009

    • Author(s)
      K.Takeyasu, 他5名
    • Journal Title

      Biochemistry 48

      Pages: 1636-1643

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cell Cycle-Dependent Phosphorylation of MAN-12009

    • Author(s)
      K. Takeyasu
    • Journal Title

      Biochemisitry 48

      Pages: 1736-1643

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Removal of histone tails from nucleosome dissects the physical mechanisms of salt-induced aggregation, linker histone HI-induced compaction and 30-nm fiber formation of the nucleosome array2009

    • Author(s)
      K. Hizume, K. Takeyasu
    • Journal Title

      Ultramicroscopy (印刷中)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-mokecule Anatomy by Atomic Force Microscopy and Recognition Imaging2009

    • Author(s)
      K. Hizume, S. H. Yoshimura, K. Takeyasu
    • Journal Title

      Arch.Histology and Cytology (印刷中)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear Architectures and Chromatin Dynamics Revealed by Atomic Force Microscopy in Combination with Biochemistry and Cell Biology.2008

    • Author(s)
      Y. Hirano, H. Takahashi, M. Kumeta, K. Hizume, Y. Hirai, S. Otsuka, S.H. Yoshimura, K. Takeyasu
    • Journal Title

      Pflugers Arch. 456

      Pages: 139-153

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] In situ analysis of the higher-order genome structure in a single Escherichia coli cell.2008

    • Author(s)
      E. Shindo, K. Kubo, R.L. Ohniwa, K. Takeyasu, K. Yoshikawa
    • Journal Title

      J. Biotechnol 133(2)

      Pages: 172-176

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic structures of Bacillus subtilis RecN-DNA complexes.2008

    • Author(s)
      H. Sanchez, P.P. Cardenas, S.H. Yoshimura, K. Takeyasu, J.C. Alonso
    • Journal Title

      Nuc. Acids Res. 36(1)

      Pages: 110-120

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Following translation by single ribosomes one codon at a time.2008

    • Author(s)
      J. Wen, L. Lancaster, C. Hodges, A. Zeri, S.H. Yoshimura, H.F. Noller, C. Bustamante, I. Tinoco
    • Journal Title

      Jr., Nature 452(7187)

      Pages: 598-603

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Scanning probe microscope revealed mechanical properties of plasma membrane and nuclear envelope in living cells.2008

    • Author(s)
      M. Yokokawa, K. Takeyasu, S.H. Yoshimura
    • Journal Title

      J. Microscopy 232

      Pages: 82-90

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fast degradation of the auxiliary subunit of the Na/K-ATPase in the plasma membrane of HeLa cells.2008

    • Author(s)
      S.H. Yoshimura, S. Iwasaka, W. Schwarz, K. Takeyasu
    • Journal Title

      J. Cell Sci. 121

      Pages: 2159-2168

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Individual binding pockets of importin β for FG-nucleoporins are differently regulated by RanGTP2008

    • Author(s)
      S. Otsuka, S. Iwasaka, Y. Yoneda, K. Takeyasu, S.H. Yoshimura
    • Journal Title

      Proc. Natl. Acad. Sci. U S A. 105

      Pages: 16101-16106

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Individual binding pockets of importin β for FG-nucleoporins are differently regulated by RanGTP.2008

    • Author(s)
      K. Takeyasu, S. H. Yoshimura
    • Journal Title

      Proc.Nat1.Acad Science USA 105

      Pages: 16101-16106

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Following translation by single ribosomes one codon at a time2008

    • Author(s)
      S.H. Yoshimura
    • Journal Title

      Nature 452

      Pages: 598-603

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Scanning probe microscope revealed mechanical properties of plasma membrane and nuclear-envelope in living cells.2008

    • Author(s)
      K. Takeyasu, S. H. Yoshimura
    • Journal Title

      J. Microscopy 232

      Pages: 82-90

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fast degradation of the auxiliary subunit of the Na/K-ATPase in the plasma membrane of HeLa cells2008

