• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Opto-control of apoptosis and its molecular basis

Research Project

Project/Area Number 17H05001
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionKyoto University

Principal Investigator

Nakasone Yusuke  京都大学, 理学研究科, 助教 (00613019)

Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥26,780,000 (Direct Cost: ¥20,600,000、Indirect Cost: ¥6,180,000)
Fiscal Year 2020: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2019: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2018: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2017: ¥17,680,000 (Direct Cost: ¥13,600,000、Indirect Cost: ¥4,080,000)
Keywords細胞死 / 光操作 / 分子間反応 / 過渡回折格子法 / LOVドメイン / Caspase8 / 反応ダイナミクス / アポトーシス / 光制御 / Caspase / 光センサー / 光遺伝学 / 光解離反応 / 光センサータンパク質 / 分子ダイナミクス
Outline of Final Research Achievements

In recent years, the study of optogenetics and light-responsive molecules has become so popular that we are now able to manipulate diverse biological phenomena with light. Though this technology has led to the discovery of new molecular networks in neuroscience and many other fields, the signaling mechanisms has not been clarified at the molecular level in many cases. The main reason is the lack of sensitive and time-resolved methods for detecting intra- and inter-molecular reactions. In this study, we have established a new reaction detection method by combining a unique spectroscopic method (transient grating method) with various opto-control techniques. Using this method, we investigated the molecular mechanisms of apoptosis. We have also applied this method to light-responsive artificial molecules, promoting the elucidation of intermolecular reactions that have been difficult to detect using conventional techniques.

Academic Significance and Societal Importance of the Research Achievements

アポトーシスは生命の恒常性の維持に必須であり、その異常は癌や脳機能障害など様々な疾患を引き起こす。本課題では、光で会合するタンパク質をアポトーシス誘導因子(Caspase8)に遺伝学的に結合したところ、光照射下でアポトーシスを起こす細胞数が増えることを確認した。これは副作用の少ない治療法の開発にも役立つ知見であるが、細胞死の誘導効率が低いため、実用化には今後の最適化が必要である。また光依存的な反応を分子レベルで捉える新手法の開発を行い、光会合反応や光応答性DNAの反応検出を実施した。この手法により未開拓であった様々な生体分子反応の解明が可能となるため、今後の生命科学研究への応用が期待される。

Report

(5 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (28 results)

All 2021 2020 2019 2018 2017

All Journal Article (12 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 12 results,  Open Access: 2 results) Presentation (14 results) (of which Int'l Joint Research: 1 results,  Invited: 4 results) Book (2 results)

  • [Journal Article] Enzymatic activity of the blue light‐regulated phosphodiesterase BlrP1 from Klebsiella pneumoniae shows a nonlinear dependence on light intensity2021

    • Author(s)
      Shibata Kosei、Nakasone Yusuke、Terazima Masahide
    • Journal Title

      FEBS Letters

      Volume: - Issue: 10 Pages: 1473-1479

    • DOI

      10.1002/1873-3468.14073

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Time-resolved detection of SDS-induced conformational changes in α-synuclein by a micro-stopped-flow system2021

    • Author(s)
      Takaramoto Shunki、Nakasone Yusuke、Sadakane Kei、Maruta Shinsaku、Terazima Masahide
    • Journal Title

      RSC Advances

      Volume: 11 Issue: 2 Pages: 1086-1097

    • DOI

      10.1039/d0ra09614h

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Photoreaction Dynamics of a Full-Length Protein YtvA and Intermolecular Interaction with RsbRA2020

    • Author(s)
      Choi Seokwoo、Nakasone Yusuke、Hellingwerf Klaas J.、Terazima Masahide
    • Journal Title

      Biochemistry

      Volume: 59 Issue: 50 Pages: 4703-4710

    • DOI

      10.1021/acs.biochem.0c00888

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Wavelength-Dependent Photoreaction of PYP from Rhodobacter capsulatus2020

    • Author(s)
      Kim Suhyang、Nakasone Yusuke、Takakado Akira、Yamazaki Yoichi、Kamikubo Hironari、Terazima Masahide
    • Journal Title

      Biochemistry

      Volume: 59 Issue: 51 Pages: 4810-4821

    • DOI

      10.1021/acs.biochem.0c00821

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Time-Resolved Study of Interprotein Signaling Process of a Blue Light Sensor PapB-PapA Complex2019

    • Author(s)
      Nakasone, Y., Kikukawa, K., Masuda, S. and Terazima, M.
    • Journal Title

      J. Phys. Chem. B

      Volume: in press Issue: 15 Pages: 3210-3218

    • DOI

      10.1021/acs.jpcb.9b00196

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Time-Resolved Diffusion Detection with Microstopped Flow System2019

    • Author(s)
      Nakasone Yusuke、Takaramoto Shunki、Terazima Masahide
    • Journal Title

      Analytical Chemistry

      Volume: 91 Issue: 18 Pages: 11987-11993

    • DOI

      10.1021/acs.analchem.9b02897

    • NAID

      120006731124

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photoreaction Dynamics of Full-Length Phototropin from Chlamydomonas reinhardtii2019

