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Elucidation of intracellular molecular diffusion mechanism using cell model

Research Project

Project/Area Number 18H01187
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 13040:Biophysics, chemical physics and soft matter physics-related
Research InstitutionThe University of Tokyo

Principal Investigator

Yanagisawa Miho  東京大学, 大学院総合文化研究科, 准教授 (50555802)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2020: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2019: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2018: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Keywords細胞モデル / 高分子混雑 / 異常拡散 / 蛍光相関分光法 / 粘弾性 / 人工細胞 / 閉じ込め / 生物物理
Outline of Final Research Achievements

Intracellular molecular diffusion is often anomalous. To elucidate the mechanism of this anomalous diffusion from the structural features, we mimicked the cell structure using cell-sized droplets of a highly concentrated polymer solution confined by a lipid membrane and analyzed the diffusion behavior. The results show that the anomalous diffusion depends only on the crowded environment produced by the polymer and not on the droplet radius. On the other hand, the diffusion coefficient decreases when the droplet radius becomes about 20 um, and the degree of decrease depends on the physical properties of the membrane covering the droplet. In the future, we will verify that the origin of the decrease in diffusion coefficient is the increase in molecular size due to the formation of molecular clusters or the change in the effective relaxation time of polymer chains.

Academic Significance and Societal Importance of the Research Achievements

本成果より、分子スケールよりも大きな細胞サイズ空間が、高濃度高分子溶液における分子挙動を変化させ得ることが明らかとなった。これは、生細胞内の分子挙動を理解する際、バルク量の分子挙動を基準とすることには問題があり、細胞サイズ空間の寄与を取り入れた理解が必要不可欠であることを示唆している。さらに、細胞サイズのミクロ高分子液滴は、医薬品や化粧品、食品の材料としても汎用されていることから、その物性の理解や制御においても有用な知見と言える。

Report

(4 results)
  • 2021 Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (50 results)

All 2021 2020 2019 2018 Other

All Journal Article (17 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 14 results,  Open Access: 9 results) Presentation (31 results) (of which Int'l Joint Research: 7 results,  Invited: 10 results) Remarks (2 results)

  • [Journal Article] Perpendicular alignment of the phase-separated boundary in adhered polymer droplets2021

    • Author(s)
      Shinohara Eriko、Watanabe Chiho、Yanagisawa Miho
    • Journal Title

      Soft Matter

      Volume: 17 Issue: 41 Pages: 9499-9506

    • DOI

      10.1039/d1sm01180d

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Membrane Surface Modulates Slow Diffusion in Small Crowded Droplets2020

    • Author(s)
      Harusawa Kanae、Watanabe Chiho、Kobori Yuta、Tomita Kazuho、Kitamura Akira、Kinjo Masataka、Yanagisawa Miho
    • Journal Title

      Langmuir

      Volume: 37 Issue: 1 Pages: 437-444

    • DOI

      10.1021/acs.langmuir.0c03086

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microfluidic Formation of Honeycomb-Patterned Droplets Bounded by Interface Bilayers via Bimodal Molecular Adsorption2020

    • Author(s)
      Fujiwara Shougo、Shoji Kan、Watanabe Chiho、Kawano Ryuji、Yanagisawa Miho
    • Journal Title

      Micromachines

      Volume: 11 Issue: 7 Pages: 701-701

    • DOI

      10.3390/mi11070701

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Unique phase behavior in cell size space: synergistic effect of molecular crowding and confinement2020

    • Author(s)
      Watanabe Chiho、Yanagisawa Miho
    • Journal Title

      Biophysical Reviews

      Volume: 12 Issue: 2 Pages: 385-386

    • DOI

      10.1007/s12551-020-00656-x

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative Analysis of Membrane Surface and Small Confinement Effects on Molecular Diffusion2020

    • Author(s)
      C. Watanabe, Y. Kobori, J. Yamamoto, M. Kinjo, M. Yanagisawa, (+ equally contributed)
    • Journal Title

      The Journal of Physical Chemistry (J. Phys. Chem.)

      Volume: 124 Issue: 6 Pages: 1090-1098

    • DOI

      10.1021/acs.jpcb.9b10558

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 化粧品のDDSに貢献するリポソームの開発と応用2020

    • Author(s)
      柳澤 実穂,渡邊 千穂
    • Journal Title

      Cosmetic stage

      Volume: 14 Pages: 45-50

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Liposomal adhesion via electrostatic interactions and osmotic deflation increase membrane tension and lipid diffusion coefficient2020

    • Author(s)
      Oda Atsushi、Watanabe Chiho、Aoki Natsumi、Yanagisawa Miho
    • Journal Title

      Soft Matter

      Volume: 16 Issue: 18 Pages: 4549-4554

    • DOI

      10.1039/d0sm00416b

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cyclic Micropipette Aspiration Reveals Viscoelastic Change of a Gelatin Microgel Prepared Inside a Lipid Droplet2020

    • Author(s)
      Sakai Atsushi、Murayama Yoshihiro、Yanagisawa Miho
    • Journal Title

      Langmuir

      Volume: 36 Issue: 19 Pages: 5186-5191

    • DOI

      10.1021/acs.langmuir.0c00428

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lipid Membrane Effect on the Elasticity of Gelatin Microgel Prepared inside Lipid Microdroplets2019

    • Author(s)
      A. Sakai, N. Hiro-oka, S. Sasaki, S. Kidoaki, M. YANAGISAWA
    • Journal Title

      Nihon Reoroji Gakkaishi

      Volume: 47 Issue: 2 Pages: 55-59

    • DOI

      10.1678/rheology.47.55

    • NAID

      130007650358

    • ISSN
      0387-1533, 2186-4586
    • Year and Date
      2019-04-15
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA Origami Nanoplate‐Based Emulsion with Nanopore Function2019

    • Author(s)
      Ishikawa Daisuke、Suzuki Yuki、Kurokawa Chikako、Ohara Masayuki、Tsuchiya Misato、Morita Masamune、Yanagisawa Miho、Endo Masayuki、Kawano Ryuji、Takinoue Masahiro
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 58 Issue: 43 Pages: 15299-15303

    • DOI

      10.1002/anie.201908392

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cell-sized confinement controls generation and stability of a protein wave for spatiotemporal regulation in cells2019

    • Author(s)
      Kohyama Shunshi、Yoshinaga Natsuhiko、Yanagisawa Miho、Fujiwara Kei、Doi Nobuhide
    • Journal Title

      eLife

      Volume: 8

    • DOI

      10.7554/elife.44591

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Basic Challenges for Liposome Applications and Their Possible Solutions: Membrane Structure and Confinement2019

    • Author(s)
      Watanabe Chiho、Yanagisawa Miho
    • Journal Title

      MEMBRANE

      Volume: 44 Issue: 5 Pages: 234-238

    • DOI

      10.5360/membrane.44.234

    • NAID

      130007724561

    • ISSN
      0385-1036, 1884-6440
    • Related Report
      2019 Annual Research Report
  • [Journal Article] 高分子混雑とミクロな閉じ込めが導く分子拡散2019

    • Author(s)
      渡邊千穂、柳澤実穂
    • Journal Title

      Colloid and Interface Communication (C & I Commun)

      Volume: -

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Single Micrometer-Sized Gels: Unique Mechanics and Characters for Applications2018

    • Author(s)
      Miho Yanagisawa、Chiho Watanabe、Kei Fujiwara
    • Journal Title

      Gels

      Volume: 4(2) Issue: 2 Pages: 29-29

    • DOI

      10.3390/gels4020029

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamics of Spinodal Decomposition in a Ternary Gelling System2018

    • Author(s)
      Yutaro Yamashita, Miho Yanagisawa, Masayuki Tokita
    • Journal Title

      Gels

      Volume: 4 Issue: 2 Pages: 26-26

    • DOI

      10.3390/gels4020026

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Increasing Elasticity through Changes in the Secondary Structure of Gelatin by Gelation in a Microsized Lipid Space2018

