• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Improvement in a E. coli host cell for DNA cloning of long DNA fragments.

Research Project

Project/Area Number 18K19193
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 38:Agricultural chemistry and related fields
Research InstitutionNational Institute of Genetics

Principal Investigator

NIKI Hironori  国立遺伝学研究所, 遺伝形質研究系, 教授 (70208122)

Project Period (FY) 2018-06-29 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2019: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2018: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords形質転換体 / クローニング / オメガ因子 / RNAポリメラーゼ / iVEC / ゲノム / 遺伝子組換え / 形質転換 / DNA クローニング / 大腸菌宿主 / ゲノム合成
Outline of Final Research Achievements

In the in vivo cloning (iVEC) method, a recombinant clone can be obtained simply by transforming the vector DNA and the cloned DNA, which are PCR products with homologous sequences, into an Escherichia coli cell. This technique has the advantage that seamless cloning can be performed inexpensively and quickly. We conducted a genetic elucidation of the molecular mechanism of the in vivo cloning and aimed to develop an Escherichia coli strain with high transformation efficiency to improve this activity. In the search for genes related to high transformation efficiency, genes involved in transformation were found. We found the rpoZ gene as a candidate gene that improves transformation efficiency. The rpoZ gene regulates gene groups whose expression is involved in transformation efficiency.

Academic Significance and Societal Importance of the Research Achievements

in vivoクローニング(iVEC)法の分子メカニズムの遺伝学的な解明を行った。in vivoクローニングの分子メカニズムには3’-5’エンドヌクレアーゼXthAが必須であった。XthAはDNAの3’末端から二本鎖DNAを一本鎖DNAが露出し、相同な一本鎖 DNA同士がアニーリングをさせる活性であることを明らかにした。これを元により高効率な方法への改善が期待され、形質転換の向上を同時に進めることでさらなる組換えDNA技術の発展が見込まれる。

Report

(4 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • Research Products

    (3 results)

All 2018

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (1 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Exonuclease III (XthA) Enforces In Vivo DNA Cloning of Escherichia coli To Create Cohesive Ends2018

    • Author(s)
      Nozaki Shingo、Niki Hironori
    • Journal Title

      Journal of Bacteriology

      Volume: 201 Issue: 5 Pages: 1-13

    • DOI

      10.1128/jb.00660-18

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Exonuclease III promotes in vivo DNA cloning of Escherichia coli due to production of cohesive ends2018

    • Author(s)
      Niki, Hironori
    • Organizer
      DNA Transactions and Physical and Molecular Biology of Chromosomes Workshop 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Patent(Industrial Property Rights)] インビボクローニング可能な細胞株をスクリーニングするための方法、インビボクローニング可能な細胞株の製造方法、細胞株、インビボクローニング方法、及びインビボクローニングを行うためのキット2018

    • Inventor(s)
      仁木宏典、野崎晋吾
    • Industrial Property Rights Holder
      情報・システム研究機構
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-087164
    • Filing Date
      2018
    • Related Report
      2018 Research-status Report

URL: 

Published: 2018-07-25   Modified: 2022-01-27  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi