• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Evolution of the novel cell types from the aspect of the complex network

Research Project

Project/Area Number 18H04004
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Review Section Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
Research InstitutionUniversity of Tsukuba

Principal Investigator

Wada Hiroshi  筑波大学, 生命環境系, 教授 (60303806)

Co-Investigator(Kenkyū-buntansha) 矢田 哲士  九州工業大学, 大学院情報工学研究院, 教授 (10322728)
川島 武士  国立遺伝学研究所, 情報研究系, 助教 (10378531)
市瀬 夏洋  京都大学, 情報学研究科, 特定准教授 (70302750)
Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥43,550,000 (Direct Cost: ¥33,500,000、Indirect Cost: ¥10,050,000)
Fiscal Year 2022: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Fiscal Year 2021: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Fiscal Year 2020: ¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
Fiscal Year 2019: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Fiscal Year 2018: ¥9,230,000 (Direct Cost: ¥7,100,000、Indirect Cost: ¥2,130,000)
Keywordsネットワーク / 柔軟性 / 棘皮動物 / 個体変異 / 遺伝子発現ネットワーク / ウニ / 発生の頑健性 / 発生進化 / 遺伝子ネットワーク / 新規細胞 / プロモーター / 進化 / 遺伝子調節ネットワーク / 発生学的浮動 / 変異ロバスト性 / 新奇遺伝子 / 遺伝子制御ネットワーク / 新規細胞タイプ / ゲノム / 非モデル生物 / ヒトデ
Outline of Final Research Achievements

We tested the hypothesis that the metastable state of the gene expression regulatory network led to the evolution of novel cell types, as well as the hypothesis that its flexibility was the driving force behind the evolution of novel cell types. Theoretical studies revealed that the distribution of inputs and outputs of gene expression regulation plays an important role in network stability. Our results of the evolutionary mechanism of the sea urchin Pmar1/HesC dual repression mechanism also provided insight into the mechanism by which modifications of early developmental processes can be achieved without disrupting development. Finally, we also revealed distinct individual differences in gene expression during sea urchin development, providing clear evidence for the flexibility of the gene expression regulatory network.

Academic Significance and Societal Importance of the Research Achievements

ダーウィンが「種の起源」を著す以前、多くの生物学者にとって、種内の個体差はノイズでしかなかった。しかし、ダーウィンはこの個体差に着目し、育種家が個体差に着目しながら、品種改良をしてきたことと対比させ、種の多様性、あるいは適応的な形態が個体変異を原動力として形成されることを論じた。現代でも発生過程の個体差は多くの発生学者にとってはノイズでしかないかもしれないが、この個体変異が形態進化の原動力になっている可能性を指摘したい。形態進化の視点からは、新しい準安定状態の探索を可能にしていると言える。このような発生の個体変異に新しい光を当て、集団発生生物学という新たな学問の形成にもつながると考えている。

Report

(6 results)
  • 2023 Final Research Report ( PDF )
  • 2022 Annual Research Report
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (15 results)

All 2024 2023 2021 2020 2019

All Journal Article (13 results) (of which Peer Reviewed: 13 results,  Open Access: 5 results) Presentation (2 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Development of the vertebra and fin skeleton in the lamprey and its implications for the homology of vertebrate vertebrae.2024

    • Author(s)
      Hirofumi Kariyayama, Natalia Gogoleva, Keishi Harada, Hiromasa Yokoyama, Hiroki Ono, Daichi G. Suzuki, Yuji Yamazaki and Hiroshi Wada
    • Journal Title

      Developmental Dynamics

      Volume: 253 Issue: 3 Pages: 283-295

    • DOI

      10.1002/dvdy.657

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Early expression onset of tissue-specific effector genes during the specification process in sea urchin embryos.2023

    • Author(s)
      Shumpei Yamakawa, Atsuko Yamazaki, Yoshiaki Morino and Hiroshi Wada
    • Journal Title

      EvoDevo

      Volume: 14 Issue: 1 Pages: 7-7

    • DOI

      10.1186/s13227-023-00210-2

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Detection of TALEN-mediated genome cleavage during early embryonic stage of the starfish Patiria pectinifera.2023

    • Author(s)
      Shumpei Yamakawa, Yasunori Sasakura, Yoshiaki Morino and Hiroshi Wada
    • Journal Title

      Developmental Dynamics

      Volume: 252 Issue: 12 Pages: 1471-1481

    • DOI

      10.1002/dvdy.641

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamical robustness and its structural dependence in biological networks2021

    • Author(s)
      Ichinose N, Kawashima T, Yada T, Wada H
    • Journal Title

      J Theor Biol

      Volume: 526 Pages: 110808-110808

    • DOI

      10.1016/j.jtbi.2021.110808

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene regulation of adult skeletogenesis in starfish and modifications during gene network co-option2021

    • Author(s)
      Yamazaki Atsuko、Yamakawa Shumpei、Morino Yoshiaki、Sasakura Yasunori、Wada Hiroshi
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 20111-20111

    • DOI

      10.1038/s41598-021-99521-4

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation of knock-in lampreys by CRISPR-Cas9-mediated genome engineering2021

    • Author(s)
      Suzuki Daichi G.、Wada Hiroshi、Higashijima Shin-ichi
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 19836-19836

    • DOI

      10.1038/s41598-021-99338-1

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Duplication of spiralian-specific TALE genes and evolution of the blastomere specification mechanism in the bivalve lineage2021

    • Author(s)
      Phuangphong Supanat、Tsunoda Jumpei、Wada Hiroshi、Morino Yoshiaki
    • Journal Title

      EvoDevo

      Volume: 12 Issue: 1 Pages: 1-16

    • DOI

      10.1186/s13227-021-00181-2

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quasiperiodic-Chaotic Neural Networks and Short-Term Analog Memory.2021

    • Author(s)
      N. Ichinose
    • Journal Title

      Int. J. Bifurc. Chaos

      Volume: 31 Issue: 01 Pages: 1-18

    • DOI

      10.1142/s0218127421300032

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] pmar1/phb homeobox genes and the evolution of the double-negative gate for endomesoderm specification in echinoderms2020

    • Author(s)
      Yamazaki Atsuko、Morino Yoshiaki、Urata Makoto、Yamaguchi Masaaki、Minokawa Takuya、Furukawa Ryohei、Kondo Mariko、Wada Hiroshi
    • Journal Title

      Development

      Volume: 147 Pages: 182139-182139

    • DOI

      10.1242/dev.182139

    • NAID

      120007132931

    • Related Report
      2020 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of the novel bivalve body plan through modification of early developmental events in mollusks2020

    • Author(s)
      Wada Hiroshi、Phuangphong Supanat、Hashimoto Naoki、Nagai Kiyohito
    • Journal Title

      Evolution & Development

      Volume: in press Issue: 6 Pages: 463-470

    • DOI

      10.1111/ede.12334

    • Related Report
      2020 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of the lamprey velum and implications for the evolution of the vertebrate jaw2020

    • Author(s)
      Yokoyama Hiromasa、Yoshimura Miho、Suzuki Daichi G.、Higashiyama Hiroki、Wada Hiroshi
    • Journal Title

      Developmental Dynamics

      Volume: 250 Issue: 1 Pages: 88-98

    • DOI

      10.1002/dvdy.243

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Retinoic Acid Signaling Regulates the Metamorphosis of Feather Stars (Crinoidea, Echinodermata): Insight into the Evolution of the Animal Life Cycle2020

    • Author(s)
      Yamakawa Shumpei、Morino Yoshiaki、Kohtsuka Hisanori、Wada Hiroshi
    • Journal Title

      Biomolecules

      Volume: 10 Issue: 1 Pages: 37-37

    • DOI

      10.3390/biom10010037

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of Metamorphosis by Environmental Cues and Retinoic Acid Signaling in the Lecithotrophic Larvae of the Starfish Astropecten latespinosus2019

    • Author(s)
      Yamakawa Shumpei、Morino Yoshiaki、Honda Masanao、Wada Hiroshi
    • Journal Title

      The Biological Bulletin

      Volume: 237 Issue: 3 Pages: 213-226

    • DOI

      10.1086/706039

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed
  • [Presentation] Interplay of the 2q-specific factors and within-lineage interactions in the SHELL field fate establishment2023

    • Author(s)
      Supanat Phuangphong, Yoshiaki Morino and Hiroshi Wada
    • Organizer
      日本発生生物学会第56回大会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ウニ胚発生におけるPmar1- HesC 二重抑制機構の進化と klf2/4 の役割2023

    • Author(s)
      Nina Levine, Natalia Gogoleva, 山川隼平, 守野孔明,和田洋
    • Organizer
      日本動物学会第94回大会
    • Related Report
      2022 Annual Research Report

URL: 

Published: 2018-04-23   Modified: 2025-01-30  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi