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Development of a novel genome editing method through transient arrest control of the tumor suppressor protein p53

Research Project

Project/Area Number 20H02873
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 37030:Chemical biology-related
Research InstitutionHokkaido University

Principal Investigator

Sakaguchi Kazuyasu  北海道大学, 理学研究院, 教授 (00315053)

Co-Investigator(Kenkyū-buntansha) 鎌田 瑠泉  北海道大学, 理学研究院, 准教授 (40750881)
中川 夏美  北海道大学, 理学研究院, 助教 (30881528)
Project Period (FY) 2020-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2022: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2021: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2020: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Keywords癌抑制タンパク質p53 / 多量体形成 / ゲノム編集 / ペプチド / 一過的阻害
Outline of Research at the Start

癌抑制タンパク質p53は、細胞癌化抑制のための主要因子であるが、一方でゲノムの編集などにおいてはその機能が大きな障害となる。本研究では、癌抑制タンパク質p53機能の時間的制御による新規ゲノム編集法の開発を目指す。まず、p53の機能発現に必須な四量体形成を介して、一過的にp53活性を停止させる手法の開発する。さらに、この手法を用いて、効率的なゲノム編集後にp53活性を回復させることにより、安全なゲノム編集法の開発研究を実施する。

Outline of Final Research Achievements

Genome editing has attracted significant attention as a next-generation gene therapy method. However, CRISPR/Cas9 also preferentially edits genomes of cells with dysfunctional cancer suppressor protein p53, and therefore, the development of safer and more efficient genome editing methods is required. In this study, we investigated the structural stability of p53 tetramer formation and examined the conditions for various parameters. As a result, we succeeded in significantly enhancing genome editing efficiency by transiently inhibiting p53 function through the addition of p53 tetramer formation domain peptide analogues to target cells.

Academic Significance and Societal Importance of the Research Achievements

次世代の遺伝子治療法として注目されるゲノム編集においては、高い編集効率ばかりでなく編集後の細胞癌化に対する安全性が非常に重要である。従来の方法では、編集後に細胞が癌化するリスクが懸念されていた。本研究の成果により、安全かつ高効率なゲノム編集法の改良に対しての新たな指針が示された。

Report

(4 results)
  • 2023 Final Research Report ( PDF )
  • 2022 Annual Research Report
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • Research Products

    (46 results)

All 2023 2022 2021 2020 Other

All Int'l Joint Research (2 results) Journal Article (8 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 8 results,  Open Access: 4 results) Presentation (36 results) (of which Int'l Joint Research: 8 results,  Invited: 9 results)

  • [Int'l Joint Research] University of Montreal(カナダ)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] De La Salle University(フィリピン)

    • Related Report
      2022 Annual Research Report
  • [Journal Article] Development of a fluorescence reporter system to quantify transcriptional activity of endogenous p53 in living cells2023

    • Author(s)
      Tsuruoka Tatsuki、Nakayama Emiri、Endo Takuya、Harashima Shingo、Kamada Rui、Sakaguchi Kazuyasu、Imagawa Toshiaki
    • Journal Title

      Journal of Cell Science

      Volume: 136 Issue: 12 Pages: 1-14

    • DOI

      10.1242/jcs.260918

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties2023

    • Author(s)
      Sakaguchi Shuya、Nakagawa Natsumi、Wahba Haytham M.、Wada Junya、Kamada Rui、Omichinski James G.、Sakaguchi Kazuyasu
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 24 Issue: 23 Pages: 16620-16620

    • DOI

      10.3390/ijms242316620

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Stereoselective Interaction of Helix-Hairpin-Helix Motif Peptides with DNA Structure2022

    • Author(s)
      Kamada Rui、Sakaguchi Shuya、Kura Shoma、Takamatsu Kaori、Yamamoto Tetsuya、Imagawa Toshiaki、Sakaguchi Kazuyasu
    • Journal Title

      Chemistry Letters

      Volume: 51 Issue: 10 Pages: 1029-1032

    • DOI

      10.1246/cl.220340

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of active site arginine residues in substrate recognition by PPM1A2021

