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Understanding balanced diets for animal growth through a prey-predator interspecies genetic approach

Research Project

Project/Area Number 17KT0018
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeMulti-year Fund
Section特設分野
Research Field Constructive Systems Biology
Research InstitutionKyoto University

Principal Investigator

Uemura Tadashi  京都大学, 生命科学研究科, 教授 (80213396)

Co-Investigator(Kenkyū-buntansha) 古谷 寛治  京都大学, 生命科学研究科, 講師 (90455204)
Project Period (FY) 2017-07-18 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2019: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2018: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2017: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Keywords栄養 / 成長 / 生物間相互作用 / マルチオミクス / 共生微生物叢 / ショウジョウバエ / 酵母 / 共生微生物 / オミックス / 共生細菌 / 共生真菌
Outline of Final Research Achievements

Eating “balanced diets” is believed to be one of the most critical environmental determinants for infants to grow into healthy adults. However, a big challenge is to systematically survey the contributions of nutrient compositions to the growth. To overcome this difficulty, we took advantage of a prey-predator combination of microbes and larvae of the fruit fly Drosophila melanogaster. The microbes employed are composed of two classes: a single-gene knockout collection of budding yeast Saccharomyces cerevisiae, which is one of the major ingredients of laboratory media, and yeast and bacterial strains isolated from symbiotic microbiota in larval natural food sources. We fed larvae with each microbial strain and isolated those that cause growth retardation and/or decreased pupation rate. Using multi-omics approaches of both microbes and larvae, we are characterizing features of the “balanced” nutrient composition in the microbes and responsive mechanisms in larvae driving growth.

Academic Significance and Societal Importance of the Research Achievements

幼い個体が栄養を摂取して健康な成体となり、次世代を残すことは、ヒトを含む全ての動物種の存続にとって必須の道のりである。多種類の栄養成分の量の組み合わせは無限にあり、成長や病態に与える因果関係を体系的に調べるのは容易ではない。ショウジョウバエは、ヒトまで保存された遺伝子機能や臓器間ネットワークを持ち、栄養依存的な生理機能調節における普遍的なメカニズムの理解にも大きく貢献している。本研究で新たに明らかにされる栄養成分とそれに対する応答機構が、ヒトの栄養への適応機構の理解につながることが期待できる。

Report

(5 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (45 results)

All 2021 2020 2019 2018 2017 Other

All Journal Article (7 results) (of which Peer Reviewed: 5 results,  Open Access: 3 results) Presentation (36 results) (of which Int'l Joint Research: 10 results,  Invited: 8 results) Remarks (2 results)

  • [Journal Article] Model and non-model organismsNovel adaptive mechanisms to nutritional environments2021

    • Author(s)
      上村匡, 渡辺佳織, 服部佑佳子.
    • Journal Title

      生化学

      Volume: 93 Issue: 1 Pages: 67-76

    • DOI

      10.14952/SEIKAGAKU.2021.930067

    • ISSN
      0037-1017
    • Year and Date
      2021-02-25
    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] Divergence of Drosophila species: longevity and reproduction under different nutrient balances2020

    • Author(s)
      Masayoshi Watada, Yusaku Hayashi, Kaori Watanabe, Shoko Mizutani, Ayumi Mure, Yukako Hattori, Tadashi Uemura
    • Journal Title

      Genes to Cells

      Volume: 25 Issue: 9 Pages: 626-636

    • DOI

      10.1111/gtc.12798

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 種間の栄養環境への適応能力の差を生む炭水化物応答機構2020

    • Author(s)
      渡辺佳織、上村匡、服部佑佳子
    • Journal Title

      実験医学

      Volume: 2月号 Pages: 471-474

    • Related Report
      2019 Research-status Report
  • [Journal Article] Interspecies Comparative Analyses Reveal Distinct Carbohydrate-Responsive Systems among Drosophila Species.2019

    • Author(s)
      Kaori Watanabe, Yasutetsu Kanaoka, Shoko Mizutani, Hironobu Uchiyama, Shunsuke Yajima, Masayoshi Watada, Tadashi Uemura, Yukako Hattori
    • Journal Title

      Cell Reports

      Volume: 28(10) Issue: 10 Pages: 2594-2607

    • DOI

      10.1016/j.celrep.2019.08.030

    • NAID

      120006716587

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] DeTerm: Software for automatic detection of neuronal dendritic branch terminals via an artificial neural network.2019

    • Author(s)
      Yasutetsu Kanaoka†, Henrik Skibbe†, Yusaku Hayashi, *Tadashi Uemura and *Yukako Hattori
    • Journal Title

      Genes Cells

      Volume: Jul;24(7) Issue: 7 Pages: 464-472

    • DOI

      10.1111/gtc.12700

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Epigenetic interplays between DNA demethylation and histone methylation for protecting oncogenesis2019

    • Author(s)
      Furuya Kanji、Ikura Masae、Ikura Tsuyoshi
    • Journal Title

      The Journal of Biochemistry

      Volume: 165 Issue: 4 Pages: 297-299

    • DOI

      10.1093/jb/mvy124

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] The Ras1-Cdc42 pathway is involved in hyphal development of Schizosaccharomyces japonicus2018

