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Analysis of membrane protein dynamics with chemical approaches

Research Project

Project/Area Number 18H03935
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Review Section Medium-sized Section 37:Biomolecular chemistry and related fields
Research InstitutionOsaka University

Principal Investigator

Kikuchi Kazuya  大阪大学, 工学研究科, 教授 (70292951)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥44,330,000 (Direct Cost: ¥34,100,000、Indirect Cost: ¥10,230,000)
Fiscal Year 2020: ¥13,650,000 (Direct Cost: ¥10,500,000、Indirect Cost: ¥3,150,000)
Fiscal Year 2019: ¥14,560,000 (Direct Cost: ¥11,200,000、Indirect Cost: ¥3,360,000)
Fiscal Year 2018: ¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Keywords化学プローブ / 膜蛋白質 / PYPタグ / BLタグ / 蛋白質ラベル化 / GLUT4 / β-ラクタマーゼタグ / TLR4 / 1分子イメージング / タンパク質ラベル化
Outline of Final Research Achievements

In this study, we developed chemical protein labeling probes and applied them for analyzing the dynamics of membrane proteins in living cells. First, we applied a PYP tag labeling method to investigate why glucose transporter GLUT4 is retained in the plasma membrane by glycosylation. Second, we developed near-infrared and red fluorescent probes based on BL-tag system for imaging membrane proteins and analyzing the dynamics in response to ligand stimulation. In addition, we developed an improved labeling system using new ligand structures and beta-lactamase. Using these chemical probes, we provided a method for analyzing membrane protein dynamics and protein-protein interactions.

Academic Significance and Societal Importance of the Research Achievements

本研究成果によって、膜蛋白質が生きた細胞内でどのように振る舞うのかを調べるための道具を提供することが可能となった。例えば、膜蛋白質であるGLUT4の細胞膜に維持される機構はⅡ型糖尿病の発症に関与しており、相互作用に関わる蛋白質を検出する化学プローブはこの機構解明に大きく貢献できることが期待できる。また、がんや免疫応答に関与する受容体を蛍光ラベル化し、イメージングによって解析することで、これらの動態を生きた状態で可視化追跡することが可能となる。

Report

(4 results)
  • 2021 Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (34 results)

All 2022 2021 2020 2019 2018

All Journal Article (22 results) (of which Int'l Joint Research: 9 results,  Peer Reviewed: 22 results,  Open Access: 10 results) Presentation (10 results) (of which Int'l Joint Research: 9 results,  Invited: 10 results) Book (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] カテプシン K 活性の検出を目指した Off-On スイッチング 19F MRI ナノプローブの開発2022

    • Author(s)
      小西祐輝、杉原文徳、蓑島維文、菊地和也
    • Journal Title

      日本分子イメージング学会機関誌(JSMI Report)

      Volume: 15 Pages: 29-33

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cardioluminescence in Transgenic Zebrafish Larvae: A Calcium Imaging Tool to Study Drug Effects and Pathological Modeling2021

    • Author(s)
      Vicente Manuel、Salgado-Almario Jussep、Collins Michelle M.、Martinez-Sielva Antonio、Minoshima Masafumi、Kikuchi Kazuya、Domingo Beatriz、Llopis Juan
    • Journal Title

      Biomedicines

      Volume: 9 Issue: 10 Pages: 1294-1294

    • DOI

      10.3390/biomedicines9101294

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Anti-Siglec-15 antibody suppresses bone resorption by inhibiting osteoclast multinucleation without attenuating bone formation2021

    • Author(s)
      Tsukazaki Hiroyuki、Kikuta Junichi、Ao Tomoka、Morimoto Akito、Fukuda Chie、Tsuda Eisuke、Minoshima Masafumi、Kikuchi Kazuya、Kaito Takashi、Ishii Masaru
    • Journal Title

