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A mathematical model of the retina based on neurophysiological mechanisms

Research Project

Project/Area Number 17500195
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioinformatics/Life informatics
Research InstitutionAichi Prefectural University

Principal Investigator

KAMIYAMA Yoshimi  Aichi Prefectural University, Faculty of Information Science and Technology, Associate Professor (70233963)

Project Period (FY) 2005 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,730,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥330,000)
Fiscal Year 2007: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2006: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2005: ¥1,300,000 (Direct Cost: ¥1,300,000)
KeywordsRetina / Neuron Model / Neuroinformatics / Rod Photoreceptor / Retinal Ganglion Cell / Neural Spikes / 数理モデル / シミュレーション / イオンチャネル / ニューロン / 杆体
Research Abstract

The vertebrate retina has been thought to be a window to the brain because of its accessibility and suitability for neuroscientific investigation. It is thought to be one of the few parts of the vertebrate brain where we can reasonably explain its purpose and how it works. The retina is an ideal model of an information processing neural network, describing how neurons interact to codify and process visual information. Over the last decade, we have developed mathematical models of retinal neurons based on biophysical details. These models can reveal what happens if a particular ionic current is active or inactive. One can then ask what advantages are given on the visual system by having the particular class of ion channel present in the neuron.
In this study, we analyzed the underlying mechanisms of a rod photoreceptor that behaves as a bandpass filter. The simulated frequency response revealed that a single rod behaves as a bandpass filter whose characteristics are affected by the stimulus strength and frequency. We analyzed the contribution of individual ionic currents to bandpass filtering and found that the filtering of small signals is largely regulated by the calcium-dependent currents, whereas the filtering of large signals is regulated by the hyperpolarization-activated current. The major discovery was that the kinetics of the ionic currents, IK(Ca), ICl(Ca), and Ih characterize the bandpass filtering of rod signals. We also developed a stochastic model of spike generation in retinal ganglion cells. The stochastic model succeeded to reproduce precise and reliable spikes to flucutuating current injection. We found the spike timing variability was much influenced by the outward K currents, IKv and IA.

Report

(4 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (49 results)

All 2008 2007 2006 2005

All Journal Article (25 results) (of which Peer Reviewed: 2 results) Presentation (24 results)

  • [Journal Article] 網膜桿体視細胞ネットワークの数理モデル2007

    • Author(s)
      宮本 侑典
    • Journal Title

      電子情報通信学会技術研究報告 107

      Pages: 53-58

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] グリッドによる神経回路モデルのシミュレーション2007

    • Author(s)
      田中 栄二
    • Journal Title

      情報科学技術フォーラム講演論文集 FIT2007

      Pages: 481-482

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] X型網膜神経節細胞の空間情報処理モデルに関する研究2007

    • Author(s)
      古澤 優希
    • Journal Title

      情報科学技術フォーラム講演論文集 FIT2007

      Pages: 483-484

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] 網膜桿体視細胞ネットワークの2次元モデル2007

    • Author(s)
      宮本 侑典
    • Journal Title

      情報科学技術フォーラム講演論文集 FIT2007

      Pages: 485-486

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] 網膜神経節細胞におけるイオンチャネルの確率論的特性とスパイク発火特性2007

    • Author(s)
      松井 遼
    • Journal Title

      情報科学技術フォーラム講演論文集 FIT2007

      Pages: 487-488

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A mathematical model of the retinal rod network2007

    • Author(s)
      Yusuke, Miyamoto, Yoshimi, Kamiyama
    • Journal Title

      IEICE Technical Report NC2007-80

      Pages: 53-58

    • NAID

      110006549434

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Neural circuit simulation on the Grid2007

    • Author(s)
      Eiji, Tanaka, Yoshimi, Kamiyama
    • Journal Title

      The Proceeding of FIT2007

      Pages: 481-482

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A model of spatio-temporal processing in X retinal ganglion cell2007

    • Author(s)
      Yuki, Furusawa, Yoshimi, Kamiyama
    • Journal Title

      The Proceeding of FIT2007

      Pages: 483-484

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A mathematical model of retinal rod photoreceptor network2007

    • Author(s)
      Yusuke, Miyamoto, Yoshimi, Kamiyama
    • Journal Title

      The Proceeding of FIT2007

      Pages: 485-486

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Ion channel stochasticity and spike firing characteristics of retinal ganglion cell2007

    • Author(s)
      Ryo, Matsui, Yoshimi, Kamiyama
    • Journal Title

      The Proceeding of FIT2007

      Pages: 487-488

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] 網膜桿体視細胞ネットワークの数理モデル2007

    • Author(s)
      宮本侑典
    • Journal Title

      電子情報通信学会技術研究報告 107

      Pages: 53-58

    • Related Report
      2007 Annual Research Report
  • [Journal Article] グリッドによる神経回路モデルのシミュレーション2007

    • Author(s)
      田中栄二
    • Journal Title

      情報科学技術フォーラム講演論文集 FIT2007

      Pages: 481-482

    • Related Report
      2007 Annual Research Report
  • [Journal Article] X型網膜神経節細胞の空間情報処理モデルに関する研究2007

    • Author(s)
      古澤優希
    • Journal Title

      情報科学技術フォーラム講演論文集 FIT2007

      Pages: 483-484

    • Related Report
      2007 Annual Research Report
  • [Journal Article] 網膜桿体視細胞ネットワークの2次元モデル2007

    • Author(s)
      宮本侑典
    • Journal Title

      情報科学技術フォーラム講演論文集 FIT2007

      Pages: 485-486

    • Related Report
      2007 Annual Research Report
  • [Journal Article] 網膜神経節細胞におけるイオンチャネルの確率論的特性とスパイク発火特性2007

    • Author(s)
      松井遼
    • Journal Title

      情報科学技術フォーラム講演論文集 FIT2007

      Pages: 487-488

    • Related Report
      2007 Annual Research Report
  • [Journal Article] イオンチャネルの確率論的特性に基づく網膜神経節細胞のスパイク生成モデル2006

    • Author(s)
      松井 遼
    • Journal Title

      JNNS2006講演論文

      Pages: 124-125

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Square-wavejerkを再現する固視微動の数理モデル2006

    • Author(s)
      小濱 剛
    • Journal Title

      JNNS2006講演論文集

      Pages: 158-159

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A model of retinal ganglion cell spike generation based on ion channel stochasticity2006

    • Author(s)
      Ryo, Matsui, Yoshimi, Kamiyama
    • Journal Title

      The Proceeding of the 2006 Annual Conference of the Japanese Neural Network Society

      Pages: 124-125

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A mathematical model of square-wave jerks during fixation2006

    • Author(s)
      Takeshi, Kohama, Ryota, Shinojima ,Yoshimi, Kamiyama
    • Journal Title

      The Proceeding of the 2006 Annual -2onference of the Japanese Neural Vetwork Society

      Pages: 158-159

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Analysis of the band-pass filtering of the retimal rod by the ionic current model2006

    • Author(s)
      Kamiyama, Y
    • Journal Title

      Neuroscience Research 55・S1

    • Related Report
      2006 Annual Research Report
  • [Journal Article] イオンチャネルの確率論的特性に基づく網膜神経節細胞のスパイク生成モデル2006

    • Author(s)
      松井遼
    • Journal Title

      JNNS2006講演論文集

      Pages: 124-125

    • Related Report
      2006 Annual Research Report
  • [Journal Article] グリッドによる神経回路モデルのシュミレーション2006

    • Author(s)
      田中栄二
    • Journal Title

      平成18年度電気関係学会東海支部連合大会

      Pages: 168-168

    • Related Report
      2006 Annual Research Report
  • [Journal Article] イオンチャネルの確率論的特性に基づく網膜神経節細胞モデル2006

    • Author(s)
      松井遼
    • Journal Title

      平成18年度電気関係学会東海支部連合大会

      Pages: 170-170

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 網膜杵体視細胞ネットワークのハイパスフィルタ特性のシミュレーション解析2006

    • Author(s)
      神山 斉己
    • Journal Title

      第83回日本生理学会大会

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Simulation analysis of the spatio-temporal filtering properties of the rod network by the ionic current model2005

    • Author(s)
      Kamiyama, Y.
    • Journal Title

      ARVO 2005 Annual Meeting

      Pages: 4542-4542

    • Related Report
      2005 Annual Research Report
  • [Presentation] A grid porta for retinal modeling and simulation2008

    • Author(s)
      Yoshimi Kamiyama
    • Organizer
      RIKEN-CABMEN Joint Workshop on Developing Web Services for Neurophysiological Data
    • Place of Presentation
      理化学研究所,和光市
    • Year and Date
      2008-03-18
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A grid portal for retinal modeling and simulation2008

    • Author(s)
      Yoshimi Kamiyama
    • Organizer
      RIKEN-CARMEN Joint Workshop on Developing Web Services for Neurophysiological Data
    • Place of Presentation
      理化学研究所,和光市
    • Year and Date
      2008-03-18
    • Related Report
      2007 Annual Research Report
  • [Presentation] A grid portal for retinal modeling and simulation2008

    • Author(s)
      Yoshimi, Kamiyama
    • Organizer
      RIKEN-CARMEN Joint Workshop on Developing Web Services for Neurophysiological Data
    • Place of Presentation
      Wako, Saitama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Simulation analysis of theband-pass filtering of the rod network2007

    • Author(s)
      Yoshimi Kamiyama
    • Organizer
      European Retina Meeting 2007
    • Place of Presentation
      Frankfurt,Germany
    • Year and Date
      2007-10-04
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Simulation analysis of the band-pass filtering of the rod network2007

