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Investigation of organisms having unique selenium metabolic pathways and its application to bioremediation

Research Project

Project/Area Number 18405042
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section海外学術
Research Field Boundary agriculture
Research InstitutionKyoto University

Principal Investigator

ESAKI Nobuyoshi  Kyoto University, Institute for Chemical Research, Professor (50135597)

Co-Investigator(Kenkyū-buntansha) KURIHARA Tetsuo  Kyoto University, Institute for Chemical Research, Associate Professor (70243087)
MIHARA Hisaaki  Kyoto University, Institute for Chemical Research, Assistant Professor (30324693)
Project Period (FY) 2006 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥14,780,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2007: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2006: ¥8,800,000 (Direct Cost: ¥8,800,000)
Keywordsselenium / selenoprotein / selenocysteine / essential trace element / metabolism / 微生物
Research Abstract

Selenium is an essential trace element with a variety of physiological role and is strictly discriminated from its cognate sulfur to be incorporated into a specific position of proteins as a selenocysteine residue. In this study, we investigated organisms having unique selenium metabolism pathway and analyzed the structure and function of novel enzymes involved in selenium metabolism.
1. It is suggested that the synthesis of O-phosphoseryl-tRNA from seryl-tRNA by the catalysis of O-phosphosery1-tRNA kinase, (PSTK) is essential for the biosynthesis of archaeal selenocystey1-tRNA. However, our in vitro study with PAD, PSTK, and selenocysteine synthase (SecS) from the methanogenic thermophile Methanocaldococcus jannaschii revealed that the synthesis of selenocystey1-tRNA is able to proceed via two independent pathways: one is dependent on PSTK and SelD, and another depends on SecS and SelD.
2. We searched far a bacterium with a unique selenoprotein and found that Geobacter sulfurreducens probably contains a novel c-type cytochrome-like selenoprotein. This protein termed GSU2937-GSU2936 has 5 CXXCH motifs in its N-terminal region, which is encoded by the ORF upstream of a UGA codon for selenocysteine insertion. The GSU2937-GSU2936 protein shows only less than 12% sequence identity with cytochrome c nitrite reductase and hydroxylamine oxidoreductase, which are known as multi-heme proteins, suggesting that it belongs to a novel member of a protein family.

Report

(3 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • Research Products

    (24 results)

All 2008 2007 2006 2005

All Journal Article (15 results) (of which Peer Reviewed: 7 results) Presentation (9 results)

  • [Journal Article] Characterization of human selenocysteine synthase involved in selenoprotein biosynthesis2008

    • Author(s)
      Abe, Katsumasa
    • Journal Title

      Biomed. Res. Trrace Elem. 19(印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Functional analysis of two homologue mouse selenophosphate synthetase2008

    • Author(s)
      Abe, Katsumasa
    • Journal Title

      Biomed. Res. Trrace Elem. 19(印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Characterization of human selenocysteine synthase involved in selenoprotein biosynthesis2008

    • Author(s)
      Abe, Katsumasa
    • Journal Title

      Biomed. Res. Trace Elem 19(in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Functional analysis of two homologue mouseselenophosphate synthetase2008

    • Author(s)
      Abe, Katsumasa
    • Journal Title

      Biomed. Res. Trace Elem 19(in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach2007

    • Author(s)
      Fujita, Masashi
    • Journal Title

      BMC Bioinform atics 8

      Pages: 225-225

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Mining prokaryotic genomes for unknown aminoacids : a stop-codon-based approach2007

    • Author(s)
      Fujita, Masashi
    • Journal Title

      BMC Bioinformatics 8

      Pages: 225-22

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Proteomic studies of an Antarctic cold-adapted bacterium, Shewanella livingstonensis Ac10, for global identification of cold-inducible proteins2007

    • Author(s)
      Kawamoto, J.
    • Journal Title

      Extremophiles 11

      Pages: 819-826

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction of a low-temperature protein expression system using a cold-adapted bacterium, Shewanella sp strain Ac10, as the host2007

    • Author(s)
      Miyahe, R.
    • Journal Title

      Applied and Environmental Microbiology 73

      Pages: 4849-4856

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Expression, purification and preliminary X-ray characterization of DL-2-haloacid dehalogenase from Methylobacterium sp CPA12007

    • Author(s)
      Omi, R.
    • Journal Title

      Acta Crystallographica 63

      Pages: 586-589

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical and genetic analysis of the γ-resorcylate (2,6-dihydroxybenzoate) catabolic pathway in Rhizobium sp strain MTP-10005: Identification and functional analysis of its gene cluster2007

    • Author(s)
      Yoshida, Masahiro, et. al.
    • Journal Title

      J. Bacteriol. 189・5

      Pages: 1573-1581

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Enzymatic synthesis of L-pipecolic acid by Δ^1-piperideine-2-carboxylate reductase from Pseudomonas putida2006

    • Author(s)
      Muramatsu, Hisashi, et. al.
    • Journal Title

      Biosci. Biotechnol. Biochem. 70・9

      Pages: 2296-2298

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Enzymatic synthesis of cyclic amino acids by N-methyl-L-amino acid dehydrogenase from Pseudomonas putida2006

    • Author(s)
      Yasuda, Mari, et. al.
    • Journal Title

      Tetrahedron Asymmet. 17・12

      Pages: 1775-1779

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Mechanism of the reaction catalyzed by DL-2-haloacid dehalogenase asdetermined from kinetic isotope effects2006

    • Author(s)
      Papajak, Ewa
    • Journal Title

      Biochemistry 45・19

      Pages: 6012-6017

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Protein interaction between selenophosphate synthetase and IscS2005

    • Author(s)
      Abe, Katsumasa
    • Journal Title

      Biomed. Res. Trace Elem. 16

      Pages: 325-327

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Protein interaction between selenophosphate synthetase and IscS2005

    • Author(s)
      Abe, Katsumasa
    • Journal Title

      Biomed. Res. Trace Elem 16

      Pages: 325-327

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Escherichia coli由来新規NADH依存性ピリミジンレダクターゼ2007

    • Author(s)
      秀瀬涼太
    • Organizer
      2007年日本生化学会・日本分子生物学会 合同大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-11
    • Related Report
      2007 Annual Research Report
  • [Presentation] Strict Discrimination between Sulfur and Selenium by a Selenium-Speci fic Enzyme, Selenocysteine Lyase2007

    • Author(s)
      Esaki, Nobuyoshi
    • Organizer
      The 41st IUPAC World Chemistry Congress
    • Place of Presentation
      Torino, Italy
    • Year and Date
      2007-08-06
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Strict Discrimination between Sulfur and Selenium by a Selenium-Specific Enzyme, Selenocysteine Lyase2007

    • Author(s)
      Esaki, Nobuyoshi
    • Organizer
      The 41st IUPAC World Chemistry Congress
    • Place of Presentation
      Torino, Italy
    • Year and Date
      2007-08-06
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 哺乳類セレノリン酸合成酵素に関する研究2007

    • Author(s)
      阿部勝正
    • Organizer
      第18回日本微量元素学会
    • Place of Presentation
      福井県福井市
    • Year and Date
      2007-07-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ヒトSLA/LPの精製と機能解析2007

    • Author(s)
      戸部隆太
    • Organizer
      第18回日本微量元素学会
    • Place of Presentation
      福井県福井市
    • Year and Date
      2007-07-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Studies on mammalian selenophosphate synthetase Synthesis2007

    • Author(s)
      Abe, Katsumasa
    • Organizer
      The 18th Annual Meeting of the Japan Society for Biomed. Res. Trace Elem
    • Place of Presentation
      Fukui
    • Year and Date
      2007-07-05
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Purification and functional analysis of human SLA/LP2007

    • Author(s)
      Tobe, Ryuta
    • Organizer
      The 18th Annual Meeting of the Japan Society for Biomed. Res. Trice Elem
    • Place of Presentation
      Fulcui
    • Year and Date
      2007-07-05
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] M. jannaschiiのセレノシステイルtRNAsec生合成タンパク質のin vitro解析2007

    • Author(s)
      阿部勝正
    • Organizer
      日本農芸化学会2007年度大会
    • Place of Presentation
      東京都世田谷区
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] In vitro analysis of proteins involved in the biosynthesis of selenocystey1-tRNA in M. jannaschii2007

    • Author(s)
      Abe, Katsumasa
    • Organizer
      Annual Meeting of JSBBA 2007
    • Place of Presentation
      Tokyo
    • Year and Date
      2007-03-26
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2006-04-01   Modified: 2016-04-21  

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