    • Author(s)
      S.H. Yoshimura, K. Takeyasu
    • Journal Title

      J. Cell Sci. 121

      Pages: 2159-2168

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] nuclear matrix contains novel WD-repeat and disordered-regin-rich proteins2008

    • Author(s)
      K. Takeyasu
    • Journal Title

      FEBS Lett. 582

      Pages: 3515-3519

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic and targeted analytical identification of BXDC1 and BBNA1BP2 as dynamic scaffold proteins in the nucleous2008

    • Author(s)
      K. takeyasu
    • Journal Title

      Genes Cell 14

      Pages: 155-166

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear Architectures and Chiomatin Dynamics Revealed by Atomic Force Microscopy in Combination with Biochemisitry and Cell Buology2008

    • Author(s)
      K. Hizume, S. H. Yoshimura, K. Takevasu
    • Journal Title

      Eur. J. Physiology 456

      Pages: 139-153

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In situ analysisi of the higher-order genome strucuture in a single Escherichis coli cell2008

    • Author(s)
      K.Takeyasu
    • Journal Title

      J.Biotechnology 133

      Pages: 172-176

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic structures of Bacillus subtilis RecN-DNA complexes.2008

    • Author(s)
      S. H. Yoshimura, K. Takeyasu
    • Journal Title

      Nuc. Acids Res. 36

      Pages: 110-120

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Following translation by single ribosomes one codon at a time2008

    • Author(s)
      S. H. Yoshimura
    • Journal Title

      Nature 452

      Pages: 598-603

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear Architectures and Chromatin Dynamics Revealed by Atomic Force Microscopy in Combination with Biochemistry and Cell Biology2008

    • Author(s)
      K. Hizume, S. H. Yoshimura, K. Takeyasu
    • Journal Title

      Pflugers Arch. 456

      Pages: 139-153

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Scanaing probe microscope revealed mechanical properties of plasma membrane and nuclear envelope in living cells2008

    • Author(s)
      K. Takeyasu, S. H. Yoshimura
    • Journal Title

      J. Microscopy (印刷中)(印刷中)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Atomic Force Microscopy Dissects the Hierarchy of Genome Architectures in Eukaryote, Prokaryote, and Chloroplast.2007

    • Author(s)
      R.L. Ohniwa, K. Morikawa, J. Kim, T. Kobori, K. Hizume, R. Matsumi, H. Atomi, T. Imanaka, T. Ohta, C. Wada, S.H. Yoshimura, K. Takeyasu
    • Journal Title

      Microsc. Microanal. 13(1)

      Pages: 3-12

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical, molecular genetic and structural analyses of the Staphylococcal nucleoid.2007

    • Author(s)
      K. Morikawa, R.L. Ohniwa, J. Kim, S.L. Takeshita, A. Maruyama, Y. Inose, K. Takeyasu, T. Ohta
    • Journal Title

      Microscopy and Microanalysis 13

      Pages: 30-35

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Single-molecule detection of phosphorylation-induced plasticity changes during ezrin activation.2007

    • Author(s)
      D. Liu, L. Ge, F. Wang, H. Takahashi, D. Wang, Z. Guo, S.H. Yoshimura, T. Ward, X. Ding, K. Takeyasu, X. Yao
    • Journal Title

      FEBS Lett. 581(18)

      Pages: 3563-3571

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping.2007

    • Author(s)
      N. Crampton, M. Yokokawa, D.T. Dryden, J.M. Edwardson, D.N. Rao, K. Takeyasu, S.H. Yoshimura, R.M. Henderson
    • Journal Title

      Proc. Natl. Acad. Sci. USA. 104(31)

      Pages: 12755-12760

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Covalent attachment of protein to the tip of a multiwalled carbon nanotube without sidewall decoration.2007

    • Author(s)
      H. Maruyama, S.H. Yoshimura, S. Akita, A. Nagataki, Y. Nakayama
    • Journal Title

