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Structural study of cytochrome P450-reductase complex to elucidate electron transfer mechanism

Research Project

Project/Area Number 19K06515
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 43020:Structural biochemistry-related
Research InstitutionKurume University

Principal Investigator

Sugishima Masakazu  久留米大学, 医学部, 准教授 (30379292)

Co-Investigator(Kenkyū-buntansha) 佐藤 秀明  久留米大学, 医学部, 准教授 (60271996)
Project Period (FY) 2019-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2021: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2020: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
KeywordsX線小角散乱 / 電子伝達複合体 / クライオ電子顕微鏡 / 電子移動 / 酸化還元酵素 / X線結晶構造解析 / 分子間相互作用
Outline of Research at the Start

シトクロムP450(P450)はステロイドの生合成等の脂質代謝や薬物代謝において、重要な役割を果たす酵素である。本研究では、P450の酵素反応に必要な還元力を供給するNADPH-シトクロムP450還元酵素(CPR)とP450の融合タンパク質であるP450BM-3に着目し、X線小角散乱およびX線結晶構造解析による立体構造決定を目指す。これまでに、明らかにしたCPRから還元力を受け取る別の酵素であるヘムオキシゲナーゼ(HO)とCPRの複合体の立体構造と比較することにより、CPRのダイナミックな構造変化を伴う電子移動機構を検証する。

Outline of Final Research Achievements

Cytochrome P450 is involved in lipid and xenobiotic metabolisms. In order to proceed enzymatic reaction of P450, electron transfer from NADPH-cytochrome P450 reductase (CPR) or other redox partner is indispensable. To elucidate electron transfer mechanism between them, we tried to prepare the complex of cytochrome P450 and CPR. However, the redox complex of P450 and CPR is unstable, thus we tried to determine the tertiary structure of P450BM-3 which is a natural fusion protein of P450 and CPR from bacteria.
Based on the small-angle X-ray scattering and multi-angle light scattering results, we concluded that P450BM-3 is a homo-dimer and CPR domain is involved in dimer formation. We also tried to determine the tertiary structure of P450BM-3 by cryo-electron microscopy although it was failed due to the uniformity of the particle orientation.

Academic Significance and Societal Importance of the Research Achievements

P450BM-3のP450ドメインはその酵素活性の高さから産業的応用が期待されている酵素である。これまでに部分構造は明らかとなっているが、全長構造が明らかとなれば、その応用はより発展することが期待される。また、CPRとP450はステロイドホルモンの合成に関与しており、その機能不全による遺伝病が知られている。CPRからP450への電子移動機構が明らかになることによって、その遺伝病の治療法解明に寄与することが期待される。本研究結果ではX線小角散乱測定による低分解能構造しか得られなかったが、今後の研究進展によって、原子分解能の構造が得られれば、上記の目的が達成されることが期待される。

Report

(4 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • Research Products

    (18 results)

All 2021 2020 2019 Other

All Journal Article (6 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Open Access: 5 results) Presentation (10 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Remarks (2 results)

  • [Journal Article] Crystal structures of hydroxymethylbilane synthase complexed with a substrate analog: a single substrate-binding site for four consecutive condensation steps2021

    • Author(s)
      Sato Hideaki、Sugishima Masakazu、Tsukaguchi Mai、Masuko Takahiro、Iijima Mikuru、Takano Mitsunori、Omata Yoshiaki、Hirabayashi Kei、Wada Kei、Hisaeda Yoshio、Yamamoto Ken
    • Journal Title

      Biochemical Journal

      Volume: 478 Issue: 5 Pages: 1023-1042

    • DOI

      10.1042/bcj20200996

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Conformational equilibrium of NADPH-cytochrome P450 oxidoreductase is essential for heme oxygenase reaction2020

    • Author(s)
      Sugishima M., Taira J., Sagara T., Nakao R., Sato H., Noguchi M., Fukuyama K., Yamamoto K., Yasunaga T., Sakamoto H.
    • Journal Title

      Antioxidants

      Volume: 9 Issue: 8 Pages: 1-13

    • DOI

      10.3390/antiox9080673

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Functional diversification of two bilin reductases for light perception and harvesting in unique cyanobacterium Acaryochloris marina MBIC 110172020

    • Author(s)
      Miyake Keita、Fushimi Keiji、Kashimoto Tomonori、Maeda Kaisei、Ni‐Ni‐Win、Kimura Hiroyuki、Sugishima Masakazu、Ikeuchi Masahiko、Narikawa Rei
    • Journal Title

      The FEBS Journal

      Volume: - Issue: 18 Pages: 4016-4031

    • DOI

      10.1111/febs.15230

    • Related Report
      2020 Research-status Report 2019 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Coupling of Redox and Structural States in Cytochrome P450 Reductase Studied by Molecular Dynamics Simulation2019

    • Author(s)
      Iijima Mikuru、Ohnuki Jun、Sato Takato、Sugishima Masakazu、Takano Mitsunori
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 9341-9341

    • DOI

      10.1038/s41598-019-45690-2

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal structure of phytochromobilin synthase in complex with biliverdin IXα, a key enzyme in the biosynthesis of phytochrome2019

    • Author(s)
      Sugishima Masakazu、Wada Kei、Fukuyama Keiichi、Yamamoto Ken
    • Journal Title

      Journal of Biological Chemistry

      Volume: 295 Issue: 3 Pages: 771-782

    • DOI

      10.1074/jbc.ra119.011431

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bilin-metabolizing Enzymes: Site-specific Reductions Catalyzed by Two Different Type of Enzymes2019

    • Author(s)
      Sugishima, M., Wada, K., Unno, M., Fukuyama, K.
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 59 Pages: 73-80

    • DOI

      10.1016/j.sbi.2019.03.005

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Presentation] Domain movements of NADPH-cytochrome P450 oxidoreductase (CPR) are required for the smooth electron transfer from CPR to heme-heme oxygenase-1 (HO-1) complex2021

    • Author(s)
      Masakazu Sugishima, Junichi Taira, Mikuru Iijima, Hideaki Sato, Kei Wada, Masato Noguchi, Keiichi Fukuyama, Mitsunori Takano, Hiroshi Sakamoto, Ken Yamamoto
    • Organizer
      25th Congress of the International Union of Crystallography
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural and functional analysis of tomato HY2 which synthesizes the chromophore for plant phytochrome2021

    • Author(s)
      Masakazu Sugishima, Kei Wada, Natsuki Saito, Masaki Unno, Keiichi Fukuyama, Ken Yamamoto
    • Organizer
      第21回日本蛋白質科学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Relationship between the protonation state of the substrate and the absorption spectrum in a mutant of the enzyme that synthesizes a photosynthetic pigment2021

    • Author(s)
      Masaki Unno, Keisuke Igarashi, Yoshinori Hagiwara, Masakazu Sugishima, Kei Wada, Keiichi Fukuyama, Atsushi Ikeda, Katsuhiro Kusaka, Naomine Yano, Tatsuya Joutsuka, Andreas Ostermann
    • Organizer
      MLZ Conference 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] フィトクロム発色団合成酵素HY2の結晶大型化に向けて2020

    • Author(s)
      杉島正一、和田 啓、齋藤夏希、海野昌喜、福山恵一、山本 健
    • Organizer
      日本結晶学会2020年度年会
    • Related Report
      2020 Research-status Report
  • [Presentation] 光応答タンパク質フィトクロムの発色団合成機構2020

    • Author(s)
      杉島正一、和田 啓、福山恵一、山本 健
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Research-status Report
  • [Presentation] フィトクロム発色団合成酵素のX線結晶構造解析2019

    • Author(s)
      杉島正一、和田 啓、山本 健
    • Organizer
      2019年度日本生化学会九州支部例会
    • Related Report
      2019 Research-status Report
  • [Presentation] フィトクロモビリン合成酵素の酵素反応と立体構造2019

    • Author(s)
      杉島正一、和田 啓、山本健
    • Organizer
      第43回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] 基質誘導体を結合したヒドロキシメチルビランシンターゼ反応中間体の構造解析2019

    • Author(s)
      佐藤秀明、杉島正一、塚口舞、増子隆博、小俣義明、和田啓、久枝良雄、山本健
    • Organizer
      第43回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] 赤色光受容体フィトクロムの光受容色素合成に必須な酵素の立体構造と機能2019

    • Author(s)
      杉島正一、和田啓、福山恵一、山本健
    • Organizer
      2019年度日本結晶学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] ヘム分解酵素HO-1によるCOとO2の厳密な識別機構2019

    • Author(s)
      杉島正一
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Remarks] ホームページ

    • URL

      https://sites.google.com/view/msugishima76

    • Related Report
      2021 Annual Research Report 2019 Research-status Report
  • [Remarks] 個人のホームページ

    • URL

      https://sites.google.com/view/msugishima76

    • Related Report
      2020 Research-status Report

URL: 

Published: 2019-04-18   Modified: 2023-01-30  

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