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Advanced proteomic analysis of signaling pathays mediated by Parkinson's disease-associated kinase PINK1

Research Project

Project/Area Number 17K08635
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field General medical chemistry
Research InstitutionThe University of Tokushima

Principal Investigator

KOSAKO Hidetaka  徳島大学, 先端酵素学研究所, 教授 (10291171)

Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsシグナル伝達 / プロテオーム / PINK1 / パーキンソン病 / キナーゼ / 質量分析 / TMT / IP-MS / Parkin / オートファジー / リン酸化 / PRM / ミトコンドリア / 相互作用 / LC-MS/MS / Phos-tag
Outline of Final Research Achievements

The serine/threonine kinase PINK1 and the E3 ubiquitin ligase Parkin are known to be causative gene products of familial Parkinson's disease. Recently, it has been shown that PINK1 and Parkin cooperate to induce autophagic degradation of damaged mitochondria. In this study, we have performed multiplex quantitative phosphoproteomic analysis and large-scale interactome analysis by immunoprecipitation-mass spectrometry to elucidate mechanisms of PINK1 complex formation on damaged mitochondria and signaling pathways downstream of PINK1. As a result, we found a mitochondrial outer membrane protein that is a direct substrate of PINK1 and interacts with PINK1.

Academic Significance and Societal Importance of the Research Achievements

家族性パーキンソン病の原因遺伝子産物であるPINK1とParkinがオートファジーによってミトコンドリアの品質管理を行う仕組みの概要が最近明らかになったが、従来の細胞生物学や分子生物学を基盤とする研究からは、その全体像を理解する上で十分な知見が得られていなかった。本研究において最先端のプロテオミクス技術を駆使することにより、PINK1が形成する複合体の構成因子とリン酸化する基質を大規模に同定することができた。本研究で開発した技術は他の疾患原因キナーゼにも応用可能であり、汎用性が高い技術である。

Report

(5 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (17 results)

All 2020 2019 2018 2017 Other

All Journal Article (9 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 9 results,  Open Access: 5 results) Presentation (7 results) (of which Int'l Joint Research: 3 results,  Invited: 6 results) Remarks (1 results)

  • [Journal Article] Mass spectrometry-based methods for analysing the mitochondrial interactome in mammalian cells2019

    • Author(s)
      Koshiba Takumi、Kosako Hidetaka
    • Journal Title

      The Journal of Biochemistry

      Volume: 167 Issue: 3 Pages: 225-231

    • DOI

      10.1093/jb/mvz090

    • NAID

      120006959753

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Parkin‐mediated ubiquitylation redistributes MITOL/March5 from mitochondria to peroxisomes2019

    • Author(s)
      Koyano Fumika、Yamano Koji、Kosako Hidetaka、Kimura Yoko、Kimura Mayumi、Fujiki Yukio、Tanaka Keiji、Matsuda Noriyuki
    • Journal Title

      EMBO reports

      Volume: 20 Issue: 12

    • DOI

      10.15252/embr.201947728

    • NAID

      120006942558

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Parkin recruitment to impaired mitochondria for nonselective ubiquitylation is facilitated by MITOL2019

    • Author(s)
      Koyano Fumika、Yamano Koji、Kosako Hidetaka、Tanaka Keiji、Matsuda Noriyuki
    • Journal Title

      Journal of Biological Chemistry

      Volume: 294 Issue: 26 Pages: 10300-10314

    • DOI

      10.1074/jbc.ra118.006302

    • NAID

      120006959752

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phosphorylation-mediated activation of mouse Xkr8 scramblase for phosphatidylserine exposure2019

    • Author(s)
      Sakuragi T, Kosako H, Nagata S
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 116 Issue: 8 Pages: 2907-2912

    • DOI

      10.1073/pnas.1820499116

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phosphoproteomic identification and functional characterization of protein kinase substrates by 2D-DIGE and Phos-tag PAGE2019

    • Author(s)
      Motani K, Kosako H
    • Journal Title

      Biochim Biophys Acta Proteins Proteomics

      Volume: 1867 Issue: 1 Pages: 57-61

    • DOI

      10.1016/j.bbapap.2018.06.002

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Baicalein disturbs the morphological plasticity and motility of breast adenocarcinoma cells depending on the tumour microenvironment.2018

    • Author(s)
      Terabayashi T., Hanada K., Motani K., Kosako H., Yamaoka M., Kimura T. and Ishizaki T.
    • Journal Title

      Genes to Cells

      Volume: 印刷中 Issue: 6 Pages: 466-479

    • DOI

      10.1111/gtc.12584

    • NAID

      130007811814

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Activation of stimulator of interferon genes (STING) induces ADAM17-mediated shedding of the immune semaphorin SEMA4D.2018

    • Author(s)
      Motani, K.*, and Kosako, H.
    • Journal Title

      J. Biol. Chem.

      Volume: 印刷中 Issue: 20 Pages: 7717-7726

    • DOI

      10.1074/jbc.ra118.002175

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] The autophagy receptor ALLO-1 and the IKKE-1 kinase control clearance of paternal mitochondria in Caenorhabditis elegans.2018

    • Author(s)
      M. Sato, K. Sato, K. Tomura, H. Kosako and K. Sato
    • Journal Title

      Nature Cell Biology

      Volume: 20 Issue: 1 Pages: 81-91

    • DOI

      10.1038/s41556-017-0008-9

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Functional analysis of disease-associated protein kinases using phosphoproteomic technologies including Phos-tag2017

    • Author(s)
      小迫英尊, 茂谷康
    • Journal Title

      Electrophoresis Letters

      Volume: 61 Issue: 2 Pages: 53-57

    • DOI

      10.2198/electroph.61.53

    • NAID

      130006207358

    • ISSN
      2189-2628, 2189-2636
    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] 最先端プロテオミクス技術を用いた疾患に関与するシグナル伝達機構の解明2020

    • Author(s)
      小迫 英尊
    • Organizer
      第93回日本生化学会大会(招待講演)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] BioID-Based Screening of Biotinylation Sites Globally Identifies STING Interactors2019

    • Author(s)
      Kou Motani and Hidetaka Kosako
    • Organizer
      Keystone Symposia "Proteomics and its Application to Translational and Precision Medicine"
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 線虫遺伝学Xプロテオミクスのコラボ:父性オルガネラオートファジー制御機構の解明を目指して2019

    • Author(s)
      佐藤美由紀、佐藤健、小迫英尊
    • Organizer
      第19回日本蛋白質科学会年会 第71回日本細胞生物学会大会 合同年次大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Global identification and functional characterization of protein kinase substrates using various phosphoproteomic technologies2018

    • Author(s)
      Hidetaka Kosako
    • Organizer
      MSP2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 疾患に関与する細胞内情報伝達機構を解明するためのリン酸化プロテオミクス技術2018

    • Author(s)
      小迫英尊
    • Organizer
      日本質量分析学会・日本プロテオーム学会2018年合同大会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Quantitative interactome and phosphoproteome analysis identifies novel signaling components of Parkinson's disease-associated kinase PINK1.2017

    • Author(s)
      H. Kosako, M. Kawano, K. Tanaka and N. Matsuda
    • Organizer
      HUPO 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Phos-tag などのリン酸化プロテオミクス技術による疾患原因キナーゼの機能解析2017

    • Author(s)
      小迫英尊
    • Organizer
      第68回日本電気泳動学会総会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Remarks] 徳島大学先端酵素学研究所藤井節郎記念医科学センター細胞情報学分野ホームページ

    • URL

      http://www.fujii.tokushima-u.ac.jp/cellsignaling/

    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2022-01-27  

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