    • Author(s)
      Yoshimi Kamiyama
    • Organizer
      European Retina Meeting 2007
    • Place of Presentation
      Frankfurt, Germany
    • Year and Date
      2007-10-04
    • Related Report
      2007 Annual Research Report
  • [Presentation] A mathematical model of retinal rod photo receptor network2007

    • Author(s)
      Yusuke Miyamoto
    • Organizer
      Neuro2007
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-09-12
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A model of spatiotemporal processing in X retinal gangli on cell2007

    • Author(s)
      Yuki Furusawa
    • Organizer
      Neuro2007
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-09-12
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A mathematical model of retinal rod photoreceptor network2007

    • Author(s)
      Yusuke Miyamoto
    • Organizer
      Neuro2007
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-09-12
    • Related Report
      2007 Annual Research Report
  • [Presentation] A model of spatiotemporal processing in X retinal ganglion cell2007

    • Author(s)
      Yuki Furusawa
    • Organizer
      Neuro2007
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-09-12
    • Related Report
      2007 Annual Research Report
  • [Presentation] Computational modeling of retinal neurons based on cell physiology2007

    • Author(s)
      Yoshimi Kamiyama
    • Organizer
      NBNI2007
    • Place of Presentation
      Jeju City,Korea
    • Year and Date
      2007-07-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Simulation analysis of the band-pass filtering of the rod network2007

    • Author(s)
      Yoshimi, Kamiyama
    • Organizer
      European Retina Meeting 2007
    • Place of Presentation
      Franfurt, Germany
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A mathematical model of retinal rod photoreceptor network2007

    • Author(s)
      Yusuke, Miyamoto, Yoshimi, Kamiyama
    • Organizer
      Neuro2007
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A model of spatiotemporal processing in X retinal ganglion cell2007

    • Author(s)
      Yuki, Furusawa, Yoshimi, Kamiyama
    • Organizer
      Neuro2007
    • Place of Presentation
      Yokohama
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Computational modeling of retinal neurons based on cell physiology2007

    • Author(s)
      Yoshimi, Kamiyama
    • Organizer
      NBNI2007
    • Place of Presentation
      Jeju City, Korea
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] 網膜秤体視細胞ネットワークのハイパスフィルタ特性のシミュレーション解析2006

    • Author(s)
      神山 斉己
    • Organizer
      第83回日本生理学会大会
    • Place of Presentation
      群馬県民会館
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Analysis of the band-pass filtering of the retinal rod by the ionic current model2006

    • Author(s)
      Yoshimi Kamiyama
    • Organizer
      第29回日本神経科学大会
    • Place of Presentation
      国立京都国際会館
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] グリッドによる神経回路モデルのシミュレーション2006

    • Author(s)
      田中 栄二
    • Organizer
      平成18年度電気関係学会東海支部連合大会
    • Place of Presentation
      岐阜大学
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] イオンチャネルの確率論的特性に基づく網膜神経節細胞のスパイク生成モデル2006

    • Author(s)
      松井 遼
    • Organizer
      平成18年度電気関係学会東海支部連合大会
    • Place of Presentation
      岐阜大学
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Simulation analysis of the high-pass filtering of the rod network in the retina2006

    • Author(s)
      Yoshimi, Kamiyama
    • Organizer
      The 83rd Annual Meeting of the Physiological Society in Japan
    • Place of Presentation
      Gunma
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Neural circuit simulation on the Grid2006

    • Author(s)
      Eiji, Tanaka ,Yoshimi, Kamiyama
    • Organizer
      The 2006 Joint Convention of Tokai Section
    • Place of Presentation
      Gifu
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A model of retinal ganglion cell based ion channel stochasticity2006

    • Author(s)
      Ryo, Matsui, Yoshimi, Kamiyama
    • Organizer
      The 2006 Joing Convention of Tokai Section
    • Place of Presentation
      Gifu
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Analysis of the band-pass filtering of the retina rod by the ionic current model2006

    • Author(s)
      Yoshimi, Kamiyama
    • Organizer
      The 29th Annual Meeting of the Japan Neuroscience Society
    • Place of Presentation
      Kyoto
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Simulation analysis of thes patio-temporal filtering properties of the rod network by the ionic current model2005

    • Author(s)
      Yoshimi Kamiyama
    • Organizer
      ARUO 2005 Annual Meeting
    • Place of Presentation
      Florida,USA
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Simulation analysis of the spatio-temporal filtering properties of the rod network by the ionic current mode2005

    • Author(s)
      Yoshimi, Kamiyama
    • Organizer
      ARVO 2005 Annual Meeting
    • Place of Presentation
      Florida, USA
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2005-04-01   Modified: 2016-04-21  

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