      Bone

      Volume: 152 Pages: 116095-116095

    • DOI

      10.1016/j.bone.2021.116095

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of Off-On Switching 19F MRI Probes for Cathepsin K Activity Detection2021

    • Author(s)
      Konishi Yuki、Okunishi Atsuya、Sugihara Fuminori、Nakamura Tatsuya、Akazawa Kazuki、Minoshima Masafumi、Kikuchi Kazuya
    • Journal Title

      Bulletin of the Chemical Society of Japan

      Volume: 94 Issue: 6 Pages: 1690-1694

    • DOI

      10.1246/bcsj.20210099

    • NAID

      130008066557

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Near-infrared fluorescent probes: a next-generation tool for protein-labeling applications2021

    • Author(s)
      Reja Shahi Imam、Minoshima Masafumi、Hori Yuichiro、Kikuchi Kazuya
    • Journal Title

      Chemical Science

      Volume: 12 Issue: 10 Pages: 3437-3447

    • DOI

      10.1039/d0sc04792a

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Optical Manipulation of Subcellular Protein Translocation Using a Photoactivatable Covalent Labeling System2021

    • Author(s)
      Kowada Toshiyuki、Arai Keisuke、Yoshimura Akimasa、Matsui Toshitaka、Kikuchi Kazuya、Mizukami Shin
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 60 Issue: 20 Pages: 11378-11383

    • DOI

      10.1002/anie.202016684

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fluorogenic probes for detecting deacylase and demethylase activity towards post-translationally-modified lysine residues2021

    • Author(s)
      Hori Yuichiro、Nishiura Miyako、Tao Tomomi、Baba Reisuke、Bull Steven D.、Kikuchi Kazuya
    • Journal Title

      Chemical Science

      Volume: 12 Issue: 7 Pages: 2498-2503

    • DOI

      10.1039/d0sc06551j

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A step towards gadolinium-free bioresponsive MRI contrast agent2021

    • Author(s)
      Wyskocka-Gajda Marzena、Przypis Lukasz、Olesiejuk Monika、Krawczyk Tomasz、Kuznik Anna、Nawara Krzysztof、Minoshima Masafumi、Sugihara Fuminori、Kikuchi Kazuya、Kuznik Nikodem
    • Journal Title

      European Journal of Medicinal Chemistry

      Volume: 211 Pages: 113086-113086

    • DOI

      10.1016/j.ejmech.2020.113086

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Single-cell dynamics of pannexin-1-facilitated programmed ATP loss during apoptosis2020

    • Author(s)
      Imamura Hiromi、Sakamoto Shuichiro、Yoshida Tomoki、Matsui Yusuke、Penuela Silvia、Laird Dale W、Mizukami Shin、Kikuchi Kazuya、Kakizuka Akira
    • Journal Title

      eLife

      Volume: 9

    • DOI

      10.7554/elife.61960

    • NAID

      120006893984

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Oxygen Functional Groups on MWCNT Surface as Critical Factor Boosting T2 Relaxation Rate of Water Protons: Towards Improved CNT-Based Contrast Agents2020

    • Author(s)
      Tomczyk Mateusz Michal、Boncel Slawomir、Herman Artur、Krawczyk Tomasz、Jakobik-Kolon Agata、Pawlyta Miroslawa、Krzywiecki Maciej、Chrobak Artur、Minoshima Masafumi、Sugihara Fuminori、Kikuchi Kazuya、Kuznik Nikodem
    • Journal Title

      International Journal of Nanomedicine

      Volume: 15 Pages: 7433-7450

    • DOI

      10.2147/ijn.s257230

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A Photodeactivatable Antagonist for Controlling CREB-Dependent Gene Expression2020

    • Author(s)
      Imoto Takuma、Minoshima Masafumi、Yokoyama Tatsushi、Emery Ben P.、Bull Steven D.、Bito Haruhiko、Kikuchi Kazuya
    • Journal Title