    • Author(s)
      Nakasone Yusuke、Ohshima Masumi、Okajima Koji、Tokutomi Satoru、Terazima Masahide
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 123 Issue: 51 Pages: 10939-10950

    • DOI

      10.1021/acs.jpcb.9b09685

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii2018

    • Author(s)
      Nakasone Yusuke、Ohshima Masumi、Okajima Koji、Tokutomi Satoru、Terazima Masahide
    • Journal Title

      J.Phys.Chem.B

      Volume: 122 Issue: 6 Pages: 1801-1815

    • DOI

      10.1021/acs.jpcb.7b10266

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sequential DNA Binding and Dimerization Processes of the Photosensory Protein EL2222018

    • Author(s)
      Takakado Akira、Nakasone Yusuke、Terazima Masahide
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 10 Pages: 1603-1610

    • DOI

      10.1021/acs.biochem.7b01206

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photoreaction of BlrP1: the role of a nonlinear photo-intensity sensor2018

    • Author(s)
      Shibata Kosei、Nakasone Yusuke、Terazima Masahide
    • Journal Title

      Phys.Chem.Chem.Phys.

      Volume: 20 Issue: 12 Pages: 8133-8142

    • DOI

      10.1039/c7cp08436f

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Light-Induced Conformational Changes of LOV2-Kinase and the Linker Region in Arabidopsis Phototropin22017

    • Author(s)
      Takakado Akira、Nakasone Yusuke、Okajima Koji、Tokutomi Satoru、Terazima Masahide
    • Journal Title

      J.Phys.Chem.B

      Volume: 121 Issue: 17 Pages: 4414-4421

    • DOI

      10.1021/acs.jpcb.7b01552

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photoinduced dimerization of a photosensory DNA-binding protein EL222 and its LOV domain2017

    • Author(s)
      Takakado Akira、Nakasone Yusuke、Terazima Masahide
    • Journal Title

      Phys.Chem.Chem.Phys.

      Volume: 19 Issue: 36 Pages: 24855-24865

    • DOI

      10.1039/c7cp03686h

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Presentation] 夾雑微小空間におけるタンパク質の動的挙動2020

    • Author(s)
      中曽根祐介
    • Organizer
      分子夾雑の生命化学 第4回領域会議
    • Related Report
      2020 Annual Research Report
  • [Presentation] 分子クラウディング環境における光活性化アデニル酸シクラーゼの揺らぎと機能2020

    • Author(s)
      中曽根祐介
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Fluctuation and reaction dynamics of a light sensor protein in crowding environment2019

    • Author(s)
      中曽根祐介
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 光で捉える生体分子の揺らぎ・ダイナミクス ―相分離を生体分子の反応場として理解する―2019

    • Author(s)
      中曽根祐介
    • Organizer
      第4回LLPS研究会・ASUKA若手交流会2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] 分子夾雑系における光センサータンパク質の揺らぎ・反応ダイナミクス2019

    • Author(s)
      中曽根祐介
    • Organizer
      新学術領域「分子夾雑の生命化学」第2回関西地区シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] 光で捉える生体分子の揺らぎ・ダイナミクス2019

    • Author(s)
      中曽根祐介
    • Organizer
      分子研所長招聘研究会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 光活性化アデニル酸シクラーゼの光反応ダイナミクス2019

    • Author(s)
      中曽根祐介
    • Organizer
      日本化学会第99春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光センサータンパク質phototropinの光反応ダイナミクス2018

    • Author(s)
      中曽根祐介
    • Organizer
      第20回 日本光生物学協会 年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Diversity of photochemical reactions of Flavin-based photoreceptors2018

    • Author(s)
      中曽根祐介
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 時間分解拡散法で捉える蛋白質反応2018

    • Author(s)
      中曽根祐介
    • Organizer
      研究会「2030年の生命分子科学を語る!」
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Time-resolved study of protein reactions using the transient grating method combined with a stopped-flow apparatus2018

    • Author(s)
      中曽根祐介
    • Organizer
      新学術領域「動的秩序と機能」第6回国際シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 光センサータンパク質phototropinの光反応と多様性2018

    • Author(s)
      中曽根祐介
    • Organizer
      日本化学会 第98春期年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 拡散・揺らぎの時間分解検出に基づくタンパク質機能の分子論的理解2017

    • Author(s)
      中曽根祐介
    • Organizer
      第40回溶液化学プレシンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] ストップトフローと過渡回折格子法を組み合わせた蛋白質反応検出法2017

    • Author(s)
      中曽根祐介
    • Organizer
      第11回分子科学討論会
    • Related Report
      2017 Annual Research Report
  • [Book] 月刊化学2019

    • Author(s)
      中曽根祐介
    • Total Pages
      2
    • Publisher
      株式会社 化学同人
    • Related Report
      2018 Annual Research Report
  • [Book] 分光研究 第67巻 第2号2018

    • Author(s)
      中曽根祐介
    • Total Pages
      3
    • Publisher
      日本分光学会
    • Related Report
      2018 Annual Research Report

URL: 

Published: 2017-04-28   Modified: 2022-01-27  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi