• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Structural biology of ion transporters

Research Project

Project/Area Number 19002013
Research Category

Grant-in-Aid for Specially Promoted Research

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo

Principal Investigator

TOYOSHIMA Chikashi  東京大学, 分子細胞生物学研究所, 教授 (70172210)

Co-Investigator(Kenkyū-buntansha) OGAWA Haruo  東京大学, 分子細胞生物学研究所, 准教授 (40292726)
TSUDA Takeo  東京大学, 分子細胞生物学研究所, 助教 (10345233)
KONDOU Youhei  東京大学, 分子細胞生物学研究所, 助教 (30436604)
ISHIKITA Hiroshi  東京大学, 分子細胞生物学研究所, 助教 (00508111)
Co-Investigator(Renkei-kenkyūsha) MIMURA Hisatoshi  東京大学, 分子細胞生物学研究所, 助教 (30463904)
KANAI Ryuta  東京大学, 分子細胞生物学研究所, 助教 (50598472)
Project Period (FY) 2007 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥547,040,000 (Direct Cost: ¥420,800,000、Indirect Cost: ¥126,240,000)
Fiscal Year 2011: ¥83,200,000 (Direct Cost: ¥64,000,000、Indirect Cost: ¥19,200,000)
Fiscal Year 2010: ¥116,350,000 (Direct Cost: ¥89,500,000、Indirect Cost: ¥26,850,000)
Fiscal Year 2009: ¥116,350,000 (Direct Cost: ¥89,500,000、Indirect Cost: ¥26,850,000)
Fiscal Year 2008: ¥115,180,000 (Direct Cost: ¥88,600,000、Indirect Cost: ¥26,580,000)
Fiscal Year 2007: ¥115,960,000 (Direct Cost: ¥89,200,000、Indirect Cost: ¥26,760,000)
Keywordsイオンポンプ / 膜蛋白質 / 結晶解析
Research Abstract

In living organisms, concentrations of ions differ substantially across the membranes and form the basis for biological activity such as nerve excitation and muscle contraction. Such differences in ion concentrations are maintained by ion pump proteins, which reside in biological membrane. In this research project, we focused on the calcium and the sodium pumps, and carried out the crystal structure analyses of the reaction intermediates, development of a high yield expression system of mammalian membrane proteins, and that of methods for visualizing biological membranes in the crystals, aiming at the complete understanding of the mechanism and development of drugs for the ion pumps.

Report

(10 results)
  • 2016 Abstract(Follow-up Assessment) ( PDF )   Self-evaluation (Follow-up Assessment) ( PDF )   Comments (Follow-up Assessment) ( PDF )
  • 2011 Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report   Self-evaluation Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Products Report
  • Research Products

    (54 results)

All 2011 2010 2009 2008 2007 Other

All Journal Article (35 results) (of which Peer Reviewed: 31 results) Presentation (16 results) Remarks (3 results)

  • [Journal Article] Cornelius : First crystal structures of Na+, K^+-ATPase : New light on the oldestion pump2011

    • Author(s)
      C. Toyoshima, R. Kanai and F
    • Journal Title

      Structure

      Volume: 19 Pages: 1732-1738

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca^<2+>-ATPase in the absence of Ca^<2+>2011

    • Author(s)
      C. Toyoshima, S. Yonekura, J. Tsueda and S. Iwasawa
    • Journal Title

      Proc. Nat. Acad. Sci. USA

      Volume: 108 Pages: 1833-1838

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Trinitrophenyl-derivatives bind differently from parent adenine nucleotides to Ca^<2+>-ATPase in the absence of Ca^<2+>2011

    • Author(s)
      C.Toyoshima
    • Journal Title

      Proc.Nat.Acad.Sci.USA.

      Volume: 108 Pages: 1833-1838

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] イオンポンプ(P型ATPase)の構造生物学2011

    • Author(s)
      豊島近
    • Journal Title

      放射光

      Volume: 24 Pages: 2-9

    • NAID

      10027411840

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Relationship betweenCa^<2+>-affinity and shielding of bulk water in the Ca^<2+>-pump from molecular dynamics simulations2010

    • Author(s)
      Y. Sugita, M. Ikeguchi, and C
    • Journal Title

      Proc. Nat. Acad. Sci. USA

      Volume: 107 Pages: 21465-21469

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Relationship between Ca^<2+>-affinity and shielding of bulk water in the Ca^<2+>-pump from molecular dynamics simulations.2010

    • Author(s)
      Y.Sugita
    • Journal Title

      Proc.Nat.Acad.Sci.USA.

      Volume: 107 Pages: 21465-21469

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of thesodium-potassium pump(Na^+, K^+-ATPase) withbound potassium and ouabain2009

    • Author(s)
      H. Ogawa, T. Shinoda, F. Cornelius and C. Toyoshima
    • Journal Title

      Proc. Nat. Acad. Sci. USA

      Volume: 106 Pages: 13742-13747

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nucleotide recognition by CopA, a Cu+-transporting P-type ATPase2009

    • Author(s)
      T. Tsuda and C. Toyoshima
    • Journal Title

      EMBO J

      Volume: 28 Pages: 1782-1791

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the sodium-potassium pump at 2. 4 A resolution2009

    • Author(s)
      T. Shinoda, H. Ogawa, F. Cornelius and C. Toyoshima
    • Journal Title

      Nature

      Volume: 459 Pages: 446-450

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal tructure of the sodium-potassium pump (Na+, K+-ATPase)with bound potassium and ouabain.2009

    • Author(s)
      H. Ogawa, T. Shinoda, F. Cornelius, C. Toyoshima
    • Journal Title

      Proc. Nat. Acad. Sci. USA 106

      Pages: 13742-13747

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Nucleotide recognition by CopA, a Cu+-transporting P-type ATPase.2009

    • Author(s)
      T. Tsuda, C. Toyoshima
    • Journal Title

      EMBO J. 28

      Pages: 1782-1791

    • Related Report
      2009 Self-evaluation Report
  • [Journal Article] Crystal structure of the sodium-potassium pump at 2. 4 A resolution.2009

    • Author(s)
      T. Shinoda, H. Ogawa, F. Cornelius, C. Toyoshima
    • Journal Title

      Nature 459

      Pages: 446-450

    • Related Report
      2009 Self-evaluation Report
  • [Journal Article] Crystal structure of the sodium-potassium pump(Na^+, K^+-ATPase)with bound potassium and ouabain2009

    • Author(s)
      H.Ogawa
    • Journal Title

      Proc.Nat.Acad.Sci.USA 106

      Pages: 13742-13747

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nucleotide recognition by CopA, a Cu^+-transporting P-type ATPase2009

    • Author(s)
      T.Tsuda
    • Journal Title

      EMBO J. 28

      Pages: 1782-1791

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the sodium-potassium pump at 2.4Å resolution2009

    • Author(s)
      T.Shinoda
    • Journal Title

      Nature 459

      Pages: 446-450

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reaction cycle of Thermotoga maritima copper ATPase and comformational characterization of catalytically deficient mutants2009

    • Author(s)
      Y.Hatori
    • Journal Title

      Biochemistry 48

      Pages: 4871-4880

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] How Ca^<2+>-ATPase pumps ions across the sarcoplasmic reticulum membrane2009

    • Author(s)
      C.Toyoshima
    • Journal Title

      Biochem.Biophys.Acta 1793

      Pages: 941-946

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the sodium-potassium pump at 2.4 Å resolution.2009

    • Author(s)
      T. Shinoda, et al
    • Journal Title

      Nature

      Volume: 459 Pages: 446-450

    • Related Report
      Products Report
    • Peer Reviewed
  • [Journal Article] Conformationalfluctuations of the Ca^<2+>-ATPase in thenative membrane environment2008

    • Author(s)
      G. Inesi, D. Lewis, C. Toyoshima, A. Hirata and L. de Meis
    • Journal Title

      J. Biol. Chem

      Volume: 283 Pages: 1189-1196

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural aspects of ion pumping by Ca2+-ATPase of sarcoplasmic reticulum.2008

    • Author(s)
      C. Toyoshima
    • Journal Title

      Arch. Biochem. Biophys. 476

      Pages: 3-11

    • Related Report
      2009 Self-evaluation Report
  • [Journal Article] Structural aspects of ion pumping by Ca^<2+>-ATPase of sarcoplasmic reticulum2008

    • Author(s)
      C. Toyoshima
    • Journal Title

      Arch. Biochem. Biophys 476

      Pages: 3-11

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interaction sites among phospholamban, sarcolipin, and the sarco(endo) plasmic reticulum Ca^<2+>-ATPase2008

    • Author(s)
      T. Morita
    • Journal Title

      Biochem. Biophys. Res. Comm. 369

      Pages: 188-194

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intermediate phosphorylation reactions in the mechanism of ATP utilization by the copper ATPase (CopA) of Thermotoga maritima2008