    • Author(s)
      Itsumi Tani, Shogo Ito, Yukiko Shirahata, Yutaka Matsuyama, James G Omichinski, Yasuyuki Shimohigashi, Rui Kamada, Kazuyasu Sakaguchi
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 581 Pages: 1-5

    • DOI

      10.1016/j.bbrc.2021.10.001

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] PPM1D Is a Therapeutic Target in Childhood Neural Tumors2021

    • Author(s)
      Jelena Milosevic, Diana Treis, Susanne Fransson, Gabriel Gallo-Oller, Baldur Sveinbjornsson B, Nina Eissler, Keiji Tanino, Kazuyasu Sakaguchi, Tommy Martinsson, Malin Wickstrom, Per Kogner, John Inge Johnsen
    • Journal Title

      Cancers

      Volume: 13 Issue: 23 Pages: 6042-6062

    • DOI

      10.3390/cancers13236042

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Metal-dependent Ser/Thr protein phosphatase PPM family: evolution, structures, diseases and inhibitors2020

    • Author(s)
      Rui Kamada, Fuki Kudoh, Shogo Ito, Itsumi Tani, Jose Isagani B. Janairo, James G. Omichinski, Kazuyasu Sakaguchi
    • Journal Title

      Pharmacology & Therapeutics

      Volume: 215 Pages: 107622-107622

    • DOI

      10.1016/j.pharmthera.2020.107622

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Characterization of a C-Terminal SUMO-Interacting Motif Present in Select PIAS-Family Proteins2020

    • Author(s)
      Mathieu Lussier-Price,Xavier H. Mascle, Laurent Cappadocia L, Rui Kamada R, Kazuyasu Sakaguchi K, Haytham M. Wahba, James G. Omichinski
    • Journal Title

      Structure

      Volume: 28 Issue: 5 Pages: 573-585.e5

    • DOI

      10.1016/j.str.2020.04.002

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner2020

    • Author(s)
      Xavier H. Mascle,Christina Gagnon, Haytham M. Wahba, Mathieu Lussier-Price, Laurent Cappadocia, Kazuyasu Sakaguchi K, James G. Omichinski
    • Journal Title

      Structure

      Volume: 28 Issue: 2 Pages: 157-168.e5

    • DOI

      10.1016/j.str.2019.11.019

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Coiled-coilペプチドの大腸菌増殖に対する増殖効果2023

    • Author(s)
      上野康大、布川優奈、立井龍太郎、中川夏美、鎌田瑠泉、坂口和靖
    • Organizer
      第60回日本生化学会北海道支部例会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Interaction of Protein/Peptide and other biomolecules from the chemical point of view2023

    • Author(s)
      Kazuyasu Sakaguchi
    • Organizer
      Biological Chemistry Symposium 2023
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Functional regulation of peptides and proteins via oligomerization2023

    • Author(s)
      Natsumi Nakagawa
    • Organizer
      Biological Chemistry Symposium 2023
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] The gain of p53-specific function by loss of hetero-oligomer formation2023

    • Author(s)
      Shuya Sakaguchi, Natsumi Nakagawa, Junya Wada, Fumihito Kitagawa, Takao Nomura, Rui Kamada, James G. Omichinski, Kazuyasu Sakaguchi
    • Organizer
      Biological Chemistry Symposium 2023
    • Related Report
      2022 Annual Research Report
  • [Presentation] Development of an efficient genome editing method by transient p53 suppression via p53TD peptide2023

    • Author(s)
      Kodai Ueno, Yuna Nunokawa, Daiki Kurosu, Natsumi Nakagawa, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      Biological Chemistry Symposium 2023
    • Related Report
      2022 Annual Research Report
  • [Presentation] coiled-coilペプチドによる大腸菌の定常期における増殖促進2023

    • Author(s)
      中川夏美、立井龍太郎、上野康大、布川優奈、坂口周弥、鎌田瑠泉、坂口和靖
    • Organizer
      第9回北海道大学部局横断シンポジウム
    • Related Report
      2022 Annual Research Report
  • [Presentation] GROWTH OF E. COLI IN STATIONARY PHASE ENHANCED BY COILED-COIL PEPTIDES2023

    • Author(s)
      Natsumi Nakagawa, Ryutaro Tatei, Kodai Ueno, Yuna Nunokawa, Shuya Sakaguchi, Rui Kamada, and Kazuyasu Sakaguchi
    • Organizer
      第60回ペプチド討論会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Argメチル化カスケードによる癌抑制タンパク質p53四量体構造の安定性制御2022

    • Author(s)
      中川夏美、坂口周弥、和田隼弥、鎌田瑠泉、坂口和靖
    • Organizer
      日本化学会北海道支部2022年夏季研究発表会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Structural and functional evolution of tetramerization in tumor suppressor protein p53 family2022

    • Author(s)
      Shuya Sakaguchi, Rui Kamada, and Kazuyasu Sakaguchi
    • Organizer
      36th European Peptide Symposium (EPS) & 12th International Peptide Symposium (IPS) (国際学会)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] PRMT5によるアルギニンメチル化カスケードを介したp53四量体形成制御機構2022

    • Author(s)
      中川夏美、坂口周弥、和田隼弥、鎌田瑠泉、坂口和靖
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] がんおよび免疫制御関連タンパク質の構造と機能に関する化学的研究2022

    • Author(s)
      鎌田瑠泉
    • Organizer
      日本化学会第102春季年会(2022)
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Interaction of Arginine Residues with phosphate group in the Active Site of Ser/Thr Phosphatase PPM1A2021

    • Author(s)
      Shogo Ito, Itsumi Tani, Yukiko Shirahata, Yasuyuki Shimohigashi, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      35th Anniversary Symposium of The Protein Society
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effect of Phosphorylation of Nucleolar Protein Nucleophosmin on Nucleolar Formation2021

    • Author(s)
      Itsumi Tani, Shogo Ito, Yui Oikawa, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      35th Anniversary Symposium of The Protein Society
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Alterations in the stability and hetero-oligomerization of the p53 family in vertebrates2021

    • Author(s)
      Shuya Sakaguchi, Natsumi Nakagawa, Haytham Wahba, Rui Kamada, James G. Omichinski, Kazuyasu Sakaguchi
    • Organizer
      35th Anniversary Symposium of The Protein Society
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 核小体タンパク質Nucleophosminのリン酸化による核小体形成制御機構の解明2021

    • Author(s)
      谷愛海、伊藤祥吾、及川ゆい、鎌田瑠泉、坂口和靖
    • Organizer
      第58回日本生化学会北海道支部例会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 脊椎動物における癌抑制タンパク質p53とp53ファミリーの四量体構造の進化2021

    • Author(s)
      坂口周弥、中川夏美、鎌田瑠泉、James G. Omichinski、坂口和靖
    • Organizer
      第58回日本生化学会北海道支部例会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 細胞分化におけるSer/ThrホスファターゼPPM1Dの新規機能の解明2021

    • Author(s)
      鎌田瑠泉
    • Organizer
      生体機能関連化学部会 若手の会第32回サマースクール
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] コイルドコイルを介したペプチドの多量体化による生理活性増強効果2021

    • Author(s)
      布川優奈、坂口周弥、碓井拓哉、鎌田瑠泉、坂口和靖
    • Organizer
      日本化学会北海道支部2021年夏季研究発表会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 好中球セブセットの分極化におけるSer/Thrホスファターゼ PPM1Dの機能解明2021

    • Author(s)
      鎌田瑠泉
    • Organizer
      第7回北海道大学部局横断シンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Anti-antibiotic activity of r-Pep2 derived from putative ORF sequence in E.coli rRNA2021

    • Author(s)
      Yuma Omata, Junya Imaizumi, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      第58回ペプチド討論会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Prmt5 methylates tumor suppressor protein p53 to regulate the stability of tetramer2021

    • Author(s)
      Natsumi Nakagawa, Shuya Sakaguchi, Junya Wada, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      第58回ペプチド討論会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Analysis of oligomerized bioactive peptides for eukaryotic and prokaryotic cells2021

    • Author(s)
      Yuna Nunokawa, Shuya Sakaguchi, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      第58回ペプチド討論会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Ser/Thr ホスファターゼPPM1D による好中球サブタイプの多様性制御2021

    • Author(s)
      鎌田瑠泉
    • Organizer
      第94回日本生化学会大会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] p53ファミリーの四量体構造とヘテロ多量体の脊椎動物における進化2021

    • Author(s)
      坂口周弥、中川夏美、鎌田瑠泉、James G. Omichinski、坂口和靖
    • Organizer
      化学系学協会北海道支部2021年冬季研究発表会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 生細胞蛍光プローブTriazapentalene誘導体を用いた生細胞の刺激応答解析2021

    • Author(s)
      崎谷愛未、鎌田瑠泉、池内和忠、谷野圭持、坂口和靖
    • Organizer
      化学系学協会北海道支部2021年冬季研究発表会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Anti-Antibiotic Peptide Derived from Putative ORF in E.coli rRNA2021

    • Author(s)
      Kazuyasu Sakaguchi
    • Organizer
      18th Akabori Conference
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Changes in the structure and function of the vertebrate p53 family proteins in evolution process2020

    • Author(s)
      Shuya Sakaguchi, Natsumi Nakagawa, Haytham Wahba, Rui Kamada, James G. Omichinski, Kazuyasu Sakaguchi
    • Organizer
      第20回日本蛋白質科学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] p53ファミリー四量体形成ドメインの脊椎動物の進化における安定化機構2020

    • Author(s)
      坂口周弥、中川夏美、鎌田瑠泉、James G. Omichinski、坂口和靖
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 好中球分化・多様化におけるp53誘導性ホスファターゼPPM1Dの機能解明2020

    • Author(s)
      鎌田瑠泉
    • Organizer
      第6回北海道大学部局横断シンポジウム
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Triazapentalene誘導体による生細胞の状態識別2020

    • Author(s)
      崎谷愛未、鎌田瑠泉、池内和忠、谷野圭持、坂口和靖
    • Organizer
      第6回北海道大学部局横断シンポジウム
    • Related Report
      2020 Annual Research Report
  • [Presentation] Control of nucleolar formation via nucleolar protein nucleophosmin by PPM1D phosphatase2020

    • Author(s)
      Itsumi Tani, Yui Oikawa, Shogo Ito, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      第57回ペプチド討論会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Changes in structure and stability of p53 family tetramerization domain in vertebrate evolution2020

    • Author(s)
      Shuya Sakaguchi, Natsumi Nakagawa, Rui Kamada, James G. Omichinski, Kazuyasu Sakaguchi
    • Organizer
      第57回ペプチド討論会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Effects of oligomerization through coiled-coil on biological activities2020

    • Author(s)
      Yuna Nunokawa, Shuya Sakaguchi, Tatsuya Sakaguchi, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      第57回ペプチド討論会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Ser/Thr phosphatase PPM1D regulates neutrophil differentiation and heterogeneity2020

    • Author(s)
      Rui Kamada,Fuki Kudoh, Shuji Shigenobu, Kazuyasu Sakaguchi
    • Organizer
      14th International Conference on Protein Phosphatases
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Control of nucleolar formation via phosphorylation of nucleolar protein nucleophosmin2020

    • Author(s)
      Itsumi Tani, Shogo Ito, Yui Oikawa, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      14th International Conference on Protein Phosphatases
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Functions of Ser/Thr phosphatase PPM1D on Adipocyte Differentiation2020

    • Author(s)
      Sae Uno, Toshiki Tsukamoto, Nozomi Kimura, Rui Kamada, Kazuyasu Sakaguchi
    • Organizer
      14th International Conference on Protein Phosphatases
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research

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Published: 2020-04-28   Modified: 2025-01-30  

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