    • Author(s)
      Sakai Atsushi、Murayama Yoshihiro、Fujiwara Kei、Fujisawa Takahiro、Sasaki Saori、Kidoaki Satoru、Yanagisawa Miho
    • Journal Title

      ACS Central Science

      Volume: 印刷中 Issue: 4 Pages: 477-483

    • DOI

      10.1021/acscentsci.7b00625

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cell-size confinement effect on protein diffusion in crowded poly(ethylene)glycol solution2018

    • Author(s)
      C Watanabe、M Yanagisawa
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 20 Issue: 13 Pages: 8842-8847

    • DOI

      10.1039/c7cp08199e

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Presentation] 細胞サイズ液滴中の分子拡散に対する膜特性の効果2021

    • Author(s)
      春澤香苗,渡邊千穂,北村朗,金城政孝,柳澤実穂
    • Organizer
      日本物理学会第76回年次大会(2021年)(オンライン)
    • Related Report
      2020 Annual Research Report
  • [Presentation] 細胞サイズ閉じ込め中の拡散に対する界面の効果2020

    • Author(s)
      春澤香苗
    • Organizer
      第58回日本生物物理学会年会(オンライン)
    • Related Report
      2020 Annual Research Report
  • [Presentation] 高濃度高分子溶液の細胞サイズ閉じ込めに対する界面の効果2020

    • Author(s)
      春澤香苗,渡邊千穂,柳澤実穂
    • Organizer
      第19回関東ソフトマター研究会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 細胞サイズ特異的な体高分子溶液の分子拡散と相転移現象(米沢賞受賞記念講演)2020

    • Author(s)
      柳澤実穂
    • Organizer
      日本物理学会第76回年次大会(2021年)(オンライン)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Molecular diffusion in cell-mimicking droplets depending on size and shape2019

    • Author(s)
      Watanabe Chiho,Yuta Kobori,Yamamto Jotaro,KIinjyo Masataka,Yanagisawa Miho
    • Organizer
      The 5th International Soft Matter Conference (ISMC2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ミクロ閉鎖系での高分子物性から細胞内相転移の理解へ2019

    • Author(s)
      柳澤実穂
    • Organizer
      第9回分子モーター討論会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 高濃度高分子液滴中での分子拡散とその外部輸送に伴う変化2019

    • Author(s)
      春澤香苗,Johanna Muliany,渡邊千穂,柳澤実穂
    • Organizer
      第18回関東ソフトマター研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 高分子溶液を内包したミクロ液滴中の分子拡散2019

    • Author(s)
      小堀雄大,渡邊千穂,山本条太郎,金城政孝,柳澤実穂
    • Organizer
      第18回関東ソフトマター研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 細胞サイズ閉じ込めに誘起される高分子の遅い拡散および相分離現象2019

    • Author(s)
      Watanabe Chiho,Kobori Yuta,Yamamoto Jotaro,Kinjo Masataka,Yanagisawa Miho
    • Organizer
      日本物理学会 2019年秋季大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Unique phase behavior in cell size space: Synergistic effect of molecular crowding and confinement2019

    • Author(s)
      Miho Yanagisawa
    • Organizer
      第57回日本生物物理学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 細胞サイズ特異的な生体高分子溶液の相転移現象の解明から生命現象の物理的理解へ2019

    • Author(s)
      柳澤実穂
    • Organizer
      定量生物学会 北海道キャラバン
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 細胞内混雑環境下での分子拡散描像と異常拡散の解明に向けて2019

    • Author(s)
      春澤香苗,Johanna Muliany,渡邊千穂,柳澤実穂
    • Organizer
      定量生物学会 北海道キャラバン
    • Related Report
      2019 Annual Research Report
  • [Presentation] Synergistic effect of molecular crowding and cell size confinement as a potential cause of unique phase behaviors2019

    • Author(s)
      Chiho Watanabe,Miho Yanagisawa
    • Organizer
      Okinawa colloids 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular diffusion under cell mimetic membrane confinement : the characteristic environment2019

    • Author(s)
      Kobori Yuta,Watanabe Chiho,Yamamoto Jotaro,Kinjo Masataka,Yanagisawa Miho
    • Organizer
      Okinawa colloids 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Cell-size confinement effect on molecular diffusion and phase separation2019

    • Author(s)
      Chiho Watanabe,Miho Yanagisawa
    • Organizer
      UBI-NanoLSI workshop
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 細胞サイズの生体高分子液滴における相転移と分子拡散2019

    • Author(s)
      柳澤実穂
    • Organizer
      第9回ソフトマター研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 細胞モデル中で作製した生体高分子ミクロゲルの特異な力学特性2019

    • Author(s)
      柳澤実穂
    • Organizer
      第29回MRS学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 細胞モデル液滴における生体高分子混合系の相分離2019

    • Author(s)
      柳澤実穂
    • Organizer
      第42回分子生物学会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] DNA骨格によるリポソームの力学制御とその応用可能性2019

    • Author(s)
      柳澤実穂
    • Organizer
      日本膜学会第41年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 球状および線状高分子溶液中の分子拡散に対する細胞サイズ閉じ込めの影響2018

    • Author(s)
      小堀雄大, 渡邊千穂, 柳澤実穂
    • Organizer
      第5回サイボウニクス研究会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 細胞内混雑環境の再現から異常拡散の解明に向けて2018

    • Author(s)
      春澤香苗, Johanna Muliany, 渡邊千穂, 柳澤実穂
    • Organizer
      第5回サイボウニクス研究会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 相分離リポソームにおけるαヘモリシンの局在と濃縮2018

    • Author(s)
      小林瑞輝, 藤原慶, 柳澤実穂
    • Organizer
      第5回サイボウニクス研究会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ミクロ空間で高弾性となる生体高分子ゲル -表面物性とラプラス圧の影響-2018

    • Author(s)
      廣岡直己, 酒井淳, 柳澤実穂
    • Organizer
      第5回サイボウニクス研究会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ミクロ空間閉じ込めと高分子混雑が導く遅い分子拡散2018

    • Author(s)
      渡邊千穂, 小堀雄大, 柳澤実穂
    • Organizer
      第8回ソフトマター研究会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Buckling of polymer blend microgels via phase separation and gelation2018

    • Author(s)
      小柳佳介, 工藤和恵, 柳澤実穂
    • Organizer
      The 12th SPSJ International Polymer Conference (IPC2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular diffusion in cell-mimicking system measured by fluorescence correlation spectroscopy2018

    • Author(s)
      渡邊千穂, 小堀雄大, 柳澤実穂
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 細胞モデルに閉じ込められたタンパク質溶液中の分子拡散2018

    • Author(s)
      小堀雄大, 渡邊千穂, 柳澤実穂
    • Organizer
      日本物理学会2018年秋季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 細胞モデルを用いた細胞内分子拡散の解明2018

    • Author(s)
      渡邊千穂, 柳澤実穂
    • Organizer
      NCNP-TUAT 若手研究シンポジウム2018夏
    • Related Report
      2018 Annual Research Report
  • [Presentation] Single Microgels Prepared in Artificial Cell2018

    • Author(s)
      柳澤実穂
    • Organizer
      Designer Soft Matter 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effect of Cell-size Confinement on Protein Diffusion in Crowding Polymer Solution2018

    • Author(s)
      渡邊千穂, 柳澤実穂
    • Organizer
      Designer Soft Matter 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 細胞モデルによる、細胞モデルのための、ミクロゲル研究2018

    • Author(s)
      柳澤 実穂
    • Organizer
      「細胞」でつながる研究会 ーBio.Phys.Chem.三重点の探索ー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Remarks] 柳澤研究室のHP

    • URL

      https://sites.google.com/g.ecc.u-tokyo.ac.jp/yanagisawa-lab/

    • Related Report
      2020 Annual Research Report
  • [Remarks] 柳澤研究室HP

    • URL

      https://sites.google.com/g.ecc.u-tokyo.ac.jp/yanagisawa-lab/

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report

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Published: 2018-04-23   Modified: 2023-01-30  

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