    • Author(s)
      Y. Hatori
    • Journal Title

      J. Biol. Chem. 283

      Pages: 22541-22549

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Critical role of Val-304 in conformational transitions that allow Ca^<2+> occlusion and phosphoenzyme turnover in the Ca^<2+> transport ATPase2008

    • Author(s)
      C Xu
    • Journal Title

      J. Biol. Chem. 283

      Pages: 3297-3304

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conformational fluctuations of the Ca^<2+>-ATPase in the native membrane environment-Effects of pH, temperature, catalytic substrates, and thapsigargin2008

    • Author(s)
      G. Inesi
    • Journal Title

      J.Biol.Chem 283

      Pages: 1189-1196

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conformational fluctuations of the Ca^<2+>-ATPase in the native membrane environm ent-Effects of pH, temperature, catalytic substrates, and thapsigargin.2008

    • Author(s)
      G. Inesi
    • Journal Title

      J. Biol. Chem 283

      Pages: 1189-1196

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Critical role of Val-304 in conformational transitions that allow Ca^<2+> occlusion and phosphoenzyme turnover in the Ca^<2+> transport ATPase.2008

    • Author(s)
      C Xu
    • Journal Title

      J. Biol. Chem. 283

      Pages: 3297-3304

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] How processing ofaspartylphosphate is coupled to lumenalgating of the ion pathway in the calciumpump2007

    • Author(s)
      C. Toyoshima, Y. Norimatsu, S. Iwasawa, T. Tsuda and H. Ogawa
    • Journal Title

      Proc. Nat. Acad. Sci.

      Volume: 104 Pages: 19831-19836

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Domain organization and movements in heavy metal ion pumps : Papain digestion of CopA, a Cu^+-transporting ATPase2007

    • Author(s)
      Y. Hatori, E. Majima, T. Tsuda and C. Toyoshima
    • Journal Title

      J. Biol. Chem

      Volume: 282 Pages: 25213-25221

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Interdomain communication incalcium pump as revealed in the crystalstructures with transmembrane inhibitors2007

    • Author(s)
      M. Takahashi, Y. Kondou and C. Toyoshima
    • Journal Title

      Proc. Nat. Acad. Sci.

      Volume: 104 Pages: 5800-5805

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] How processing of aspartylphosphate is coupled to lumenal gating of the ion pathway in the calcium pump.2007

    • Author(s)
      C. Toyoshima, Y. Norimatsu, S. Iwasawa, T. Tsuda, H. Ogawa
    • Journal Title

      Proc. Nat. Acad. Sci. USA. 104

      Pages: 19831-19836

    • Related Report
      2009 Self-evaluation Report
  • [Journal Article] How processing of aspartylphosphate is coupled to lumenal gating of the ion pathway in the calcium pump2007

    • Author(s)
      C. Toyoshima
    • Journal Title

      Proc. Nat. Acad. Sci. USA. 104

      Pages: 19831-19836

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Domain organization and movements in heavy metal ion pumps: Papain digestion of CopA, a Cu^+-transporting ATPase2007

    • Author(s)
      Y. Hatori
    • Journal Title

      J. Biol. Chem. 282

      Pages: 25213-25221

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the sodium-potassium pump at 2.4 A resolution

    • Author(s)
      T. Shinoda
    • Journal Title

      Nature (掲載確定)(in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] How Ca^<2+>-ATPase pumps ions across the sarcoplasmic reticulum membrane

    • Author(s)
      C. Tovoshima
    • Journal Title

      Biochem. Biophys. Acta (掲載確定)(in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Do lipid bilayers followmovements of transmembrane helices? If so, to what extent2011

    • Author(s)
      C. Toyoshima
    • Organizer
      The EMBO Meeting
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2011-09-12
    • Related Report
      2011 Final Research Report
  • [Presentation] A Structural view on ion pumping by Ca^<2+>-ATPase.2010

    • Author(s)
      C.Toyoshima
    • Organizer
      2010FASEB Summer Research Conferences
    • Place of Presentation
      Snowmass Village, Colorado USA
    • Year and Date
      2010-06-06
    • Related Report
      2010 Annual Research Report
  • [Presentation] 放射光が明らかにするCa^<2+>ポンプのイオン輸送機構2010

    • Author(s)
      豊島近
    • Organizer
      ノーベル化学賞記念シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2010-03-06
    • Related Report
      2009 Annual Research Report
  • [Presentation] A structural view on ionpumping by Ca^<2+>-ATPase2010

