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Regulatory mechanism of biological phase separation

Research Project

Project/Area Number 20H03199
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 43020:Structural biochemistry-related
Research InstitutionNara Medical University

Principal Investigator

Mori Eiichiro  奈良県立医科大学, 医学部, 准教授 (70803659)

Co-Investigator(Kenkyū-buntansha) 吉澤 拓也  立命館大学, 生命科学部, 講師 (50779056)
齋尾 智英  徳島大学, 先端酵素学研究所, 教授 (80740802)
菊池 壮太郎  奈良県立医科大学, 医学部, 助教 (90866386)
Project Period (FY) 2020-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2022: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2021: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2020: ¥9,490,000 (Direct Cost: ¥7,300,000、Indirect Cost: ¥2,190,000)
KeywordsLCドメイン / cross-βポリマー / 生物学的相分離 / アミロイド様線維 / 相分離シャペロン / 相分離駆動 / 相分離制御 / 相分離破綻 / 相分離生物学 / 天然変性タンパク質 / 中間径フィラメント / アミロイド線維 / 液-液相分離 / LLPS / 低複雑性配列 / cross-β polymer
Outline of Research at the Start

2010年代に入り、生物学的な相分離という「状態」から天然変性蛋白質の役割を説明する動きが出てきている。細胞内では、蛋白質の溶解性や凝集性を制御することで細胞内を区画化し、さまざまな生物学的な機能を制御しているという相分離生物学的なモデルが提唱されるようになってきた。また、生物学的相分離の破綻により、神経変性疾患やがん等の疾患を引き起こすことも徐々に明らかになってきた。本研究課題では、細胞内での蛋白質の状態を、構造・動態の解析技術を集約することで、生物学的相分離における蛋白質の制御機構を理解することを目指す。

Outline of Final Research Achievements

In this project, we aimed to understand the regulatory mechanism of biological phase separation. By using molecular chaperones to control phase separation (phase modifiers) and toxic phase disrupting peptides (phase disruptors) as model molecules, we investigated relations between regulation and disruption of biological phase separation. We proposed “disruption of phase modifiers model” [Nanaura et al. Nat Commun 2021] and cytoskeletons as potential molecular targets of phase disruption in pathogenesis [Shiota et al. Front Cell Dev Biol 2022]. Further, we analyzed detailed mechanisms of “disruption of phase modifiers” and related mechanisms in autophagy in pathogenesis [manuscript in preparation].

Academic Significance and Societal Importance of the Research Achievements

本研究課題を通じて、相分離の制御機構の理解を深めることができ、ALSなどの相分離破綻が病因と考えられている疾患群の発症機序の解明につながった。研究課題進行中に明らかになった更なる詳細な機序の可能性や、オートファジーなどとの関連性など、今後さらなる研究の推進が期待される。こうした成果は、治療法の無い神経難病に対する病態理解を深め、将来的な治療薬開発へとつながることが期待される。

Report

(4 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • Research Products

    (45 results)

All 2023 2022 2021 2020 Other

All Int'l Joint Research (2 results) Journal Article (15 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 15 results,  Open Access: 15 results) Presentation (26 results) (of which Int'l Joint Research: 1 results,  Invited: 16 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] UT Southwestern Medical Center/Houston University/University of California San Diego(米国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] University of Luxembourg(ルクセンブルク)

    • Related Report
      2020 Annual Research Report
  • [Journal Article] C9orf72-Derived Proline:Arginine Poly-Dipeptides Modulate Cytoskeleton and Mechanical Stress Response2022

    • Author(s)
      Shiota Tomo、Nagata Riko、Kikuchi Sotaro、Nanaura Hitoki、Matsubayashi Masaya、Nakanishi Mari、Kobashigawa Shinko、Isozumi Noriyoshi、Kiriyama Takao、Nagayama Kazuaki、Sugie Kazuma、Yamashiro Yoshito、Mori Eiichiro
    • Journal Title

      Frontiers in Cell and Developmental Biology

      Volume: 10 Pages: 750829-750829

    • DOI

      10.3389/fcell.2022.750829

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] C9orf72-derived arginine-rich poly-dipeptides impede phase modifiers2021

    • Author(s)
      Nanaura Hitoki、Aiba Yuichiro、Nakanishi Mari、Shiota Tomo、Hibino Masaki、Kikuchi Sotaro、Nagata Riko、Morikawa Naritaka、Iguchi Naohiko、Kiriyama Takao、Nagamori Shushi、Sugie Kazuma、Saio Tomohide、Yoshizawa Takuya、Mori Eiichiro et al.
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 5301-5301

    • DOI

      10.1038/s41467-021-25560-0

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Gene expression profiles of human cerebral organoids identify PPAR pathway and PKM2 as key markers for oxygen-glucose deprivation and reoxygenation2021

    • Author(s)
      Naoki Iwasa, Takeshi K. Matsui, Naohiko Iguchi, Kaoru Kinugawa, Naritaka Morikawa, Yoshihiko M. Sakaguchi, Tomo Shiota, Shinko Kobashigawa et. al.
    • Journal Title

      Frontiers in Cellular Neuroscience

      Volume: - Pages: 605030-605030

    • DOI

      10.3389/fncel.2021.605030

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Ras-like Gem GTPase induced by Npas4 promotes activity-dependent neuronal tolerance for ischemic stroke2021

    • Author(s)
      Takahashi Hiroo、Asahina Ryo、Fujioka Masayuki、Matsui Takeshi K.、Kato Shigeki、Mori Eiichiro、Hioki Hiroyuki、Yamamoto Tohru、Kobayashi Kazuto、Tsuboi Akio
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 32 Pages: 66-72

    • DOI

      10.1073/pnas.2018850118

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Olig2-astrocytes express neutral amino acid transporter SLC7A10 (Asc-1) in the adult brain2021

    • Author(s)
      Kouko Tatsumi, Kaoru Kinugawa, Ayami Isonishi, Masahiro Kitabatake, Hiroaki Okuda, Shoko Takemura, Tatsuhide Tanaka, Eiichiro Mori & Akio Wanaka
    • Journal Title

      Molecular Brain

      Volume: 14 Issue: 1 Pages: 1-12

    • DOI

      10.1186/s13041-021-00874-8

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Gene expression profiles of human cerebral organoids identify PPAR pathway and PKM2 as key markers for oxygen-glucose deprivation and reoxygenation.2021

    • Author(s)
      Naoki Iwasa, et al.
    • Journal Title

      Frontiers in Cellular Neuroscience

      Volume: -

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transiently structured head domains control intermediate filament assembly2021

    • Author(s)
      Zhou Xiaoming、Lin Yi、Kato Masato、Mori Eiichiro、Liszczak Glen、Sutherland Lillian、Sysoev Vasiliy O.、Murray Dylan T.、Tycko Robert、McKnight Steven L.
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 8

    • DOI

      10.1073/pnas.2022121118

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 27‐Hydroxycholesterol regulates human SLC22A12 gene expression through estrogen receptor action2020

    • Author(s)
      Matsubayashi M、Sakaguchi YM.、Sahara Y、Nanaura H、Kikuchi S、Asghari A、Bui L、Kobashigawa S、Nakanishi M、Nagata R、Matsui TK.、Kashino G、Hasegawa M、Takasawa S、Eriguchi M、Tsuruya K、Nagamori S、Sugie K、Nakagawa T、Takasato M、Umetani M、Mori E
    • Journal Title

      The FASEB Journal

      Volume: 35 Issue: 1

    • DOI

      10.1096/fj.202002077r

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] C9orf72- derived proline:arginine poly-dipeptides disturb cytoskeletal architecture2020

    • Author(s)
      Tomo Shiota
    • Journal Title

      BioRxiv

      Volume: -

    • DOI

      10.1101/2020.10.14.338566

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparative analysis of human brain organoids of brainstem and midbrain at single-cell resolution2020

    • Author(s)
      Kinugawa Kaoru、Luginbuhl Joachim、Matsui Takeshi K.、Eura Nobuyuki、Sakaguchi Yoshihiko M.、Shin Jay W、Sugie Kazuma、Schwamborn Jens C.、Mori Eiichiro
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2020.09.02.279380

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Proteolytic cleavage of Podocin by Matriptase exacerbates podocyte injury2020

    • Author(s)
      Ozawa Shota、Matsubayashi Masaya、Nanaura Hitoki、Yanagita Motoko、Mori Kiyoshi、Asanuma Katsuhiko、Kajiwara Nobuyuki、Hayashi Kazuyuki、Ohashi Hiroshi、Kasahara Masato、Yokoi Hideki、Kataoka Hiroaki、Mori Eiichiro、Nakagawa Takahiko
    • Journal Title

      Journal of Biological Chemistry

      Volume: 295 Issue: 47 Pages: 16002-16012

    • DOI

      10.1074/jbc.ra120.013721

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Single-cell transcriptomics reveals multiple neuronal cell types in human midbrain-specific organoids2020

    • Author(s)
      Smits Lisa M.、Magni Stefano、Kinugawa Kaoru、Grzyb Kamil、Luginbuhl Joachim、Sabate-Soler Sonia、Bolognin Silvia、Shin Jay W.、Mori Eiichiro、Skupin Alexander、Schwamborn Jens C.
    • Journal Title

      Cell and Tissue Research

      Volume: 382 Issue: 3 Pages: 463-476

    • DOI

      10.1007/s00441-020-03249-y

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Inhibition of the ATR kinase enhances 5-FU sensitivity independently of nonhomologous end-joining and homologous recombination repair pathways2020

    • Author(s)
      Ito Soichiro S.、Nakagawa Yosuke、Matsubayashi Masaya、Sakaguchi Yoshihiko M.、Kobashigawa Shinko、Matsui Takeshi K.、Nanaura Hitoki、Nakanishi Mari、Kitayoshi Fumika、Kikuchi Sotaro、Kajihara Atsuhisa、Tamaki Shigehiro、Sugie Kazuma、Kashino Genro、Takahashi Akihisa、Hasegawa Masatoshi、Mori Eiichiro、Kirita Tadaaki
    • Journal Title

      Journal of Biological Chemistry

      Volume: 295 Issue: 37 Pages: 12946-12961

    • DOI

      10.1074/jbc.ra120.013726

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] RT-qPCR analyses on the osteogenic differentiation from human iPS cells: an investigation of reference genes2020

    • Author(s)
      Okamura Kensuke、Inagaki Yusuke、Matsui Takeshi K.、Matsubayashi Masaya、Komeda Tomoya、Ogawa Munehiro、Mori Eiichiro、Tanaka Yasuhito
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 11748-11748

    • DOI

      10.1038/s41598-020-68752-2

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Brainstem organoids from human pluripotent stem cells2020

    • Author(s)
      Nobuyuki Eura, Takeshi K. Matsui, Joachim Luginbuhl, Masaya Matsubayashi, Hitoki Nanaura, Tomo Shiota, Kaoru Kinugawa, Naohiko Iguchi, Takao Kiriyama, Canbin Zheng, Tsukasa Kouno, Yan Jun Lan, Pornparn Kongpracha, Pattama Wiriyasermkul, Yoshihiko M. Sakaguchi, Riko Nagata, Tomoya Komeda, Naritaka Morikawa, et al.
    • Journal Title

      Frontiers in Neuroscience

      Volume: - Pages: 00538-00538

    • DOI

      10.3389/fnins.2020.00538

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 神経難病の病態解明と創薬への取り組み2023

    • Author(s)
      森 英一朗
    • Organizer
      東京医科歯科大学 第15回CBIR若手シンポ・第76回大学院セミナー
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] C9orf72変異に関連した相分離異常と疾患発症2023

    • Author(s)
      森 英一朗
    • Organizer
      第21回神経・筋の免疫疾患を考える会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 相分離の駆動・制御・破綻と神経難病2023

    • Author(s)
      森 英一朗
    • Organizer
      第4回生体内超分子システム研究会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 神経変性疾患における相分離破綻モデル2023

    • Author(s)
      森 英一朗
    • Organizer
      日本小脳学会 第13回学術集会・総会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 相分離破綻とC9orf722022

    • Author(s)
      森 英一朗
    • Organizer
      第30回日本Cell Death学会学術集会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 温熱ストレスに対する液-液相分離反応に関する研究2022

    • Author(s)
      森 英一朗
    • Organizer
      第39回日本ハイパーサーミア学会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 生物学的相分離の駆動と制御2022

    • Author(s)
      森 英一朗
    • Organizer
      TI-FRIS/FRIS Life Science Seminar 2022-2023 (Vol. 5)
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 神経変性疾患における相分離生物学2022

    • Author(s)
      森 英一朗
    • Organizer
      日本神経学会 難治性神経疾患基礎研究支援事業シンポジウム 脳神経内科ウェブセミナー:神経変性疾患における「相分離制御」 と 「分解機構」の機能破綻
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Recognition of cross-β structure2022

    • Author(s)
      Mori E
    • Organizer
      The 2nd International Symposium on Human InformatiX: Sensing, Modeling, and Controlling Omics in Biomedicine
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] low-complexityドメインの破綻がALS-FTDをきたす2021

    • Author(s)
      森 英一朗, 杉江 和馬
    • Organizer
      62nd Annual Meeting of the Japanese Society of Neurology
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Biological phase separation in neurological disorders2021

    • Author(s)
      Eiichiro Mori, Hitoki Nanaura, Tomo Shiota, Naohiko Iguchi, Kazuma Sugie
    • Organizer
      62nd Annual Meeting of the Japanese Society of Neurology
    • Related Report
      2021 Annual Research Report
  • [Presentation] 相分離生物学:分子集合状態と分子シャペロンによる制御2021

