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Analyses of torque-generation mechanism of F1-ATPase by time-divided X-ray crystallographic study

Research Project

Project/Area Number 18H02409
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 43040:Biophysics-related
Research InstitutionInstitute of Physical and Chemical Research (2022)
Tokyo Institute of Technology (2018-2020)

Principal Investigator

Suzuki Toshiharu  国立研究開発法人理化学研究所, 開拓研究本部, 客員研究員 (60618809)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2020: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2019: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2018: ¥12,480,000 (Direct Cost: ¥9,600,000、Indirect Cost: ¥2,880,000)
KeywordsF1-ATPase / X線結晶構造解析 / ATPase / crystal structure / FoF1-ATP syntase / structural biology / motor protein / ATP / X-ray crystallography / motor proteins / 分子モーター / FoF1-ATP合成酵素
Outline of Final Research Achievements

In this study, various high-resolution crystal structures of reaction intermediate states of bovine F1-ATPase were determined by using various X-ray crystallographic techniques. The structures obtained enabled us to deeply discuss its continuous structural changes at the atomic level during its ATPase’s turnover. It unveiled valuable molecular mechanisms for driving the rotation induced by phosphate-releasing, determining the release-order of reaction products, ADP and Pi, and for highly-conserved arginine-finger residue. In addition, the substrate binding cleft formed by alpha- and beta-subunits was revealed to shrink by ATP-binding and to stepwisely expand by the following ATP-cleavage and phosphate-release. It provides us to clues to understand the molecular mechanism of molecular motor in light of energy conversion.

Academic Significance and Societal Importance of the Research Achievements

近年多くの蛋白質の立体構造が決定されているが、蛋白質が機能している瞬間を原子レベルで議論できている例は非常に少ない。しかし本研究では高分解能な酵素反応機構中間体構造が多種得られ議論できている。この手法が他酵素に適用できれば、様々な酵素の触媒機能理解に繋がると期待される。また本研究では、筋肉など生体内で多様に利用されているATPaseの分子機構を明らかにした。ATPaseがATPの化学エネルギーから力学的エネルギーを取り出し利用する仕組みの理解は、将来的な人工ナノアクチュエーターの設計や、生命のエネルギーを利用するという、新しいエネルギー獲得・利用法の確立の理論的基盤になると考えられる。

Report

(2 results)
  • 2022 Final Research Report ( PDF )
  • 2018 Annual Research Report
  • Research Products

    (9 results)

All 2019 Other

All Int'l Joint Research (1 results) Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (7 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results)

  • [Int'l Joint Research] The University of Toronto(カナダ)

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Structure of a Bacterial ATP Synthase2019

    • Author(s)
      Gui H, Suzuki T, Rubunstein JL
    • Journal Title

      Elife

      Volume: 8

    • DOI

      10.7554/elife.43128

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Structural and biophysical analyses of torque generation mechanism of FoF1-ATP synthase2019

    • Author(s)
      Toshiharu Suzuki
    • Organizer
      第57回生物物理学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ATP加水分解反応中には何が起きているのか? -X線結晶構造解析による哺乳類F1-ATPaseのcatalytic turnoverの分析-2019

    • Author(s)
      鈴木俊治、山下栄樹、馬場清喜、長谷川和也、熊坂崇、平田邦生、遠藤斗志也、吉田賢右、久堀徹
    • Organizer
      日本結晶学会令和元年度年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Structural and biophysical analyses of torque generation mechanism of FoF1-ATPase and F1-ATPase2019

    • Author(s)
      Toshiharu Suzuki
    • Organizer
      2019 Gordon Research Conference on Bioenergetics: Integration of Structure, Mechanism and Theory of Bioenergy Conversion in Health and Disease
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] What happens during ATPase’s turnover? X-ray crystallographic analysis for catalytic turnover of mammalian F1-ATPases2019

    • Author(s)
      Toshiharu Suzuki, Eiki Yamashita, Seiki Baba, Kazuya Hasegawa, Kunio Hirata, Takashi Kumasaka, Toshiya Endo, Masasuke Yoshida, Toru Hisabori
    • Organizer
      ASCA2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ハイブリッドF1-ATPaseの1分子回転観察2019

    • Author(s)
      渡邉 亮, 上野 博史, 鈴木 俊治, 小林 稜平, 野地 博行
    • Organizer
      第57回生物物理学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] タンパク質が力を紡ぎ出す仕組みとは? 近年の構造解析技術が明らかにしたFoF1-ATP合成酵素の回転力発生機構2019

    • Author(s)
      鈴木俊治
    • Organizer
      理研セミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] F1-ATPaseの構造解析と反応機構の解明2019

    • Author(s)
      195.鈴木俊治
    • Organizer
      大阪大学蛋白研セミナー
    • Related Report
      2018 Annual Research Report
    • Invited

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Published: 2018-04-23   Modified: 2024-01-30  

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