      J. Appl. Phys. 102

      Pages: 94701-94701

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Chromatin dynamics of unfolding and refolding controlled by the nucleosome repeat length and the linker and core histones.2007

    • Author(s)
      T. Kobori, S. Iwamoto, K. Takeyasu, T. Ohtani
    • Journal Title

      Biopolymers 85

      Pages: 295-307

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Transcription-coupled Nucleoid Architecture in Bacteria.2007

    • Author(s)
      R.L. Ohniwa, K. Morikawa, J. Kim, S.L. Takeshita, T. Ohta, C. Wada, K. Takeyasu
    • Journal Title

      Gene to Cells 12

      Pages: 1141-1152

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Topoisomerase II, a scaffold component, promotes chromatin- compaction in vitro in a linker-histone H1-dependent manner.2007

    • Author(s)
      K. Hizume, S. Araki, K. Yoshikawa, K. Takeyasu
    • Journal Title

      Nucleic Acids Res. 35(8)

      Pages: 2787-2799

    • NAID

      120000896374

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Atomic force microscopy dissects the hierarchy of genome architecture in eukaryote, prokaryote and chloroplast.2007

    • Author(s)
      K. Takeyasu, K. Hizume, S. H. Yoshimura
    • Journal Title

      Microsc. Microanal. 13

      Pages: 3-12

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-molecule detection of phosphorylation-induced plasticity changes during ezrin activation.2007

    • Author(s)
      S. H. Yoshimura, K. Takeyasu
    • Journal Title

      FEBS Lett. 581

      Pages: 3536-3571

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping.2007

    • Author(s)
      S. H. Yoshimura, K, Takeyasu
    • Journal Title

      Proc. Natl. Acad. Sci. USA. 104

      Pages: 12755-12760

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Covalent attachment of protein to the tip of a multiwalled carbon nanotube without sidewall decoration.2007

    • Author(s)
      S. H. Yoshimura
    • Journal Title

      J. Appl. Phys. 102

      Pages: 94701-94701

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transcription-coupled Nucleoid Architecture in Bacteria2007

    • Author(s)
      K. Takeyasu
    • Journal Title

      Genes to Cells 12

      Pages: 1141-1152

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chromatin dynamics of unfolding and refolding controlled by the nucleosome repeat length and the linker and core histones2007

    • Author(s)
      K. Takeyasu
    • Journal Title

      Biopolymers 85

      Pages: 295-307

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Topoisomerase II, a scaffold component, promotes chromatin-compaction in vitro in a linker-histone H1-dependent manner2007

    • Author(s)
      K. Hizume, K. Takeyasu
    • Journal Title

      Nuc. Acids Res. 35

      Pages: 2787-2799

    • NAID

      120000896374

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In situ analysis of the higher-order genome structure in a single Escherichia coli cell2007

    • Author(s)
      K. Takeyasu
    • Journal Title

      J. Biotechnol. 133

      Pages: 172-176

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intranuclear Paracrystals Observed in striated Muscle Specific LIM Protein-Deficient Mouse Cardimyocytes2007

    • Author(s)
      K. Takeyasu
    • Journal Title

      Microsc. Res. Tech. 70

      Pages: 50-54

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Atomic force microscopy dissects the hierarchy of genome architecture in eukaryote. prokaryote and chloroplast.2007

    • Author(s)
      S.H.Yoshimura, K.Takeyasu他
    • Journal Title

      Microsc.Microanal. 13・1

      Pages: 3-12

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Topoisomerase II, scaffold component, promotes chromatin compaction in vitro in a linker-histone H1-dependent manner.2007

    • Author(s)
      K.Hizume, K.Takeyasu他
    • Journal Title

      Nucleid Acids Res. 35・8

      Pages: 2787-2799

    • NAID

      120000896374

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Comparative structural biology of the genome: Nano-scale imaging of single nucleus from different kingdoms reveals the chromatin built up on a 40 nm structural unit.2006

    • Author(s)
      T. Kobori, M. Kodama, K. Hizume, S.H. Yoshimura, T Ohtani, K. Takeyasu
    • Journal Title

      J. Electr. Microsc. 55(1)

      Pages: 31-40

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fast-scanning atomic force microscopy revealed the molecular mechanism of DNA cleavage by ApaI endonuclease.2006

    • Author(s)
      M. Yokokawa, S.H. Yoshimura, Y. Naito, T. Ando, A. Yagi, N. Sakai, K. Takeyasu
    • Journal Title

      IEE Proc. Nanobiotechnol 153(4)

      Pages: 60-66

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of glutathione-coupled cantilever for the single-molecule force measurement by scanning force microscopy.2006

    • Author(s)
      S.H. Yoshimura, H. Takahashi, S. Otsuka, K. Takeyasu
    • Journal Title

      FEBS Lett. 580(16)

      Pages: 3961-3965

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fast-scanning atomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL.2006

    • Author(s)
      M. Yokokawa, C. Wada, T. Ando, N. Sakai, A. Yagi, S.H. Yoshimura, K. Takeyasu
    • Journal Title

      EMBO J. 25(19)

      Pages: 4567-4576

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Human ObgH1 and ObgH2 participate in the maintenance of mitochondria and nucleolar architectures.2006

    • Author(s)
      Y. Hirano, R.L. Ohniwa, C. Wada, S.H. Yoshimura, K. Takeyasu
    • Journal Title

      Genes Cells 11(11)

      Pages: 1295-1304

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Transcriptional co-activator PC4, a chromatin-associated protein, induces chromatin condensation.2006

    • Author(s)
      C. Das, K. Hizume, K. Batta, B.R.P. Kumar, S.S. Gadad, S. Ganguly, S. Lorain, A. Verreault, P.. P. Sadhale, K. Takeyasu, T.K. Kundu
    • Journal Title

      Mol. Cell. Biol. 26

      Pages: 8303-8315

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic state of DNA topology is essential for genome condensation in bacteria.2006

    • Author(s)
      R.L. Ohniwa, K. Morikawa, J. Kim, T. Ohta, A. Ishihama, C. Wada, K. Takeyasu,
    • Journal Title

      EMBO J. 25

      Pages: 5591-5602

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of glutathione-coupled cantilever for the single-molecule force measurement by scanning force microscopy2006

    • Author(s)
      S.H.Yoshimura, K.Takeyasu他
    • Journal Title

      FEBS Letter 580・16

      Pages: 3961-3965

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Fast-scanning stomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL2006

    • Author(s)
      S.H.Yoshimura, K.Takeyasu他
    • Journal Title

      EMBO J. 25・19

      Pages: 4567-4576

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Fast-scanning atomic force microscopy revealed the molecular mechanism of DNA cleavage by ApaI endonuclease.2006

    • Author(s)
      S.H.Yoshimura, K.Takeyasu他
    • Journal Title

      IEE Proc.Nonobiotech. 153・4

      Pages: 60-66

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Comparative structural biology of the genome : Nano-scale imaging of single nucleus from different kingdoms reveals the chromatin built up2006

    • Author(s)
      S.H.Yoshimura, K.Takeyasu他
    • Journal Title

      J.Electr.Microsc. 55・1

      Pages: 31-40

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Human ObgH1 and ObgH2 participate in the maintenance of mitochondria and nucleolar architectures.2006

    • Author(s)
      S.H.Yoshimura, K.Takeyasu他
    • Journal Title

      Genes Cells 11・11

      Pages: 1295-1304

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Protective effect of vitamin C against double-strand breaks in reconstituted chromatin visualized by single-molecule observation.2006

    • Author(s)
      K.Takeyasu他
    • Journal Title

      Biophys.J. 90・3

      Pages: 993-999

    • NAID

      120000896373

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Dynamic state of DNA topology is essential for genome condensation in baceteria.2006

    • Author(s)
      K.Takeyasu他
    • Journal Title

      EMBO J. 25・23

      Pages: 5591-5602

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Transcriptional co-activator PC4, a chromatin-associated protein, induces chromatin condensation.2006

    • Author(s)
      K.Takeyasu他
    • Journal Title

      Mol.Cell.Biol. 26・22

      Pages: 8303-8315

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Bacterial nucleoid dynamics : Oxydative stress response in Staphylococcus aureus.2006

    • Author(s)
      K.Takeyasu他
    • Journal Title

      Genes Cells. 11・4

      Pages: 409-423

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Biochemical, molecular genetic and structural analyses of the Staphylococcal nucleoid.2006

    • Author(s)
      K.Takeyasu他
    • Journal Title

      Microscopy and Microanalysis. (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Hydrodynamic radius of circular DNA is larger than that of linear DNA.2006

    • Author(s)
      K.Takeyasu他
    • Journal Title

      Chem. Physics Lett. 418

      Pages: 255-259

    • NAID

      120000896371

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Interaction of Skp1 with CENP-E at the midbody is essential for cytokinesis.2006

    • Author(s)
      K.Takeyasu他
    • Journal Title

      Biochem. Biophys. Res. Commun. 345・1

      Pages: 394-402

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Comparative structural biology of the genome : Nano-scale imaging of single nucleus from different kingdoms reveals the chromatin built up on a 40 nm2006

    • Author(s)
      S.H.Yoshimura 他
    • Journal Title

      Journal of Electron Microscopy (印刷中)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Fast-scanning atomic force microscopy revealed the molecular mechanism of DNA cleavage by ApaI endonuclease.2006

    • Author(s)
      S.H.Yoshimura 他
    • Journal Title

      IEE Proc.Nanobiotech. (印刷中)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Linker histone H1 per se can induce three-dimensional folding of chromatin fiber.2005

    • Author(s)
      K. Hizume, S.H. Yoshimura, K. Takeyasu
    • Journal Title

      Biochemistry 44(39)

      Pages: 12978-12989

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Protective effect of vitamin C against double-strand breaks in reconstituted chromatin visualized by single-molecule observation.2005

    • Author(s)
      Y. Yoshikawa, K. Hizume, Y. Oda, K. Takeyasu, S. Araki, K. Yoshikawa
    • Journal Title

      Biophys. J. 90(3)

      Pages: 993-999

    • NAID

      120000896373

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phase transition in reconstituted chromatin.2005

    • Author(s)
      S.H.Yoshimura, K.Hizume他
    • Journal Title

      Europhys.Lett. 69・6

      Pages: 1024-1030

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Linker histone H1 per se can induce three-dimensional folding of chromatin fiber.2005

    • Author(s)
      K.Hizume, S.H.Yoshimura, 他
    • Journal Title

      Biochemistry 44・39

      Pages: 12978-12989

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Protective effect of vitamin c against double-strand breaks in reconstituted chromatin visualized by sinigle-molecule observation2005

    • Author(s)
      K.Hizume 他
    • Journal Title

      Biophys.J 90・3

      Pages: 993-999

    • Related Report
      2005 Annual Research Report
  • [Presentation] Structural flexibility of importin β facilitates its fast and selective transport through the nuclear pore complex2009

    • Author(s)
      S.H.Yoshimura
    • Organizer
      第32回分子生物学会大会ワークショップ
    • Place of Presentation
      横浜(神奈川県)
    • Year and Date
      2009-12-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] Hydrophobic interaction between importin β and nucleoporins facilitates fast and selective transport through the nuclear pore complex2009

    • Author(s)
      S.H.Yoshimura
    • Organizer
      the American Society for Cell Biology
    • Place of Presentation
      San Diego(アメリカ)
    • Year and Date
      2009-12-07
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structural properties of yeast chromatin fiber examined by AFM and in vitro reconstitution system.2009

    • Author(s)
      K.Hizume
    • Organizer
      International Symposaum on Micro-NanoMechatronics and Human Science 2009
    • Place of Presentation
      名古屋(愛知県)
    • Year and Date
      2009-11-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Hydrophobic interaction between importin β and nucleoporins facilitates fast and selective transport through the nuclear pore complex2009

    • Author(s)
      S.H. Yoshimura
    • Organizer
      the EMBO conference series on Nuclear Structure and Dynamics
    • Place of Presentation
      L'Isle sur la Sorgue(France)
    • Year and Date
      2009-10-02
    • Related Report
      2009 Final Research Report
  • [Presentation] Hydrophobic interaction between importin β and nucleoporins facilitates fast and selective transport through the nuclear pore complex2009

    • Author(s)
      S.H.Yoshimura
    • Organizer
      the EMBO conference series on Nuclear Structure and Dynamics
    • Place of Presentation
      L'Isle sur la Sorgue(フランス)
    • Year and Date
      2009-10-02
    • Related Report
      2009 Annual Research Report
  • [Presentation] Single-molecule and millisecond-order kinetic analysis of the SR Ca^<2+> -Atoase by Fast-scanning AFM2009

    • Author(s)
      K.Takeyasu
    • Organizer
      The 11^<th> Intemational Scanning Probe Microscopy Conference
    • Place of Presentation
      Madrid(スペイン)
    • Year and Date
      2009-06-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] New Applications for AFM and Optical Trapping in Cell Biology2008

    • Author(s)
      S. H. Yoshimura
    • Organizer
      48th The American Society for Cell Biology
    • Place of Presentation
      San Francisco, USA
    • Year and Date
      2008-12-01
    • Related Report
      2008 Annual Research Report
  • [Presentation] Genome/Chromatin Dynamics Revealed by Atomic force Microscopy2008

    • Author(s)
      K. Takeyasu
    • Organizer
      International Scanning Probe Microscopy conference 2008
    • Place of Presentation
      Seattle, USA
    • Year and Date
      2008-06-22
    • Related Report
      2008 Annual Research Report
  • [Presentation] Nano-scale imaging and single molecule manipulation techniques for the study of nuclear dynamics.2008

    • Author(s)
      K. Takeyasu, S. H. Yoshimura
    • Organizer
      The 9th AEARU Workshop on Molecular Biology and Biotechnology
    • Place of Presentation
      Hong Kong, China
    • Year and Date
      2008-03-26
    • Related Report
      2007 Annual Research Report
  • [Presentation] Advances in Single-molecular Research for Biology & Nanoscience2008

    • Author(s)
      S.H. Yoshimura, K. Takeyasu
    • Organizer
      Xth Annual Linz Winter Workshop
    • Place of Presentation
      Linz (Austria)
    • Year and Date
      2008-02-17
    • Related Report
      2009 Final Research Report
  • [Presentation] Advances in Single-molecular Research for Biology & Nanoscience2008

    • Author(s)
      S. H. Yoshimura, K. Takeyasu
    • Organizer
      Xth Annual Linz Winter Workshop
    • Place of Presentation
      Linz, Austria
    • Year and Date
      2008-02-17
    • Related Report
      2007 Annual Research Report
  • [Presentation] Nano-scale Imaging aad single-molecule manipulation techniques for uncovering the nuclear architecture and dynamics.2008

    • Author(s)
      K. Takeyasu, S. H. Yoshimura
    • Organizer
      Xth Asian Conference on Transcription and Transcription Assembly
    • Place of Presentation
      Bangarol, India
    • Year and Date
      2008-01-15
    • Related Report
      2007 Annual Research Report
  • [Presentation] Nano-biology of cell nucleus2007

    • Author(s)
      K. Takeyasu, S. H. Yoshimura, K. Hizume
    • Organizer
      第30回日本分子生物学会第80回日本生化学会合同大会
    • Place of Presentation
      横浜
    • Year and Date
      2007-12-12
    • Related Report
      2007 Annual Research Report
  • [Presentation] Sub-nuclear structures and their dynamics revealed by a set of nuclear antibodies2007

