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Dissecting molecular mechanisms mediated by Polycomb group proteins in maintenance and differentiation of ES cells

Research Project

Project/Area Number 20390088
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field General medical chemistry
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

KOSEKI HARUHIKO  The Institute of Physical and Chemical Research, 免疫器官形成研究グループ, グループディレクター (40225446)

Co-Investigator(Renkei-kenkyūsha) TAKAHO Endoh  独立行政法人理化学研究所, 生命情報基盤研究部門, 研究員 (40384862)
MITSUHIRO Endoh  独立行政法人理化学研究所, 免疫器官形成研究グループ, 研究員 (40391883)
JUN Shinga  独立行政法人理化学研究所, 免疫器官形成研究グループ, 研究員 (20334211)
FUJIMURA Yu-Ichi  独立行政法人理化学研究所, 免疫器官形成研究グループ, 研究員 (60392099)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥19,630,000 (Direct Cost: ¥15,100,000、Indirect Cost: ¥4,530,000)
Fiscal Year 2010: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2009: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Fiscal Year 2008: ¥7,280,000 (Direct Cost: ¥5,600,000、Indirect Cost: ¥1,680,000)
Keywordsポリコーム群 / ES細胞 / 転写制御 / CpGアイランド / マウス / PRC1 / PRC2 / ヒストン / Oct3 / 4 / ユビキチン
Research Abstract

Two distinct Polycomb complexes, PRC1 and PRC2, collaborate to maintain epigenetic repression of key developmental loci in embryonic stem cells (ESCs). Although the respective complexes catalyze mono-ubiquitination of histone H2A (H2Aub1) and trimethylation of H3 lysine 27 (H3K27me3), the extent which these modifications contribute to Polycomb repression remains controversial. To address this issue, we characterized PRC1 mutants that either lack the ability to catalyze H2Aub1 or ineffectively bind H3K27me3. We find that the catalytically-inactive PRC1 mutant maintains the ability to compact chromatin at the Hox loci, but is nonetheless essential to facilitate repression of target genes and to maintain ESCs in an undifferentiated state. We further show that PRC1 localization and H2Aub1 deposition at most but not all target loci depends on physical recognition of H3K27me3 by CBX2, a core PRC1 subunit. Our data suggest that heterogeneous mechanisms, including chromatin compaction and ubiquitination, as well as PRC2-dependent and PRC2-independent recruitment modes underlie PRC1 function. Such diverse sensing mechanisms and effectors might be required for appropriate loading of PRC1 onto heterogeneous target loci, and/or to maintain a repressive state that is robust yet highly responsive to developmental cues during ES cell self-renewal and differentiation.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (58 results)

All 2011 2010 2009 2008

All Journal Article (40 results) (of which Peer Reviewed: 40 results) Presentation (16 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Journal Article] Mammalian Polycomblike Pcl2/Mtf2 is a novel regulatory component of PRC2 that can differentially modulate Polycomb activity at both the Hox gene cluster and at Cdkn2a genes2011

    • Author(s)
      Li X, Isono KI, Yamada D, Endo TA, Endoh M, Shinga J, Mizutani-Koseki Y, Otte AP, Casanova M, Kitamura H, Kamijo T, Sharif J, Ohara O, Toyada T, Bernstein BE, Brockdorff N, Koseki H
    • Journal Title

      Mol Cell Biol.

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Irxl1 mutant mice show reduced tendon differentiation and no patterning defects in musculoskeletal system development.2011

    • Author(s)
      Kimura W
    • Journal Title

      Genesis

      Volume: 49 Pages: 2-9

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mammalian Polycomblike Pcl2/Mtf2 is a novel regulatory component of PRC2 that can differentially modulate Polycomb activity at both the Hox gene cluster and at Cdkn2a genes.2011

    • Author(s)
      Li X
    • Journal Title

      Mol Cell Biol

      Volume: 31 Pages: 351-364

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ESCs require PRC2 to direct the successful reprogramming of differentiated cells toward pluripotency2010

    • Author(s)
      Pereira CF, Piccolo FM, Tsubouchi T, Sauer S, Ryan NK, Bruno L, Landeira D, Santos J, Banito A, Gil J, Koseki H, Merkenschlager M, Fisher AG
    • Journal Title

      Cell Stem Cell. 6

      Pages: 547-556

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel zinc finger protein Zfp277 mediates transcriptional repression of the Ink4a/arf locus through polycomb repressive complex 1.2010

    • Author(s)
      Negishi M
    • Journal Title

      PLoS One

      Volume: 5

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Selective ablation of basophils in mice reveals their nonredundant role in acquired immunity against ticks.2010

    • Author(s)
      Wada T
    • Journal Title

      J Clin Invest.