      ACS Central Science

      Volume: 6 Issue: 10 Pages: 1813-1818

    • DOI

      10.1021/acscentsci.0c00736

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An Acid‐Activatable Fluorescence Probe for Imaging Osteocytic Bone Resorption Activity in Deep Bone Cavities2020

    • Author(s)
      Hashimoto Ryu、Minoshima Masafumi、Kikuta Junichi、Yari Shinya、Bull Steven D.、Ishii Masaru、Kikuchi Kazuya
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 59 Issue: 47 Pages: 20996-21000

    • DOI

      10.1002/anie.202006388

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of photoswitchable fluorescent molecules using arylazopyrazole2020

    • Author(s)
      Torii K, Hori Y, Watabe K, Kikuchi K
    • Journal Title

      Bull Chem Soc Jpn.

      Volume: - Issue: 7 Pages: 821-824

    • DOI

      10.1246/bcsj.20200077

    • NAID

      130007879560

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of Fluorogenic Probes for Rapid High-Contrast Imaging of Transient Nuclear Localization of Sirtuin 32020

    • Author(s)
      Gao J, Hori Y, Shimomura T, Bordy M, Hasserodt J, Kikuchi K
    • Journal Title

      Chembiochem

      Volume: 21 Issue: 5 Pages: 656-662

    • DOI

      10.1002/cbic.201900568

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Live-Cell Imaging of Protein Degradation Utilizing Designed Protein-Tag Mutant and Fluorescent Probe with Turn-Off Switch2020

    • Author(s)
      Gao J, Hori Y, Takeuchi O, Kikuchi K
    • Journal Title

      Bioconjug Chem

      Volume: 31 Issue: 3 Pages: 577-583

    • DOI

      10.1021/acs.bioconjchem.9b00696

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In Vivo Multicolor Imaging with Fluorescent Probes Revealed the Dynamics and Function of Osteoclast Proton Pumps2019

    • Author(s)
      Minoshima Masafumi、Kikuta Junichi、Omori Yuta、Seno Shigeto、Suehara Riko、Maeda Hiroki、Matsuda Hideo、Ishii Masaru、Kikuchi Kazuya
    • Journal Title

      ACS Central Science

      Volume: 5 Issue: 6 Pages: 1059-1066

    • DOI

      10.1021/acscentsci.9b00220

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Photolytic Release of a Caged Inhibitor of an Endogenous Transcription Factor Enables Optochemical Control of CREB-Mediated Gene Expression2019

    • Author(s)
      Imoto Takuma、Kawase Akihiro、Minoshima Masafumi、Yokoyama Tatsushi、Bito Haruhiko、Kikuchi Kazuya
    • Journal Title

      Organic Letters

      Volume: 22 Issue: 1 Pages: 22-25

    • DOI

      10.1021/acs.orglett.9b03568

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SCOTfluors: Small, Conjugatable, Orthogonal, and Tunable Fluorophores for In Vivo Imaging of Cell Metabolism2019

    • Author(s)
      Benson Sam、Fernandez Antonio、Barth Nicole D.、de Moliner Fabio、Horrocks Mathew H.、Herrington C. Simon、Abad Jose Luis、Delgado Antonio、Kelly Lisa、Chang Ziyuan、Feng Yi、Nishiura Miyako、Hori Yuichiro、Kikuchi Kazuya、Vendrell Marc
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 58 Issue: 21 Pages: 6911-6915

    • DOI

      10.1002/anie.201900465

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Highly Sensitive Detection of Caspase-3/7 Activity in Living Mice Using Enzyme-Responsive 19F MRI Nanoprobes2018

    • Author(s)
      Akazawa Kazuki、Sugihara Fuminori、Nakamura Tatsuya、Mizukami Shin、Kikuchi Kazuya
    • Journal Title

      Bioconjugate Chemistry

      Volume: 29 Issue: 5 Pages: 1720-1728

    • DOI

      10.1021/acs.bioconjchem.8b00167

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sensing caspase-1 activity using activatable 19F MRI nanoprobes with improved turn-on kinetics2018

    • Author(s)
      Akazawa Kazuki、Sugihara Fuminori、Minoshima Masafumi、Mizukami Shin、Kikuchi Kazuya
    • Journal Title

      Chemical Communications

      Volume: 54 Issue: 83 Pages: 11785-11788

    • DOI

      10.1039/c8cc05381b

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Perfluorocarbon‐Based 19F MRI Nanoprobes for In Vivo Multicolor Imaging2018

    • Author(s)
      Akazawa Kazuki、Sugihara Fuminori、Nakamura Tatsuya、Matsushita Hisashi、Mukai Hiroaki、Akimoto Rena、Minoshima Masafumi、Mizukami Shin、Kikuchi Kazuya
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 57 Issue: 51 Pages: 16742-16747

    • DOI

      10.1002/anie.201810363

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthetic-Molecule/Protein Hybrid Probe with Fluorogenic Switch for Live-Cell Imaging of DNA Methylation2018

    • Author(s)
      Yuichiro Hori, Norimichi Otomura, Ayuko Nishida, Miyako Nishiura, Maho Umeno, Isao Suetake, Kazuya Kikuchi
    • Journal Title

      J Am Chem Soc

      Volume: 140 Issue: 5 Pages: 1686-1690

    • DOI

      10.1021/jacs.7b09713

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Nano-particle based 19F MRI contrast agent with tunable chemical switches2021

    • Author(s)
      Kazuya Kikuchi
    • Organizer
      Pacifichem 2021
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] New Biological Findings which were Revealed by Designed Fluorescent Probes2019

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      Chemical Biology & Physiology Conference 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] In vivo Multicolor Imaging with Fluorescent Probes Revealed Dynamics and Function of Osteoclast Proton Pumps2019

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      16th International, Methods & Applications of Fluorescence (Roger Y Tsien Memorial Symposium)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] In vivo Chemical Probes for MRI and Fluorescence Imaging2019

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      ICBIC-19, International Conference on Biological Inorganic Chemistry
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Development of Multifunctional 19F MRI Contrast Agents Based on Fluorine-encapsulated Silica Nanoparticle2019

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      The Future of Molecular MR: A Cellular and Molecular Imaging Workshop
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] イメージングプローブのデザイン・合成によるケミカルバイオロジー研究2019

    • Author(s)
      菊地 和也
    • Organizer
      第19回日本蛋白質科学会年会 第71回日本細胞生物学会大会 合同年次学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] New Biological Findings Which Were Revealed by Designed Chemical Probes2018

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      A3 Meeting for Chemical Biology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] In Vivo Chemical Probes for MRI and Fluorescence Imaging2018

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      The 9th Asian Biological Inorganic Chemistry Conference (AsBIC IX)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Development of Multifunctional 19F MRI Contrast Agents Based on Fluorine-encapsulated Silica Nanoparticle2018

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      Imaging in 2020
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] New Biological Findings Which Were Clarified by Designed Chemical Probes2018

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      MSMLG 2018, 6th International Conference on Molecular Sensors and Molecular Logic Gates
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Book] 先端の分析法 第2版(原理編第3章プローブ, MRIプローブ)2022

    • Author(s)
      蓑島維文、菊地和也
    • Total Pages
      1072
    • Publisher
      エヌ・ティー・エス
    • ISBN
      9784860437374
    • Related Report
      2020 Annual Research Report
  • [Patent(Industrial Property Rights)] ケージド化合物から化合物を放出させる方法2021

    • Inventor(s)
      蓑島維文、橋本 龍、菊地和也
    • Industrial Property Rights Holder
      蓑島維文、橋本 龍、菊地和也
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2021-022014
    • Filing Date
      2021
    • Related Report
      2020 Annual Research Report

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Published: 2018-04-23   Modified: 2023-01-30  

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