    • Author(s)
      S. H. Yoshimura, K. Takeyasu
    • Organizer
      American Society for Cell Biology-47th annual meeting
    • Place of Presentation
      Washington DC, JSA
    • Year and Date
      2007-12-03
    • Related Report
      2007 Annual Research Report
  • [Presentation] Single-molecule force measurement revealed the characteristics of proteintransport through Nuclear Pore Complex2007

    • Author(s)
      K. Takeyasu, S. H. Yoshimura
    • Organizer
      American Society for Cell Biology-47th annual meeting
    • Place of Presentation
      Washington DC, USA
    • Year and Date
      2007-12-03
    • Related Report
      2007 Annual Research Report
  • [Presentation] Single-molecule imaging. force measurement and fluorescence observationreveal protein and chromosome dydamics around the nuclear envelope2007

    • Author(s)
      K. Takeyasu, S. H. Yoshimura
    • Organizer
      International Symposium on Micro-NanoMechatronics and Human Science
    • Place of Presentation
      Nagoya, Japan
    • Year and Date
      2007-11-12
    • Related Report
      2007 Annual Research Report
  • [Presentation] 1分子観察・計測・操作技術とバイオ操作2007

    • Author(s)
      吉村成弘
    • Organizer
      日本機会学会先端技術フォーラム
    • Place of Presentation
      大阪
    • Year and Date
      2007-10-13
    • Related Report
      2007 Annual Research Report
  • [Presentation] LEMタンパク質MAN1の細胞周期依存的リン酸化とその機能2007

    • Author(s)
      吉村成弘, 竹安邦夫
    • Organizer
      第7回核ダイナミクス研究会
    • Place of Presentation
      札幌
    • Year and Date
      2007-09-26
    • Related Report
      2007 Annual Research Report
  • [Presentation] 核膜孔複合体を介した物質輸送の1分子解析2007

    • Author(s)
      竹安邦夫, 吉村成弘
    • Organizer
      第7回核ダイナミクス研究会
    • Place of Presentation
      札幌
    • Year and Date
      2007-09-26
    • Related Report
      2007 Annual Research Report
  • [Presentation] The tudor domain of LBR plays an important role for its mobility in the nuclear envelope2007

    • Author(s)
      S. H. Yoshimura, K. Takeyasu
    • Organizer
      EMBO Conference Series on Nuclear Structure and Dvnamics
    • Place of Presentation
      Montpellier, France
    • Year and Date
      2007-09-03
    • Related Report
      2007 Annual Research Report
  • [Presentation] Single-molecule structural and functional analyses of protein transport through the nuclear pore complex.2006

    • Author(s)
      S.H. Yoshimura
    • Organizer
      The VIIIth symposium on SPM and organic materials
    • Place of Presentation
      Dresden (Germany)
    • Year and Date
      2006-09-28
    • Related Report
      2009 Final Research Report
  • [Book] Biopolymer Research Trends2009

    • Author(s)
      K. Hizume, S. H. Yoshimura, K. Takeyasu
    • Total Pages
      222
    • Publisher
      Noba Science Publishers
    • Related Report
      2008 Annual Research Report
  • [Book] Nuclear Dynamics2006

    • Author(s)
      S.H.Yoshimura他
    • Total Pages
      280
    • Publisher
      Springer
    • Related Report
      2006 Annual Research Report
  • [Book] Nuclear Dynamics2006

    • Author(s)
      S.H.Yoshimura
    • Publisher
      Springer Verlag(未定)
    • Related Report
      2005 Annual Research Report
  • [Remarks]

    • URL

      http://www/lif.kyoto-u.ac.jp/labs/chrom/index.html

    • Related Report
      2009 Final Research Report
  • [Remarks]

    • URL

      http://www.lif.kyoto-u.acjp/labs.chrom.index.html

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2005-04-01   Modified: 2018-03-28  

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