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Identification of new natural products targeting cell membrane and analyses of their modes of action.

Research Project

Project/Area Number 18K06717
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 47050:Environmental and natural pharmaceutical resources-related
Research InstitutionThe University of Tokyo

Principal Investigator

Nishimura Shinichi  東京大学, 大学院農学生命科学研究科(農学部), 講師 (30415260)

Project Period (FY) 2018-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2020: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords生理活性化合物 / 天然物 / 生体膜 / 膜脂質 / 天然物化学 / 生体膜脂質
Outline of Final Research Achievements

Compounds that target the cell membrane with unique modes of action were explored from natural sources. First, 5aTHQs, actinomycete metabolites, were revealed to form aggregates and bind to lipid membranes. Notably, their membrane binding and anti-yeast activities were enhanced when congeners were mixed. This seems to explain why congeners of natural products are produced. Next, amantelide A, a marine cyanobacterial metabolite, was found to bind to lipid membranes containing sterols. Its molecular mechanism for the sterol recognition seems to be novel. Third, amphiol, an antifungal fungal pigment, was discovered. This compound may target fungal cell membrane although a precise analysis remains to be done. In addition to these findings, unique bioactivities of unusual fatty acids were investigated to suggest a highly specific molecular target for these molecules.

Academic Significance and Societal Importance of the Research Achievements

生体膜を構成する膜脂質はゲノムに直接コードされておらず解析手法に限りがあることから、その機能の理解は遅れています。一方で膜脂質は感染症治療薬の標的であり、新しい膜脂質標的型の化合物が求められています。本研究では膜脂質に作用して抗真菌活性を示す新しい生理活性化合物を取得し、それらのユニークな表現型と作用メカニズムの一端を解明しました。取得した化合物を用いた膜脂質の機能理解と抗真菌剤開発への貢献が期待されます。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (30 results)

All 2021 2020 2019 2018 Other

All Int'l Joint Research (2 results) Journal Article (8 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 5 results) Presentation (20 results) (of which Int'l Joint Research: 3 results,  Invited: 8 results)

  • [Int'l Joint Research] University of Florida(米国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] フロリダ大学/スクリプス海洋研究所(米国)

    • Related Report
      2018 Research-status Report
  • [Journal Article] Amphiol, an antifungal pigment from Pseudogymnoascus sp. PF14642021

    • Author(s)
      Fujita, K., Ikuta, M., Nishimura, S., Sugiyama, R., Yoshimura, A., Kakeya, H.
    • Journal Title

      J. Nat. Prod.

      Volume: - Issue: 4 Pages: 986-992

    • DOI

      10.1021/acs.jnatprod.0c01010

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomic and Targeted Approaches Unveil the Cell Membrane as a Major Target of the Antifungal Cytotoxin Amantelide A2021

    • Author(s)
      Elsadek Lobna A.、Matthews James H.、Nishimura Shinichi、Nakatani Takahiro、Ito Airi、Gu Tongjun、Luo Danmeng、Salvador‐Reyes Lilibeth A.、Paul Valerie J.、Kakeya Hideaki、Luesch Hendrik
    • Journal Title

      ChemBioChem

      Volume: in press Issue: 10 Pages: 1790-1799

    • DOI

      10.1002/cbic.202000685

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 天然物による細胞膜ステロールの分子認識と可視化への応用2021

    • Author(s)
      西村慎一
    • Journal Title

      細胞

      Volume: 53 Pages: 32-35

    • NAID

      40022520030

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Chemical diversity and mode of action of natural products targeting lipids in the eukaryotic cell membrane2020

    • Author(s)
      Nishimura, S. & Matsumori, N.
    • Journal Title

      Nat. Prod. Rep.

      Volume: 37 Issue: 5 Pages: 677-702

    • DOI

      10.1039/c9np00059c

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Isolation, Structure Elucidation, and Conformational Regulation of Myropeptins, Lipopeptides from the Fungus Myrothecium roridum.2019

    • Author(s)
      Yoshimura, A., Nishimura, S.*, Suzuki, T., Hattori, A., Dohmae, N., Kato, T. & Kakeya, H.
    • Journal Title

      Org. Lett.

      Volume: 21 Issue: 18 Pages: 7524-7528

    • DOI

      10.1021/acs.orglett.9b02801

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Chemical Interactions of Cryptic Actinomycete Metabolite 5‐Alkyl‐1,2,3,4‐tetrahydroquinolines through Aggregate Formation2019

    • Author(s)
      Sugiyama Ryosuke、Nakatani Takahiro、Nishimura Shinichi、Takenaka Kei、Ozaki Taro、Asamizu Shumpei、Onaka Hiroyasu、Kakeya Hideaki
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 58 Issue: 38 Pages: 13486-13491

    • DOI

      10.1002/anie.201905970

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] ビーチまで徒歩10秒.スクリプス海洋研究所で天然物化学を考える.2019

    • Author(s)
      西村慎一
    • Journal Title

      MEDCHEM NEWS

      Volume: 29 Pages: 8-12

    • NAID

      130007981710

    • Related Report
      2018 Research-status Report
  • [Journal Article] 生体膜を標的にする天然有機化合物 -天然物による厳密な脂質認識とそれに基づく表現型-2018

    • Author(s)
      西村慎一, 掛谷秀昭 & 松森信明.
    • Journal Title

      化学と生物

      Volume: 56 Pages: 678-685

    • NAID

      130007709540

    • Related Report
      2018 Research-status Report
  • [Presentation] 奇数鎖脂肪酸は分裂酵母において細胞膜極性と細胞分裂に異常を引き起こす.2021