    • Author(s)
      Nozaki Shingo、Furuya Kanji、Niki Hironori
    • Journal Title

      FEMS Yeast Research

      Volume: 18 Issue: 4 Pages: 1-1

    • DOI

      10.1093/femsyr/foy031

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] Impacts of nutrition histories in juvenile stages on growth and later life events2021

    • Author(s)
      Tadashi Uemura
    • Organizer
      KEYSTONE SYMPOSIA on Molecular and Cellular Biology “Metabolic Decisions in Development and Disease”
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] モデル動物と非モデル動物との対比による栄養バランスへの適応機構の解析2020

    • Author(s)
      上村 匡
    • Organizer
      新適塾「脳はおもしろい」第30回会合(公益財団法人 千里ライフサイエンス振興財団)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Dissecting long-term effects of the nutritional history in juvenile stages on adult lifespan of Drosophila2020

    • Author(s)
      Shoko Mizutani, Kanji Furuya, Yuuki Takahashi, Ayumi Mure, Yukako Hattori and Tadashi Uemura
    • Organizer
      The 43th Annual Meeting of the Molecular Biology Society of Japan (MBSJ2020 Online)
    • Related Report
      2020 Annual Research Report
  • [Presentation] The nutritional basis of Drosophila associated yeasts and bacteria for larval growth2020

    • Author(s)
      Ayumi Mure, Yuuki Takahashi, Masayoshi Watada, Toshihiko Katoh, Aina Gotoh, Takane Katayama, Tadashi Uemura and Yukako Hattori
    • Organizer
      The 43th Annual Meeting of the Molecular Biology Society of Japan (MBSJ2020 Online)
    • Related Report
      2020 Annual Research Report
  • [Presentation] The nutritional basis of symbiotic yeasts and bacteria for animal growth2020

    • Author(s)
      Ayumi Mure, Yuuki Takahashi, Masayoshi Watada, Toshihiko Katoh, Aina Gotoh, Takane Katayama, Tadashi Uemura and Yukako Hattori
    • Organizer
      The 43th Annual Meeting of the Molecular Biology Society of Japan (MBSJ2020 Online)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] The nutritional basis of Drosophila associated yeasts and bacteria for larval growth2020

    • Author(s)
      Ayumi Mure
    • Organizer
      第4回京都生体質量分析研究会シンポジウム(KBMSS)
    • Related Report
      2019 Research-status Report
  • [Presentation] Nutrient-dependent responses of somatosensory neurons in Drosophila larvae: their underlying mechanisms and impacts on physiological functions.2020

    • Author(s)
      Yasutetsu Kanaoka
    • Organizer
      第4回京都生体質量分析研究会シンポジウム(KBMSS)
    • Related Report
      2019 Research-status Report
  • [Presentation] Interspecies comparative analyses reveal distinct carbohydrate-responsive systems among Drosophila species.2020

    • Author(s)
      Kaori Watanabe
    • Organizer
      第4回京都生体質量分析研究会シンポジウム(KBMSS)
    • Related Report
      2019 Research-status Report
  • [Presentation] 成長期の栄養履歴の違いがどのようにして寿命の差を生むか2020

    • Author(s)
      水谷祥子
    • Organizer
      Kyoto Biomolecular Mass Spectrometry Society(KBMSS)
    • Related Report
      2019 Research-status Report
  • [Presentation] Interspecies comparative analyses reveal distinct carbohydrate-responsive systems among Drosophila species.2020

    • Author(s)
      Kaori Watanabe
    • Organizer
      EMBO | EMBL Symposium "The Organism and its Environment"
    • Related Report
      2019 Research-status Report
  • [Presentation] Analysis of nutrient-dependent responses of somatosensory neurons in Drosophila larvae: their underlying mechanisms and adaptive roles.2019

    • Author(s)
      Yasutetsu Kanaoka
    • Organizer
      the 52nd annual meeting of the Japanese Society of Developmental Biologists (JSDB)
    • Related Report
      2019 Research-status Report
  • [Presentation] 個体成長を支える共生微生物の栄養基盤解明に向けて2019

    • Author(s)
      服部佑佳子
    • Organizer
      京都大学第21回生命科学研究科シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] The nutritional basis of Drosophila associated microbes for larval growth.2019

    • Author(s)
      Ayumi Mure
    • Organizer
      26th European Drosophila Research Conference
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Interspecies comparative analyses reveal distinct carbohydrate-responsive systems among Drosophila species.2019

    • Author(s)
      Kaori Watanabe
    • Organizer
      26th European Drosophila Research Conference
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Nutrient-dependent responses of somatosensory neurons in Drosophila larvae: their underlying mechanisms and impacts on physiological functions.2019

    • Author(s)
      Yasutetsu Kanaoka
    • Organizer
      26th European Drosophila Research Conference
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 個体成長を支えるショウジョウバエ共生酵母・共生細菌の栄養基盤の解析2019

    • Author(s)
      牟禮 あゆみ
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 感覚神経細胞における栄養応答の分子機構と個体生理機能に果たす役割の追究2019

    • Author(s)
      金岡泰哲
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 成長期の栄養履歴の違いがどのようにして寿命の差を生むか2019

    • Author(s)
      水谷祥子
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 栄養環境が成長期と後期ライフステージに与える影響2019

    • Author(s)
      上村 匡
    • Organizer
      シンポジウム「生物は加齢とともにどのように変化するのか: 最先端研究から見えてきたもの」
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Nutri-developmental biology: nutritional adaptability and adipose tissue remodeling2019

    • Author(s)
      上村 匡
    • Organizer
      FAOPS 2019 Symposium "Inter-tissue communications underlying metabolic and feeding control in living body"
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] The nutritional basis of Drosophila associated microbes for larval growth.2019

    • Author(s)
      牟禮 あゆみ
    • Organizer
      第 3 回京都生体質量分析研究会シンポジウム
    • Related Report
      2018 Research-status Report
  • [Presentation] The nutritional basis of Drosophila associated microbes for larval growth.2019

    • Author(s)
      Ayumi Mure
    • Organizer
      the 17th International Student Seminar
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] オートファジー機構から見たがん細胞のゲノムDNA損傷ストレス抵抗性獲得戦略2018

    • Author(s)
      古谷 寛治
    • Organizer
      第91回日本生化学会大会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] オートファジー機構から見たがん細胞のゲノムDNA損傷ストレス抵抗性獲得戦略2018

    • Author(s)
      古谷 寛治
    • Organizer
      第41回日本分子生物学会
    • Related Report
      2018 Research-status Report
  • [Presentation] 頑健な代謝制御システムが支えるショウジョウバエ広食性種の栄養環境への適応2018

    • Author(s)
      上村 匡
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] The nutritional basis of Drosophila associated microbes for larval growth.2018

    • Author(s)
      Ayumi Mure
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Analysis of microbes in foods of Drosophila melanogaster in the wild as nutrient sources.2018

    • Author(s)
      Ayumi Mure
    • Organizer
      13th Drosophila Research Conference
    • Related Report
      2018 Research-status Report
  • [Presentation] 個体の成長と成熟を司る栄養応答システムの解明新学術創成研究機構2018

    • Author(s)
      上村 匡
    • Organizer
      革新的統合バイオ研究コア 栄養・代謝研究ワークショップ「生体トランジスタシスを司る栄養応答システムの動作基盤」
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] A predator (fly)-prey (yeast) interspecies genetic approach to understanding balanced diets for animal growth.2018

    • Author(s)
      Tadashi Uemura
    • Organizer
      CDB Symposium 2018 “Dynamic Homeostasis: from Development to Aging”
    • Related Report
      2017 Research-status Report
  • [Presentation] Systemic TGFβ/Activin signaling governs adaptive metabolic responses to nutrient balances of Drosophila species.2018

    • Author(s)
      Yukako Hattori
    • Organizer
      CDB Symposium 2018 “Dynamic Homeostasis: from Development to Aging”
    • Related Report
      2017 Research-status Report
  • [Presentation] A prey (yeast)-predator (fly) interspecies genetic approach to understanding balanced diets for animal growth.2017

    • Author(s)
      Yuuki Takahashi
    • Organizer
      the 25th European Drosophila Research Conference 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Systemic signaling for distinct adaptive responses to nutrient balances between generalist and specialist species.2017

    • Author(s)
      Yukako Hattori
    • Organizer
      the 25th European Drosophila Research Conference 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] A prey (yeast)-predator (fly) interspecies genetic approach to understanding balanced diets for animal growth.2017

    • Author(s)
      Yuuki Takahashi
    • Organizer
      MRC LMS/Kyoto University SPIRITS Program Workshop
    • Related Report
      2017 Research-status Report
  • [Presentation] Systemic signaling for distinct adaptive responses to nutrient balances between generalist and specialist species.2017

    • Author(s)
      Yukako Hattori
    • Organizer
      MRC LMS/Kyoto University SPIRITS Program Workshop
    • Related Report
      2017 Research-status Report
  • [Presentation] 個体成長において栄養バランス変化への適応を支える全身性シグナル経路 Systemic signaling for adaptation to nutrient balances in animal growth.2017

    • Author(s)
      上村 匡
    • Organizer
      第40回日本分子生物学会年会
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 捕食者(ショウジョウバエ)・被食者(酵母)双方の遺伝学を用いた個体成長を支える栄養バランスの追究2017

    • Author(s)
      髙橋 優喜
    • Organizer
      第40回日本分子生物学会年会
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Remarks] 京都大学大学院生命科学研究科 多細胞体構築学講座 上村研究室

    • URL

      http://www.cellpattern.lif.kyoto-u.ac.jp/

    • Related Report
      2019 Research-status Report
  • [Remarks] 研究室ホームページ

    • URL

      http://www.cellpattern.lif.kyoto-u.ac.jp/

    • Related Report
      2018 Research-status Report

URL: 

Published: 2017-07-21   Modified: 2022-12-28  

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