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Mechanisms of infra-specific differentiation of plant species with special reference to selective pressure induced by heterogeneous habitats

Research Project

Project/Area Number 19570085
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionKyoto University

Principal Investigator

SETOGUCHI Hiroaki  Kyoto University, 大学院人間・環境学研究科, 准教授 (70206647)

Co-Investigator(Kenkyū-buntansha) OGINUMA Kazuo  高知女子大学, 生活科学部, 教授 (30106794)
小林 史郎  , 財団法人高知県・牧野記念財団, 研究員 (50393434)
Co-Investigator(Renkei-kenkyūsha) OGINUMA Kazuo  高知女子大学, 生活科学部, 教授 (30106794)
Project Period (FY) 2007 – 2008
Project Status Completed (Fiscal Year 2008)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2008: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2007: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords進化 / 多様性 / 光環境 / 緯度傾度 / フィトクロム / 地質固有種 / 蛇紋岩土壌 / 渓流環境 / 自然選択 / 蛇紋岩 / 高山環境 / キク科
Research Abstract

ミヤマタネツケバナで, 緯度傾度に沿って環境からもたらされる自然選択圧がフィトクロム遺伝子群に与える影響について調べた。phyA-phyEまでの塩基配列を解析して、非中立進化を検証した。そしてphyEが緯度傾度に沿って自然選択を受けており, 非同義的置換がPHYドメインに集中して蓄積していた。このことは, 緯度によって異なる光環境に対して適応し, 種内で種内分化が起きていることを示唆している

Report

(3 results)
  • 2008 Annual Research Report   Final Research Report ( PDF )
  • 2007 Annual Research Report
  • Research Products

    (53 results)

All 2009 2008 2007 Other

All Journal Article (39 results) (of which Peer Reviewed: 39 results) Presentation (14 results)

  • [Journal Article] Glacial range expansions and postglacial fragmentations shaped homogenusgenetic structure of Arcterica nana(Maxim.)Makino(Ericaceae)2009

    • Author(s)
      Ikeda H. and Setoguchi H
    • Journal Title

      Journal of Plant Research 122

      Pages: 141-151

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] High mountains in the Japanese archipelago were refugia of arctic alpine plants : phylogeography of Loiseleuria procumbens(L.)Desvaux2009

    • Author(s)
      Ikeda, H. Senni, K., Fujii, N. and Setoguchi, H
    • Journal Title

      Biological Journal of the Linnean Society (in press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic structure among and within populations of serpentine endemic Heteropappus hispidus ssp. Leptocladus(Compositae)2009

    • Author(s)
      Yokoo, T., Kobayashi, S., Fujikawa, S., Oginuma, K., Mitsui, Y., Ikeda, H. and Setoguchi, H
    • Journal Title

      Biochemical Systematics and Ecology (in press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic structure among and within populations of serpentine endemic Heteropappus hispidus ssp. leptocladus (Compositae)2009

    • Author(s)
      Yokoo, T., Kobayashi, S., Fujikawa, S., Oginuma, K., Mitsui, Y., Ikada, H., Setoguchi, H.
    • Journal Title

      Biochemical Systematics and Ecology

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molelular evolution of phytochromes in Cardamine nipponica (Brassicaceas) suggests the involvement of PHYE in local adaptation2009

    • Author(s)
      Ikeda, H., Fujii, N., Setoguchi, H.
    • Journal Title

      Genetics

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Geographical variation in leaflet of Cycas revoluta (Cycadaceae) on the Ryukyu Islands.2009

    • Author(s)
      Kvoda, S., Maeda, Y., Nomura, N. Setoguchi, H.
    • Journal Title

      Journal of Phytogeography and Taxonomy

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic structyre of refugial populations of the temperate plant Shortia rotundifolia (Diapensiaceae) on a subtropical isand2009

    • Author(s)
      Dan, T., Ikeda, H., Mitsui, Y., Isagi, Y., Setoguchi, H.
    • Journal Title