    • Author(s)
      C. Toyoshima
    • Organizer
      FASEB SummerResearch Conferences, Transport ATPase : From molecules to maladies
    • Place of Presentation
      Snowmass, Colorado, USA(Key Note Lecture)
    • Related Report
      2011 Final Research Report
  • [Presentation] 結晶構造から見たCa^<2+>-ATPaseのイオン輸送・エネルギー変換機構2009

    • Author(s)
      豊島近
    • Organizer
      日本生体エネルギー研究会第35回討論会
    • Place of Presentation
      旭川
    • Year and Date
      2009-12-19
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structural aspects of cation pumping by P-type ATPase2009

    • Author(s)
      豊島近
    • Organizer
      XXXVI International Congress of Physiological Sciences
    • Place of Presentation
      京都
    • Year and Date
      2009-07-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] A Molecular Machine at Works : The Case of the Calcium Pump Protein2008

    • Author(s)
      C. Toyoshima
    • Organizer
      Maestro Lectures on Structure and Function of Membrane Proteins
    • Place of Presentation
      台湾・台北市
    • Year and Date
      2008-11-20
    • Related Report
      2008 Annual Research Report
  • [Presentation] How Ca2+ATPase pumps ionsacross the sarcoplasmic reticulummembrane2008

    • Author(s)
      C. Toyoshima
    • Organizer
      1st Sir Michael BerridgeLecture, 10th Symposium of the EuropeanCalcium Society
    • Place of Presentation
      Leuven, Belgium
    • Year and Date
      2008-09-17
    • Related Report
      2011 Final Research Report
  • [Presentation] How Ca^<2+> ATPase pumps ions across the salcoplasmic reticulum membrane2008

    • Author(s)
      C. Toyoshima
    • Organizer
      第10回欧州カルシウム学会シンポジウム
    • Place of Presentation
      ベルギー・レーベン
    • Year and Date
      2008-09-17
    • Related Report
      2008 Annual Research Report
  • [Presentation] Crystallization of the calcium pump of skeletal muscle sarcoplasmic reticulum2008

    • Author(s)
      C. Toyoshima
    • Organizer
      第21回国際結晶学連合会議
    • Place of Presentation
      大阪市
    • Year and Date
      2008-08-29
    • Related Report
      2008 Annual Research Report
  • [Presentation] A Molecular Machine at Works2008

    • Author(s)
      C. Toyoshima
    • Organizer
      The Case of the Calcium Pump Protein
    • Place of Presentation
      Berkeley, USA
    • Year and Date
      2008-05-01
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] A Molecular Machine at Works : The case of the calcium pump protein2008

    • Author(s)
      C. Toyoshima
    • Organizer
      The Charles M. and Martha HITCHCOCK LECTURES
    • Place of Presentation
      アメリカ・バークレー
    • Year and Date
      2008-05-01
    • Related Report
      2008 Annual Research Report
  • [Presentation] How Ca^<2+>-ATPase Pump ion across the membrane2008

    • Author(s)
      C. Toyoshima
    • Organizer
      SPring-8 GPCR Symposium
    • Place of Presentation
      兵庫県・佐用郡
    • Year and Date
      2008-02-26
    • Related Report
      2008 Annual Research Report
  • [Presentation] Calcium, Proteins, Energy, and Life2008

    • Author(s)
      C. Toyoshima
    • Organizer
      Hitchcock Lecture
    • Place of Presentation
      Berkeley, California, USA
    • Related Report
      2011 Final Research Report
  • [Presentation] How does Ca^<2+>-ATPase pumpions across the membrane2007

    • Author(s)
      C. Toyoshima
    • Organizer
      The LuigiSacconi Memorial Lecture in Chemistry
    • Place of Presentation
      Florence, Italy
    • Year and Date
      2007-12-30
    • Related Report
      2011 Final Research Report
  • [Presentation] How does Ca^<2+>-ATPase pump ions across the membrane?2007

    • Author(s)
      C. Toyoshima
    • Organizer
      The Luigi Sacconi Memorial Lecture in Chemistry
    • Place of Presentation
      イタリア・フローレンス
    • Year and Date
      2007-10-30
    • Related Report
      2007 Annual Research Report
  • [Remarks]

    • URL

      http://www.iam.u-tokyo.ac.jp/StrBiol/

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.iam.u-tokyo.ac.jp/StrBiol/index.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.iam.u-tokyo.ac.jp/StrBiol/index.html

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2007-04-01   Modified: 2018-03-28  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi