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SSDNA

Research Project

Project/Area Number 18H02485
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 45010:Genetics-related
Research InstitutionNational Institute of Genetics

Principal Investigator

NIKI Hironori  国立遺伝学研究所, 遺伝形質研究系, 教授 (70208122)

Project Period (FY) 2018-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2021: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2020: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2019: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2018: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Keywords核様体 / 染色体 / 凝縮 / 核 / SMC / コンデンシン / DNA結合 / 一本鎖DNA / バクテリア / トポロジカル結合 / CT変換 / 大腸菌 / ゲルシフトアッセイ方法 / アミノ酸残基置換 / ssDNA / ATP加水分解酵素
Outline of Final Research Achievements

Bacterial condensin localizes in the vicinity of the origin of chromosome replication. To investigate the molecular mechanism of condensin binding to rDNA, we conducted biochemical experiments on the topological binding of the E. coli condensin MukB to single-stranded DNA. The biochemical investigations revealed that MukB contains specific amino acid residues for binding to single-stranded DNA. These residues function as more stable single-stranded DNA domains when they are topologically bound to single-stranded DNA. Furthermore, during transcription, rDNA forms a single-stranded DNA domain downstream of its promoter, which facilitates the topological binding of bacterial condensin.

Academic Significance and Societal Importance of the Research Achievements

コンデンシンは染色体DNAの安定な保持に関わる因子としてバクテリアからヒトまで保存されており、生命の基本因子の一つである。コンデンシンは特に長鎖DNAの凝縮を担っているが、その分子メカニズムについてはまだ全容が解明されていない。バクテリアのコンデンシンも基本的な性質はヒトのものと共通している。バクテリアコンデンシンの研究を通じて、コンデンシンが持つ一本鎖DNA結合能の生理的な役割が明らかになり、コンデンシンがどのようなDNA領域に結合しやすく、またどのような分子メカニズムでDNA凝縮を行なっているのかその解明に貢献できる。

Report

(5 results)
  • 2022 Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (2 results)

All 2022 2019

All Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 1 results)

  • [Journal Article] Profiling a single-stranded DNA region within an rDNA segment that affects the loading of bacterial condensin2022

    • Author(s)
      Koichi Yano、Hideki Noguchi、Hironori Niki
    • Journal Title

      iScience

      Volume: 25 Issue: 12 Pages: 105504-105504

    • DOI

      10.1016/j.isci.2022.105504

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] In Vivo and In Vitro Assay for Monitoring the Topological Loading of Bacterial Condensins on DNA2019

    • Author(s)
      Koichi Yano, Koichiro Akiyama, and Hironori Niki
    • Journal Title

      Methods in Molecular Biology

      Volume: 2004 Pages: 181-196

    • DOI

      10.1007/978-1-4939-9520-2_14

    • ISBN
      9781493995196, 9781493995202
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research

URL: 

Published: 2018-04-23   Modified: 2024-01-30  

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