      Conservation Genetics

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of microsatellite loci in Ainsliaea faurieana (Asteraceae), an endemic plant species on Yakushima Island, Japan, and cross-species amplification in closely related taxa.2009

    • Author(s)
      Mitsui, Y., Isagi, Y., Setoguchi, H.
    • Journal Title

      Molecular Ecology Resources

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Glacial range expansions and postglacial fragmentations shaped homogenusgenetic structure of Arcterica nana (Maxim. ) Makino (Ericaceae).2009

    • Author(s)
      Ikeda H., Setoguchi H.
    • Journal Title

      Journal of Plant Research 122

      Pages: 141-151

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High mountains in the Japanese archipelago were refugia of arctic-alpine plants : phylogeography of Loiseleuria procumbens (L. ) Desvaux.2009

    • Author(s)
      Ikeda, H. Senni, K., Fujii, N., Setoguchi, H.
    • Journal Title

      Biological Journal of the Linnean Society

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity and geographical structure of the pitcher plant in New Caledonia : a chloroplast DNA haplotype analysis2008

    • Author(s)
      Kurata, K., Jaffre, T. and Setoguchi, H
    • Journal Title

      American Journal of Botany 95

      Pages: 1632-1644

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Plant-size and leaf dimorphism of vulnerable species Ilex dimorphophylla(Aquifoliacee)on Amamioshima Island in the Ryukyu Archipelago2008

    • Author(s)
      Setoguchi, H., Nakagawa, M. and Momohara, A
    • Journal Title

      Journal of Phytogeography and Taxonomy 56

      Pages: 7-11

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic structure of refugial populations of the temperate plant Shortia rotundifolia(Diapensiaceae)on a subtropical island2008

    • Author(s)
      Dan, T., Ikeda, H., Mitsui, Y., Isagi, Y. and Setoguchi, H
    • Journal Title

      Conservation Genetics (in press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of microsatellite loci in Ainsliaea faurieana(Asteraceae), an endemic plant species on Yakushima Island, Japan, and cross-species amplification in closely related taxa2008

    • Author(s)
      Mitsui, Y., Isagi, Y. and Setoguchi, H
    • Journal Title

      Molecular Ecology Resources (in press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development and characterization of microsatellite loci in the endangered Tricyrtis ishiiana(Convallariaceae), a local endemic plant in Japan2008

    • Author(s)
      Setoguchi, H., Mitsui, Y., Ikeda, H., Nomura, N., Tamura, A
    • Journal Title

      Conservation Genetics (in press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Karyomorphology of Corylopsis glabrecens and C. gotoana endemic to Japan(Hamamelidaceae ; Hamamelidoideae)2008

    • Author(s)
      Kono, Y., Okada, M., Setoguchi, H., Oginuma, K
    • Journal Title

      Chromosome Science 3

      Pages: 27-29

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of microsatellite loci in Shortia rotundifolia (Diapensiaceae), an endangered relict plant on the Ryukyu Islands and Taiwan2008

    • Author(s)
      Dan, T., Mitsui, Y. Isagi, Y. and Setoguchi, H
    • Journal Title

      Conservation Genetics (in press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Multiple sequences of chloroplast and nuclear DNA revealed postglacial range contraction and strong bottleneck in Cardamine nipponica Franch. et Savat2008

    • Author(s)
      Ikeda, H. Senni, K., Fujii, N. and Setoguchi, H
    • Journal Title

      (Brassicaceae). Molecular Ecology 17

      Pages: 3178-3188

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Distinct geographic structure across species units evidenced by chloroplast DNA haplotypes and nuclear ribosomal ITS genotypes of Corylopsis(Hamamelidaceae)in the Japanese islands2008

    • Author(s)
      Yamanaka, M., Kobayashi, S. and Setoguchi, H
    • Journal Title

      Botanical Journal of the Linnean Society 157

      Pages: 501-518

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] High mountains in central Japan were important area for surviving climatic oscillations and genetic divergence of an arctic- alpine plants, Diapensia lapponica L. subsp. Obovata(Fr. Schm.)Hulten(Diapensiaceae)2008

    • Author(s)
      Ikeda, H. Senni, K., Fujii, N. and Setoguchi, H
    • Journal Title

      Plant Systematics and Evolution 272

      Pages: 197-210

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeography of Japanese water crowfoot based on chloroplast DNA haplotypes2008

    • Author(s)
      Koga, K., Kadono, Y. and Setoguchi, H
    • Journal Title

      Aquatic Botany 89

      Pages: 1-8

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeny and biogeography of the genus Ainsliaea(Asteraceae)in the Sino- Japanese Region based on nuclear rDNA and cpDNA sequence data.2008

    • Author(s)
      Mistui, Y., Chen S.T., Zhou, Z.K., Peng, C.I., Deng Y.F., and Setoguchi, H
    • Journal Title

      Annals of Botany 101

      Pages: 111-124

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular phylogeny of the genus Pieris(Ericaceae)with special reference to phylogenetic relationships of insular plants on the Ryukyu Islands2008

    • Author(s)
      Setoguchi, H., Watanabe, W. and Maeda, Y
    • Journal Title

      Plant Systematics and Evolution 270

      Pages: 217-230

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Postglacial range fragmentation is responsible for the current distribution of Potentilla matsumurae (Rosaceae) in the Japanese archipelago2008

    • Author(s)
      Ikeda, H., Senni, K., Fujii, N. and Setoguchi, H
    • Journal Title

      Journal of Biogeography 35

      Pages: 791-800

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity and geographical structure of the pitcher plant in New Caledonia : a chloroplast DNA haplotype analysis.2008

    • Author(s)
      Kurata, K., Jaffre, T., Setoguchi, H.
    • Journal Title

      American Journal of Botany 95

      Pages: 1632-1644

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Plant-size and leaf dimorphism of vulnerable species Ilex dimorphophylla (Aquifoliacee) on Amamioshima Island in the Ryukyu Archipelago.2008

    • Author(s)
      Setoguchi, H., Nakagawa, M., Momohara, A.
    • Journal Title

      Journal of Phytogeography and Taxonomy 56

      Pages: 7-11

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiple sequences of chloroplast and nuclear DNA revealed postglacial range contraction and strong bottleneck in Cardamine nipponica Franch. et Savat. (Brassicaceae).2008

    • Author(s)
      Ikeda, H. Senni, K., Fujii, N., Setoguchi, H.
    • Journal Title

      Molecular Ecology 17

      Pages: 3178-3188

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Karyomorphology of Corylopsis glabrecens and C. gotoana endemic to Japan (Hamamelidaceae ; Hamamelidoideae).2008

    • Author(s)
      Kono, Y., Okada, M., Setoguchi, H., Oginuma, K.
    • Journal Title

      Chromosome Science 3

      Pages: 27-29

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distinct geographic structure across species units evidenced by chloroplast DNA haplotypes and nuclear ribosomal ITS genotypes of Corylopsis (Hamamelidaceae) in the Japanese islands.2008

    • Author(s)
      Yamanaka, M., Kobayashi, S., Setoguchi, H.
    • Journal Title

      Botanical Journal of the Linnean Society 157

      Pages: 501-518

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeny and biogeography of the genus Ainsliaea (Asteraceae) in the Sino-Japanese Region based on nuclear rDNA and cp DNA sequence data.2008

    • Author(s)
      Mistui, Y., et. al. and Setoguchi, H.
    • Journal Title

      Annals of Botany 101

      Pages: 111-124

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular phylogeny of the genus Pieris (Ericaceae) with special reference to phylogenetic relationships of insular plants.2008

    • Author(s)
      Setoguchi, H., Watanabe, W. and Maeda, Y.
    • Journal Title

      Plant Systematics and Evolution 270

      Pages: 217-230

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intraspecific polyploidy of Houttuynia cordata and chromosome number evolution in Saururaceae2007

    • Author(s)
      Oginuma, K., Chen, S.T., Zhou, Z.K., Peng, C.I., Momohara, A. and Setoguchi, H
    • Journal Title

      Chromosome Botany 2

      Pages: 87-91

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] AFLP analysis of stenophylly for leaf productivity : comparison of the anatomy and physiology of a rheophyte, Farfugium japonicum var. luchuence, and a related non-rheophyte, F. japonicum(Asteraceae)2007

    • Author(s)
      Nomura, N., Setoguchi, H., Yasuda, K. and Takaso, T
    • Journal Title

      Canadian Journal of Botany 85

      Pages: 637-643

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic structure of populations of the vulnerable aquatic macrophyte Ranunculus nipponicus(Ranunculaceae)2007

    • Author(s)
      Koga, K., Kadono, Y. and Setoguchi, H
    • Journal Title

      Journal of Plant Research 120

      Pages: 167-174

    • NAID

      10019936472

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeography and refugia of the Japanese endemic alpine plant Phyllodoce nipponica Makino(Ericaceae)2007

    • Author(s)
      Ikeda, H. and Setoguchi, H
    • Journal Title

      Journal of Biogeography 34

      Pages: 169-176

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molelular evolution of phytochromes in Cardamine nipponica(Brassicaceae)suggests the involvement of PHYE in local adaptation

    • Author(s)
      Ikeda, H., Fujii, N. and Setoguchi, H
    • Journal Title

      Genetics (in press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development and characterization of microsatellite loci in Farfugium japonica

    • Author(s)
      Nomura, N., Fujiwara, K., Takaso, T., Ito, M., and Setoguchi, H
    • Journal Title

      Conservation Genetics (in press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of microsatellite loci in Calystegia solandrii

    • Author(s)
      Noda, A., Nomura, N., Mitsui, Y. and Setoguchi, H
    • Journal Title

      Conservation Genetics (in press)

    • Related Report
      2008 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of microsatellite loci in Shortia rotundifolia (Diapensiaceae), an endangered relict plant on the Ryukyu Islands and Taiwan

    • Author(s)
      Dan, T., Mitsui, Y. Isagi, Y. and Setoguchi, H.
    • Journal Title

      Conservation Genetics (in press)

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] PHYE遺伝子によるコメバツガザクラ(Arcterica nana)の系統地理2009

    • Author(s)
      池田啓, 瀬戸口浩彰
    • Organizer
      日本植物分類学会第8回大会
    • Place of Presentation
      東京エレクトロンホール宮城
    • Year and Date
      2009-03-13
    • Related Report
      2008 Annual Research Report
  • [Presentation] (2008)屋久島の渓流帯と林床におけるホソバハグマとキッコウハグマの遺伝的・生理生態的分化 : 浸透性交雑の検証と光合成特性の比較解析2009

    • Author(s)
      三井裕樹・野村尚史・井鷺裕治・戸部博・瀬戸口浩彰
    • Organizer
      日本生態学会第56回大会
    • Place of Presentation
      岩手県立大学(盛岡市)
    • Related Report
      2008 Final Research Report
  • [Presentation] (2008)渓流沿い植物の葉形態変異と分断化淘汰 : ハビタット構造と自然選択2009

    • Author(s)
      野村尚史・藤原健人・伊藤元己・瀬戸口浩彰・高相徳史郎
    • Organizer
      日本生態学会第56回大会
    • Place of Presentation
      岩手県立大学(盛岡市)
    • Related Report
      2008 Final Research Report
  • [Presentation] (2008)PHYE遺伝子によるコメバツガザクラ(Arcterica nana)の系統地理2009

    • Author(s)
      池田啓・瀬戸口浩彰
    • Organizer
      日本植物分類学会第8回大会
    • Place of Presentation
      東京エレクトロンホール宮城(仙台市)
    • Related Report
      2008 Final Research Report
  • [Presentation] (2008)屋久島の渓流帯と林床におけるホソバハグマとキッコウハグマの遺伝的・生理生態的分化 : 浸透性交雑の検証と光合成特性の比較解析2009

    • Author(s)
      三井裕樹・野村尚史・井鷺裕治・戸部博・瀬戸口浩彰
    • Organizer
      日本植物分類学会第8回大会
    • Place of Presentation
      東京エレクトロンホール宮城(仙台市)
    • Related Report
      2008 Final Research Report
  • [Presentation] (2008)琵琶湖に生育するハマヒルガオの長期的隔離と遺伝的特性2009

    • Author(s)
      野田明日香・瀬戸口浩彰
    • Organizer
      日本植物分類学会第8回大会
    • Place of Presentation
      東京エレクトロンホール宮城(仙台市)
    • Related Report
      2008 Final Research Report
  • [Presentation] (2008)ヤエヤマカンアオイにおける花の匂いの発見2009

    • Author(s)
      東浩司・長澤淳一・瀬戸口浩彰
    • Organizer
      日本植物分類学会第8回大会
    • Place of Presentation
      東京エレクトロンホール宮城(仙台市)
    • Related Report
      2008 Final Research Report
  • [Presentation] (2008)日本列島におけるトチノキ(Aesculus turbiana)の系統地理2009

    • Author(s)
      菅原可奈子・金子有子・瀬戸口浩彰
    • Organizer
      日本植物分類学会第8回大会
    • Place of Presentation
      東京エレクトロンホール宮城(仙台市)
    • Related Report
      2008 Final Research Report
  • [Presentation] ミヤマタネツケバナ(Cardamine nipponica)のPHYE光センサードメインにおける南北間での適応心的分化2008

    • Author(s)
      池田啓, 藤井紀行, 瀬戸口浩彰
    • Organizer
      日本植物学会第72回大会
    • Place of Presentation
      高知大学
    • Year and Date
      2008-09-15
    • Related Report
      2008 Annual Research Report
  • [Presentation] Vicariance and Evolutionary History of Cardamine nipponica (Brassicaceae), Japanese endemic alpine plant.2008

    • Author(s)
      Ikeda H, Senni K, Fujii N, Setoguchi H.
    • Organizer
      Botany 2008(アメリカ合衆国植物学会)
    • Place of Presentation
      ブリティッシュコロンビア大学
    • Year and Date
      2008-07-20
    • Related Report
      2008 Annual Research Report
  • [Presentation] (2008)渓流沿い植物ホソバハグマと林床生近縁種キッコウハグマの光合成特性の比較解析2008

    • Author(s)
      三井裕樹・野村尚史・瀬戸口浩彰
    • Organizer
      日本植物学会第72回大会
    • Place of Presentation
      高知大学(高知市)
    • Related Report
      2008 Final Research Report
  • [Presentation] (2008)ミヤマタネツケバナ(Cardamine nipponica)のPHYE光センサードメインにおける南北間での適応的分化2008

    • Author(s)
      池田啓・藤井紀行・瀬戸口浩彰
    • Organizer
      日本植物学会第72回大会
    • Place of Presentation
      高知大学(高知市)
    • Related Report
      2008 Final Research Report
  • [Presentation] (2008)リュウキュウツワブキの表現形多型と選択圧2008

    • Author(s)
      野村尚史・藤原健人・瀬戸口浩彰・伊藤元己・高相徳史郎
    • Organizer
      日本植物学会第72回大会
    • Place of Presentation
      高知大学(高知市)
    • Related Report
      2008 Final Research Report
  • [Presentation] (2008). Vicariance and Evolutionary History of Cardamine nipponica(Brassicaceae), Japanese endemic alpine plant. Botany2008

    • Author(s)
      Ikeda H, Senni K, Fujii N, Setoguchi H
    • Organizer
      2008(アメリカ合衆国植物学会)
    • Place of Presentation
      ブリティッシュコロンビア大学
    • Related Report
      2008 Final Research Report

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Published: 2007-04-01   Modified: 2016-04-21  

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