      Volume: 120 Pages: 2867-2875

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spermatogenic Disruptions at Three Meiotic Stages in Hybrid Males Between House Mouse Subspecies or Species.2010

    • Author(s)
      Oka A
    • Journal Title

      Genetics

      Volume: 186 Pages: 339-351

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ESCs require PRC2 to direct the successful reprogramming of differentiated cells toward pluripotency2010

    • Author(s)
      Pereira CF
    • Journal Title

      Cell Stem Cell.

      Volume: 6 Pages: 547-556

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Murine induced pluripotent stem cells can be derived from and differentiate into natural killer T cells.2010

    • Author(s)
      Watarai H
    • Journal Title

      J Clin Invest.

      Volume: 120 Pages: 2610-2618

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polycomb group molecule PHC3 regulates polycomb complex composition and prognosis of osteosarcoma.2010

    • Author(s)
      Iwata S
    • Journal Title

      Cancer Sci.

      Volume: 101 Pages: 1646-1652

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells.2010

    • Author(s)
      Majewski IJ
    • Journal Title

      Blood.

      Volume: 116 Pages: 731-739

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polycomb group gene product Ring1B regulates Th2-driven airway inflammation through the inhibition of Bim-mediated apoptosis of effector Th2 cells in the lung.2010

    • Author(s)
      Suzuki A
    • Journal Title

      J Immunol.

      Volume: 184 Pages: 4510-4520

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Bmi1 is a MYCN target gene that regulates tumorigenesis through repression of KIF1Bbeta and TSLC1 in neuroblastoma.2010

    • Author(s)
      Ochiai H
    • Journal Title

      Oncogene

      Volume: 29 Pages: 2681-2690

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A unique expression pattern of Tbx10 in the hindbrain as revealed by Tbx10(lacZ) allele.2010

    • Author(s)
      Xue X
    • Journal Title

      Genesis

      Volume: 48 Pages: 295-302

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CCN3 Inhibits Neointimal Hyperplasia Through Modulation of Smooth Muscle Cell Growth and Migration.2010

    • Author(s)
      Shimoyama T
    • Journal Title

      Arterioscler Thromb Vasc Biol.

      Volume: 30 Pages: 675-682

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CCN3 Inhibits Neointimal Hyperplasia Through Modulation of Smooth Muscle Cell Growth and Migration2010

    • Author(s)
      Shimoyama T
    • Journal Title

      Arterioscler Thromb Vase Biol. (In press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A unique expression pattern of Tbx10 in the hindbrain as revealed by Tbx10(lacZ)allele2010

    • Author(s)
      Xue X
    • Journal Title

      Blood. (In press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Bmi1 is a MYCN target gene that regulates tumorigenesis through repression of KIF1Bbeta and TSLC1 in neuroblastoma2010

    • Author(s)
      Ochiai H
    • Journal Title

      Oncogene (In press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] all4 is essential for stabilization, but not for pluripotency, of embryonic stem cells by repressing aberrant trophectoderm gene expression2009

    • Author(s)
      Yuri S
    • Journal Title

      Stem Cells. 27

      Pages: 796-805

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MAPKAP kinase MK2 maintains self-renewal capacity of haematopoietic stem cells2009

    • Author(s)
      Schwermann J
    • Journal Title

      EMBO J. 28

      Pages: 1392-406

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Induction of Wnt5a-expressing mesenchymal cells adjacent to the cloacal plate is an essential process for its proximodistal elongation and subsequent anorectal development2009

    • Author(s)
      Nakata M
    • Journal Title

      Pediatr Res. 66

      Pages: 149-54

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of loss-of-function mutations of SLC35D1 in patients with Schneckenbecken dysplasia, but not with other severe spondylodysplastic dysplasias group diseases2009

    • Author(s)
      Furuichi T
    • Journal Title

      J Med Genet. 46

      Pages: 562-8

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Maintenance of undifferentiated state and self-renewal of embryonic neural stem cells by Polycomb protein Ring1B2009

    • Author(s)
      Roman-Trufero M
    • Journal Title

      Stem Cells. 27

      Pages: 1559-70

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel gene essential for the development of single positive thymocytes2009

    • Author(s)
      Kakugawa K
    • Journal Title

      Mol Cell Biol. 29

      Pages: 5128-35

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] CRTAM confers late-stage activation of CD8+ T cells to regulate retention within lymph node2009

    • Author(s)
      Takeuchi A
    • Journal Title

      J Immunol. 183

      Pages: 4220-8

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polycomb limits the neurogenic competence of neural precursor cells to promote astrogenic fate transition2009

    • Author(s)
      Hirabayashi Y
    • Journal Title

      Neuron 63

      Pages: 600-13

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enhanced Th2 cell differentiation and allergen-induced airway inflammation in Zfp35-deficient mice2009

    • Author(s)
      Kitajima M
    • Journal Title

      J Immunol. 183

      Pages: 5388-96

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Generation of functional NKT cells in vitro from embryonic stem cells bearing rearranged invariant Valpha14-Jalpha18 TCRalpha gene2009

    • Author(s)
      Watarai H
    • Journal Title

      Blood. 115

      Pages: 230-7

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains2008

    • Author(s)
      Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, Adli M, Kasif S, Ptaszek LM, Cowan CA, Lander ES, Koseki H, Bernstein BE
    • Journal Title

      PLoS Genet. 4

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity2008

    • Author(s)
      Endoh M., Endo T.A., Endoh T., Fujimura Y., Ohara O., Toyoda T., Otte A.P., Okano M., Brockdorff N., Vidal M., Koseki H.
    • Journal Title

      Development 135

      Pages: 1513-1524

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Altered quality control in the endoplasmic reticulum causes cortical dysplasia in knock-in mice expressing a mutant BiP2008

    • Author(s)
      Mimura N
    • Journal Title

      Mol Cell Biol. 28

      Pages: 293-301

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inactivation of the polycomb group protein Ring1B unveils an antiproliferative role in hematopoietic cell expansion and cooperation with tumorigenesis associated with Ink4a deletion2008

    • Author(s)
      Cales C
    • Journal Title

      Mol Cell Biol. 28

      Pages: 1018-28

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PRC1 and Suv39h specify parental asymmetry at constitutive heterochromatin in early mouse embryos2008

    • Author(s)
      Puschendorf M
    • Journal Title

      Nat Genet 40

      Pages: 411-20

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity2008

    • Author(s)
      Endoh M
    • Journal Title

      Development 135

      Pages: 1513-24

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A polycomb group protein, PHF1, is involved in the response to DNA double-strand breaks in human cell2008

    • Author(s)
      Hong Z
    • Journal Title

      Nucleic Acids Res 36

      Pages: 2939-2947

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A lysosomal protein negatively regulates surface T cell antigen receptor expression by promoting CD3zeta-chain degradation2008

    • Author(s)
      Ouchida R
    • Journal Title

      Immunity 29

      Pages: 33-43

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Repressor of GATA regulates T(H)2-driven allergic airway inflammation and airway hyperresponsiveness2008

    • Author(s)
      Hirahara K
    • Journal Title

      J Allergy Clin Immunol 122

      Pages: 512-20

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The zinc transporter SLC39A13/ZIP13 is required for connective tissue development ; its involvement in BMP/TGF-beta signaling pathways2008

    • Author(s)
      Fukada T
    • Journal Title

      PLoS ONE 3

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains2008

    • Author(s)
      Ku M
    • Journal Title

      PLoS Genet. 4

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear Inhibitor of Protein Phosphatase-1 (NIPP1) Directs Protein Phosphatase-1 (PP1) to Dephosphorylate the U2 Small Nuclear Ribonucleoprotein Particle (snRNP) Component, Spliceosome-associated Protein 155 (Sap155)2008

    • Author(s)
      Tanuma N
    • Journal Title

      J Biol Chem 19

      Pages: 35805-35814

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Polycomb-dependent regulation for differentiation programs of stem cells and progenitors2010

    • Author(s)
      Koseki H
    • Organizer
      第16回国際分化学会国際会議
    • Place of Presentation
      奈良、日本
    • Year and Date
      2010-11-16
    • Related Report
      2010 Final Research Report
  • [Presentation] Polycomb-dependent regulation for differentiation programs of stem cells and progenitors2010

    • Author(s)
      Koseki H
    • Organizer
      第16回国際分化学会国際会議
    • Place of Presentation
      日本、奈良市
    • Year and Date
      2010-11-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] The role of Polycomb body to mediate Hox repression2010

    • Author(s)
      Koseki H
    • Organizer
      東京大学分子細胞生物学研究所 核内情報研究分野 シンポジウム
    • Place of Presentation
      東京、日本
    • Year and Date
      2010-11-02
    • Related Report
      2010 Final Research Report
  • [Presentation] The role of Polycomb body to mediate Hox repression2010

    • Author(s)
      Koseki H
    • Organizer
      東京大学分子細胞生物学研究所 核内情報研究分野
    • Place of Presentation
      日本、東京都(シンポジウム)
    • Year and Date
      2010-11-02
    • Related Report
      2010 Annual Research Report
  • [Presentation] プロモーターアレイを用いたポリコーム群によるES細胞維持メカニズムの解析2010

    • Author(s)
      Koseki H
    • Organizer
      日本エピジェネティクス研究会第4回年会
    • Place of Presentation
      米子,日本
    • Year and Date
      2010-05-22
    • Related Report
      2010 Final Research Report
  • [Presentation] プロモーターアレイを用いたポリコーム群によるES細胞維持メカニズムの解析2010

    • Author(s)
      Koseki H
    • Organizer
      日本エピジェネティクス研究会第4回年会
    • Place of Presentation
      日本、米子市
    • Year and Date
      2010-05-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] 遺伝現象におけるエピジェネティック制御とリプログラミング2010

    • Author(s)
      Koseki H
    • Organizer
      第62回日本細胞生物学会大会
    • Place of Presentation
      大阪,日本
    • Year and Date
      2010-05-19
    • Related Report
      2010 Final Research Report
  • [Presentation] 遺伝現象におけるエピジェネティック制御とリプログラミング2010

    • Author(s)
      Koseki H
    • Organizer
      第62回日本細胞生物学会大会
    • Place of Presentation
      日本、大阪市
    • Year and Date
      2010-05-19
    • Related Report
      2010 Annual Research Report
  • [Presentation] HP1g links histone H3K9 methylation to homologus chromosome pairing during melotic prophase2009

    • Author(s)
      Koseki H
    • Organizer
      he Epigenetics 2009 Australian Scientific Conference@Epigenetics and Development
    • Place of Presentation
      Brisbane, Australia
    • Year and Date
      2009-12-02
    • Related Report
      2010 Final Research Report
  • [Presentation] HP1g links histone H3K9 methylation to homologus chromosome pairing during melotic prophase2009

    • Author(s)
      Koseki H
    • Organizer
      The Epigenetics 2009 Australian Scientific Conference@Epigenetics and Development
    • Place of Presentation
      ブリスベン、豪州
    • Year and Date
      2009-12-02
    • Related Report
      2009 Annual Research Report
  • [Presentation] ES細胞におけるポリコーム群の動き2009

    • Author(s)
      Koseki H
    • Organizer
      第42回日本発生生物学会年会
    • Place of Presentation
      京都、日本
    • Year and Date
      2009-05-29
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] Histone H2A ubiquitinylation subdivides bivalent genes into PRC1-dependent and -independent domains in ES cells2008

    • Author(s)
      Koseki H
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会、合同大会
    • Place of Presentation
      神戸,日本
    • Year and Date
      2008-12-09
    • Related Report
      2010 Final Research Report
  • [Presentation] Polycom repression mediates pluripotency of ES cells2008

    • Author(s)
      Koseki H
    • Organizer
      Cold Spring Harbor Laboratory
    • Place of Presentation
      New York, U.S.A.
    • Year and Date
      2008-10-31
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Presentation] Mouse development : embryogenesis2008

    • Author(s)
      Koseki H
    • Organizer
      EMBO Practical Course on Anatomy and Embryology of the Mouse
    • Place of Presentation
      Zagreb, Croatia
    • Year and Date
      2008-09-06
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Presentation] Polycomb group proteins Ring1A/B are functionally linked to the coretranscriptional regulatory circuitry to maintain ES cell identity2008

    • Author(s)
      Koseki H
    • Organizer
      Shanghai Cancer Institute
    • Place of Presentation
      Shanghai, China
    • Year and Date
      2008-07-03
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Presentation] Histone H2A ubiquitinylation subdivides bivalent genes into PRC1-dependent and-independent domains in ES cells2008

    • Author(s)
      Koseki H
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会、合同大会
    • Place of Presentation
      神戸,日本
    • Related Report
      2008 Annual Research Report
  • [Patent(Industrial Property Rights)] ES細胞の製造方法2011

    • Inventor(s)
      古関明彦
    • Industrial Property Rights Holder
      独立行政法人理化学研究所
    • Filing Date
      2011-04-01
    • Related Report
      2010 Final Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 変異体FGF2008

    • Inventor(s)
      古関明彦
    • Industrial Property Rights Holder
      国立大学法人千葉大学、独立行政法人理化学研究所
    • Industrial Property Number
      2008-081826
    • Filing Date
      2008-03-26
    • Related Report
      2010 Final Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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