    • Author(s)
      森 英一朗
    • Organizer
      日本ハイパーサーミア学会38回大会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] タンパク質の老い:相分離とアミロイド形成2021

    • Author(s)
      森 英一朗
    • Organizer
      第94回日本生化学大会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 相分離メガネで見る分子の「密」.2021

    • Author(s)
      森 英一朗.
    • Organizer
      39th Scienc-ome
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] C9orf72-derived PR poly-dipeptides compromise phase separation of low-complexity protein sequences and nucleocytoplasmic transport.2020

    • Author(s)
      Eiichiro Mori.
    • Organizer
      第20回日本蛋白質科学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Toxic PR poly-dipeptides encoded by the C9orf72 repeat expansion alter actin dynamics.2020

    • Author(s)
      Tomo Shiota, Hitoki Nanaura, Eiichiro Mori, Kazuma Sugie.
    • Organizer
      第61回日本神経学会学術大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Oxygen-glucose deprivation and reperfusion compromises lipid metabolism in human cerebral organoids.2020

    • Author(s)
      Naoki Iwasa,Takeshi K. Matsui,Naohiko Iguchi,Tomo Shiota,Nobuyuki Eura,Kozue Saito,Eiichiro Mori, Kazuma Sugie.
    • Organizer
      第61回日本神経学会学術大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Single-cell RNA-sequencing analysis on human brainstem organoids.2020

    • Author(s)
      Kaoru Kinugawa, Takeshi K. Matsui, Nobuyuki Eura, Hitoki Nanaura, Tomo Shiota, Naohiko Iguchi, Takao Kiriyama, Eiichiro Mori, Kazuma Sugie.
    • Organizer
      第61回日本神経学会学術大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Brainstem organoids from human pluripotent stem cells accommodate multiple types of cell population.2020

    • Author(s)
      Nobuyuki Eura, Takeshi K. Matsui, Hitoki Nanaura, Tomo Shiota, Kaoru Kinugawa, Naohiko Iguchi, Takao Kiriyama, Eiichiro Mori, Kazuma Sugie.
    • Organizer
      第61回日本神経学会学術大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] C9orf72-derived PR poly-dipeptides target Kap beta-2 through NLS binding site and dysregulate LLPS.2020

    • Author(s)
      Hitoki Nanaura,Tomo Shiota,Eiichiro Mori,Kazuma Sugie.
    • Organizer
      第61回日本神経学会学術大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Non-neural cells induced in human cerebral organoids.2020

    • Author(s)
      Takeshi K. Matsui, Naohiko Iguchi, Kaoru Kinugawa, Eiichiro Mori, Kazuma Sugie.
    • Organizer
      第61回日本神経学会学術大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] C9orf72-derived PR poly-dipeptides compromise phase separation of low-complexity protein sequences.2020

    • Author(s)
      Eiichiro Mori,Hitoki Nanaura,Tomo Shiota,Kazuma Sugie.
    • Organizer
      第61回日本神経学会学術大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 過剰自己貪食を伴うX 連鎖性ミオパチー(XMEA)の全国実態調査 Clinical features of X-linked myopathy with excessive autophagy (XMEA) in Japan: A nationwide survey.2020

    • Author(s)
      杉江 和馬, 小牧 宏文, 倉重 毅志, 大熊 彩, 江浦 信之, 塩田 智, 井口 直彦, 松井 健, 阿部 達哉, 形岡 博史, 森 英一朗, 埜中 征哉, 西野 一三.
    • Organizer
      第61回日本神経学会学術大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 生物学的相分離の制御と破綻.2020

    • Author(s)
      森 英一朗.
    • Organizer
      分子夾雑の生命化学:第1回東海地区シンポジウム
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Biological phase separation: Going beyond “classical molecular biology” (2AW-17).2020

    • Author(s)
      Eiichiro Mori, Akira Matsuura.
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 生物学的相分離制御因子の阻害機構.2020

    • Author(s)
      森 英一朗.
    • Organizer
      Chem for研究会(CCPC: Chemistry for Complex Processes in Cells)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Book] 相分離生物学の全貌(現代化学増刊46)2020

    • Author(s)
      加藤 昌人、森 英一朗(編:白木 賢太郎)
    • Total Pages
      400
    • Publisher
      東京化学同人
    • ISBN
      9784807913466
    • Related Report
      2020 Annual Research Report
  • [Remarks] 奈良県立医科大学 未来基礎医学

    • URL

      https://www.mirai-nmu.com/

    • Related Report
      2020 Annual Research Report

URL: 

Published: 2020-04-28   Modified: 2024-01-30  

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