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Overview of the regulation of skeletal muscle metabolism based on comprehensive molecular quantification

Research Project

Project/Area Number 18K15011
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 48020:Physiology-related
Research InstitutionKyushu University

Principal Investigator

Matsuzaki Fumiko  九州大学, 生体防御医学研究所, 助教 (10631773)

Project Period (FY) 2018-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2020: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords骨格筋 / インスリン / マルチオミクス / 代謝 / プロテオミクス / 微分方程式モデル
Outline of Final Research Achievements

In this project, skeletal muscle composition was analyzed in terms of molecular concentration/proportion, and their temporal variation over four hours after insulin administration. A molecular interaction network consisting of approximately 10,000 insulin-responsive molecules (nodes) was constructed based on this analysis. This network illustrates about 20,000 interactions (edges) among metabolites, RNAs, and proteins that changed in their phosphorylation or expression levels. Such a comprehensive analysis provided an overview of major regulatory processes within skeletal muscles in response to insulin. Our investigation model enabled the design of scalable methods that could integrate multiple sources to characterize and visualize biologically relevant molecular interactions.

Academic Significance and Societal Importance of the Research Achievements

網羅的な分子定量から分子間相互作用ネットワークの構築・特徴解析・可視化までのワークフローの開発により、大規模データと既存知識を統合して生物組織において誘導される分子制御の全体像の理解が可能になった。このアプローチは拡張性が高いことから、適用範囲は骨格筋代謝に限らない。今後、より幅広い生命現象の制御メカニズム理解への応用が期待される。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (17 results)

All 2022 2021 2020 2019 2018 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (13 results) (of which Int'l Joint Research: 8 results,  Invited: 3 results) Book (1 results) Remarks (2 results)

  • [Journal Article] An extensive and dynamic trans-omic network illustrating prominent regulatory mechanisms in response to insulin in the liver2021

    • Author(s)
      Matsuzaki Fumiko、Uda Shinsuke、Yamauchi Yukiyo、Matsumoto Masaki、Soga Tomoyoshi、Maehara Kazumitsu、Ohkawa Yasuyuki、Nakayama Keiichi I.、Kuroda Shinya、Kubota Hiroyuki
    • Journal Title

      Cell Reports

      Volume: 36 Issue: 8 Pages: 109569-109569

    • DOI

      10.1016/j.celrep.2021.109569

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Trans-omic analysis of insulin response in the liver2022

    • Author(s)
      Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Masaki Matsumoto, Tomoyoshi Soga, Kazumitsu Maehara, Yasuyuki Ohkawa, Keiichi I. Nakayama, Shinya Kuroda, Hiroyuki Kubota
    • Organizer
      The 31st Hot Spring Harbor International Symposium: Expanding views on Systems biology and Immunology
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] トランスオミックネットワーク作成による分子制御機構の可視化2022

    • Author(s)
      松崎芙美子, 湯通堂紀子, 山内幸代, 宇田新介, 和泉自泰, 高橋政友, 中尾素直, 油屋駿介, 馬場健史, 曽我朋義, 菊竹智恵, 須山幹太, 原田哲仁, 前原一満, 大川恭行, 松本雅記, 中山敬一, 黒田真也, 久保田浩行
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Trans-omic analysis of insulin response in the liver2022

    • Author(s)
      Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Hiroyuki Kubota
    • Organizer
      International Symposium on Evolutionary Genomics and Bioinformatics 2022 (ISEGB2022)
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 肝臓インスリン応答の時系列トランスオミクス解析2021

    • Author(s)
      松崎芙美子
    • Organizer
      IIBMP2021(2021年日本バイオインフォマティクス学会年会 第10回生命医薬情報学連合大会)
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] 時系列トランスオミクス解析2020

    • Author(s)
      松崎芙美子, 宇田新介, 山内幸代, 松本雅記, 曽我朋義, 前原一満, 大川恭行, 中山敬一, 黒田真也, 久保田浩行
    • Organizer
      IIBMP2020(2020年日本バイオインフォマティクス学会年会 第9回生命医薬情報学連合大会)
    • Related Report
      2020 Research-status Report
  • [Presentation] Integrated analysis through multiple molecular layers: transomic network dynamics2020

    • Author(s)
      Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Masaki Matsumoto, Tomoyoshi Soga, Kazumitsu Maehara, Yasuyuki Ohkawa, Keiichi I. Nakayama, Shinya Kuroda, Hiroyuki Kubota
    • Organizer
      The 29th Hot Spring Harbor International Symposium, Cutting Edge of Technical Innovations in Trans-Omics
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] 時系列トランスオミクス解析2019

    • Author(s)
      松崎芙美子, 宇田新介, 山内幸代, 松本雅記, 曽我朋義, 前原一満, 大川恭行, 中山敬一, 黒田真也, 久保田浩行
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Time Series Transomics: Integrated analysis through multiple molecular layers2019

    • Author(s)
      Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Masaki Matsumoto, Tomoyoshi Soga, Kazumitsu Maehara, Yasuyuki Ohkawa, Keiichi I. Nakayama, Shinya Kuroda, Hiroyuki Kubota
    • Organizer
      The 20th International Conference on Systems Biology
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Time Series Transomics: Integrated analysis through multiple molecular layers2019

    • Author(s)
      Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Masaki Matsumoto, Keiichi I. Nakayama, Hiroyuki Kubota
    • Organizer
      1st International symposium on interdisciplinary approaches to integrative understanding of biological signaling networks
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Time Series Transomics: Integrated analysis through multiple molecular layers2019

    • Author(s)
      Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Hiroyuki Kubota
    • Organizer
      2nd Diversity Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 時系列トランスオミクス解析2019

    • Author(s)
      松崎芙美子, 宇田新介, 山内幸代, 黒田真也, 久保田浩行
    • Organizer
      定量生物学の会 第九回年会
    • Related Report
      2018 Research-status Report
  • [Presentation] TRANSOMICS: Integrated Analysis Through Multiple Molecular Layers2018

    • Author(s)
      Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Hiroyuki Kubota
    • Organizer
      The 19th International Conference on Systems Biology
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] TRANSOMICS: Integrated Analysis Through Multiple Molecular Layers2018

    • Author(s)
      Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Kazumitsu Maehara, Yasuyuki Ohkawa, Masaki Matsumoto, Keiichi I. Nakayama, Hiroyuki Kubota
    • Organizer
      The Joint Symposium of the 13th International Symposium of the Institute Network for Biomedical Sciences and the 28th Hot Spring Harbor International Symposium 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Book] 疾患原因遺伝子・タンパク質の解析技術と創薬/診断技術への応用2022

    • Author(s)
      執筆者:81名、技術情報協会
    • Total Pages
      530
    • Publisher
      技術情報協会
    • ISBN
      9784861048777
    • Related Report
      2021 Research-status Report
  • [Remarks] 九州大学 生体防御医学研究所 統合オミクス分野

    • URL

      https://www.bioreg.kyushu-u.ac.jp/labo/omics/

    • Related Report
      2022 Annual Research Report 2021 Research-status Report
  • [Remarks] 九州大学 生体防御医学研究所 統合オミクス分野

    • URL

      http://www.bioreg.kyushu-u.ac.jp/labo/omics/

    • Related Report
      2020 Research-status Report 2019 Research-status Report 2018 Research-status Report

URL: 

Published: 2018-04-23   Modified: 2024-01-30  

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