    • Author(s)
      星川陽次郎、西村慎一、松山晃久、Li Sheena、八代田陽子、Boone Charles、吉田 稔.
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] ステロール標的型天然物を用いた細胞極性とステロールの関係性の探索.2021

    • Author(s)
      中尾拳典、菅長昭文、西村慎一、松山晃久、吉田稔.
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 奇数鎖脂肪酸は分裂酵母において細胞分裂異常を引き起こす.2020

    • Author(s)
      星川陽次郎、西村慎一、松山晃久、Sheena Li、八代田陽子、Charles Boone、吉田稔.
    • Organizer
      第43回 日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 生体膜を標的にする抗真菌化合物の探索と作用機序に関する研究.2020

    • Author(s)
      西村慎一.
    • Organizer
      メディカルサイエンスセミナー.
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 細胞膜ステロールを標的にする抗真菌化合物が引き起こす細胞壁異常の分子機構解析.2020

    • Author(s)
      西村慎一.
    • Organizer
      第93回日本生化学会大会 シンポジウム「代謝物再興:生命機能におけるエピゲノムとダイナミズムの制御因子」
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 炭素鎖長15の脂肪酸とそのモノアシルグリセロール体は分裂酵母の細胞分裂異常を引き起こす.2020

    • Author(s)
      星川陽次郎、西村慎一、松山晃久、Sheena Li、八代田陽子、Charles Boone、吉田稔.
    • Organizer
      第62回 日本脂質生化学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Chemical Interactions of Actinomycete Metabolite 5-Alkyl-1,2,3,4-tetrahydroquinolines through Aggregate Formation.2020

    • Author(s)
      Shinichi Nishimura, Ryosuke Sugiyama, Takahiro Nakatani, Kei Takenaka, Taro Ozaki, Shumpei Asamizu, Hiroyasu Onaka, & Hideaki Kakeya.
    • Organizer
      Gordon Research Conference -Marine Natural Products-
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 微生物二次代謝物のインタープレイ2019

    • Author(s)
      西村慎一
    • Organizer
      新学術領域研究「化学コミュニケーションのフロンティア」第4回若手シンポジウム
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] ステロールを標的にする抗真菌化合物セオネラミドによる細胞壁異常.2019

    • Author(s)
      西村慎一, 菅長昭文, 松山晃久, 吉田稔, 徳倉将人, 掛谷秀昭 , 松永茂樹, 大隅正子, 生瀬義久, Vanessa S. D. Carvalho, Juan C. G. Cortes, Juan. C. Ribas.
    • Organizer
      綜合画像研究支援(IIRS)創立十五周年記念シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] Comprehensive analysis of the mechanism of action of theonellamides, marine-derived antifungals, based on fission yeast ORFeome.2019

    • Author(s)
      Shinichi Nishimura, Akifumi Suganaga, Akihisa Matsuyama & Minoru Yoshida.
    • Organizer
      Cold Spring Harbor Asia Conference, Chemical Biology & Drug Discovery
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 海洋天然物セオネラミドを用いた生体膜脂質の機能解析.2019

    • Author(s)
      西村慎一.
    • Organizer
      第7回 バイオ関連化学シンポジウム若手フォーラム
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Chemical genetic analysis of sterol-regulated proteins using fission yeast ORFeome.2019

    • Author(s)
      Shinichi NISHIMURA, Akifumi SUGANAGA, Akihisa MATSUYAMA & Minoru YOSHIDA.
    • Organizer
      10th International Fission Yeast Meeting Pombe 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] ステロールの機能変調により局在変化を受ける分裂酵母タンパク質の網羅的探索.2019

    • Author(s)
      西村慎一、菅長昭文、松山晃久、吉田稔.
    • Organizer
      第60回 日本脂質生化学会
    • Related Report
      2019 Research-status Report
  • [Presentation] 分裂酵母ORFeomeを利用した海洋天然物セオネラミドの作用機序研究.2019

    • Author(s)
      菅長昭文、西村慎一、松山晃久、吉田稔.
    • Organizer
      第19回 東京大学生命科学シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] 特殊脂肪酸とそのモノアシルグリセロール体が示す抗真菌活性の作用機序の解明.2019

    • Author(s)
      星川陽次郎、西村慎一、Sheena Li、八代田陽子、Charles Boone、吉田稔.
    • Organizer
      第19回 東京大学生命科学シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] 海洋天然物セオネラミドによるステロールの可視化と機能変調2019

    • Author(s)
      西村慎一
    • Organizer
      日本農芸化学会2019年度大会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 微生物の複合培養で得られる5aTHQの膜親和性と生物活性.2018

    • Author(s)
      西村慎一、杉山龍介、仲谷崇宏、尾崎太郎、浅水俊平、尾仲宏康、掛谷秀昭.
    • Organizer
      第60回 天然有機化合物討論会
    • Related Report
      2018 Research-status Report
  • [Presentation] 真菌膜脂質の機能攪乱分子を用いたケミカルバイオロジー:於京都 -> サンディエゴ -> 東京2018

    • Author(s)
      西村慎一
    • Organizer
      第29回 新薬創製談話会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 分裂酵母をもちいた生体膜標的型分子の探索と機能解析2018

    • Author(s)
      西村慎一
    • Organizer
      第194回 酵母細胞研究会例会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 放線菌代謝産物5aTHQが示す膜親和性2018

    • Author(s)
      西村慎一
    • Organizer
      第9回発酵学フォーラム
    • Related Report
      2018 Research-status Report
    • Invited

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Published: 2018-04-23   Modified: 2022-01-27  

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