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Imaging biopsy connecting detection of genetic mutation with prognostic prediction

Research Project

Project/Area Number 20K08084
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 52040:Radiological sciences-related
Research InstitutionKyushu University

Principal Investigator

Arimura Hidetaka  九州大学, 医学研究院, 教授 (20287353)

Co-Investigator(Kenkyū-buntansha) 田中 謙太郎  九州大学, 大学病院, 助教 (00536849)
Project Period (FY) 2020-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2022: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2021: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2020: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords画像生検 / 穴解析 / 肺癌 / 位相幾何学 / ベッチ数マップ / 画像不変量 / 画像生検法 / ベッチ数特徴量 / 遺伝子画像バイオマーカー / EGFRサブタイプ分類 / 再発予測 / EGFR変異肺癌 / 遺伝子変異 / 特徴量 / 予後予測
Outline of Research at the Start

医用画像から求めた特徴量に基づき遺伝子変異を検出するため、申請者は画像生検法を提案した。さらに分子標的薬治療支援を最終目的として、予後予測へつなぐ基礎研究を行ってきた。しかし、各患者や撮像装置間の画質の変動が原因で、上記検出と予後予測性能が低下することが分かった。そこで、本研究では頑強な画像特徴量を明らかにすることで、遺伝子変異肺癌の予後予測可能な非侵襲的画像生検法を開発する。

Outline of Final Research Achievements

The theory focused on in this study is topology, which is called a soft geometry, a theory that classifies objects by the number of holes without regard to their concrete shapes. In this study, we call it "hole analysis" [Hidetaka Arimura et al. Medical Imaging and Information Sciences 2023]. Since lung cancers with EGFR mutations tend to show cavities and bubbles on images, we hypothesized that the hole analysis would be feasible for detection of EGFR mutations. In this study, we used Betti number map features to identify image invariant features corresponding to EGFR mutations and developed a noninvasive image biopsy with the hole analysis. We demonstrated that the Betti number map features based on topology can detect lung cancer with EGFR mutations (including subtype classification of Del19/L858R mutations), which is the hypothesis we proved in this study.

Academic Significance and Societal Importance of the Research Achievements

位相幾何学に基づくベッチ数マップ特徴量による予測モデルは、非小細胞肺癌患者におけるEGFR変異の同定において、CT装置/撮像パラメータの変動に対して従来モデルよりも高い頑健性を示した。さらに、EGFR Del19/L858R変異のサブタイプの特徴と遺伝学的関連を示した3Dベッチ数マップ特徴量は、従来特徴量と比較してサブタイプ分類に高い精度を示した。
現状の生検では、不均一な遺伝子変異を持つ腫瘍の遺伝子変異予測を過小または過大評価する可能性があるが、この問題を提案する画像生検が解決できる可能性がある。また、生検不可または拒否の患者に対して画像生検を適用できる。

Report

(5 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • Research Products

    (33 results)

All 2023 2022 2021 2020 Other

All Int'l Joint Research (4 results) Journal Article (13 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 11 results,  Open Access: 8 results) Presentation (9 results) (of which Int'l Joint Research: 8 results,  Invited: 5 results) Book (1 results) Remarks (4 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Int'l Joint Research] マラヤ大学(マレーシア)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] Sanford Burnham Prebys Medical Discovery(米国)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] マラヤ大学(マレーシア)

    • Related Report
      2022 Research-status Report
  • [Int'l Joint Research] マラヤ大学(マレーシア)

    • Related Report
      2021 Research-status Report
  • [Journal Article] CT Image-Based Biopsy to Aid Prediction of HOPX Expression Status and Prognosis for Non-Small Cell Lung Cancer Patients2023

    • Author(s)
      Jin Yu、Arimura Hidetaka、Cui YunHao、Kodama Takumi、Mizuno Shinichi、Ansai Satoshi
    • Journal Title

      Cancers

      Volume: 15 Issue: 8 Pages: 2220-2220

    • DOI

      10.3390/cancers15082220

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Magnetic resonance-based imaging biopsy with signatures including topological Betti number features for prediction of primary brain metastatic sites2023

    • Author(s)
      Egashira Mai、Arimura Hidetaka、Kobayashi Kazuma、Moriyama Kazutoshi、Kodama Takumi、Tokuda Tomoki、Ninomiya Kenta、Okamoto Hiroyuki、Igaki Hiroshi
    • Journal Title

      Physical and Engineering Sciences in Medicine

      Volume: 46 Issue: 4 Pages: 1411-1426

    • DOI

      10.1007/s13246-023-01308-6

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Combination of Clinical Factors and Radiomics Can Predict Local Recurrence and Metastasis After Stereotactic Body Radiotherapy for Non-small Cell Lung Cancer2023

    • Author(s)
      ISOYAMA-SHIRAKAWA YUKO、YOSHITAKE TADAMASA、NINOMIYA KENTA、ASAI KAORI、MATSUMOTO KEIJI、SHIOYAMA YOSHIYUKI、KODAMA TAKUMI、ISHIGAMI KOUSEI、ARIMURA HIDETAKA
    • Journal Title

      Anticancer Research

      Volume: 43 Issue: 11 Pages: 5003-5013

    • DOI

      10.21873/anticanres.16699

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Three-dimensional topological radiogenomics of epidermal growth factor receptor Del19 and L858R mutation subtypes on computed tomography images of lung cancer patients2023

    • Author(s)
      Ninomiya Kenta、Arimura Hidetaka、Tanaka Kentaro、Chan Wai Yee、Kabata Yutaro、Mizuno Shinichi、Gowdh Nadia Fareeda Muhammad、Yaakup Nur Adura、Liam Chong-Kin、Chai Chee-Shee、Ng Kwan Hoong
    • Journal Title

      Computer Methods and Programs in Biomedicine

      Volume: Epub ahead of print Pages: 107544-107544

    • DOI

      10.1016/j.cmpb.2023.107544

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Topology-based radiomic features for prediction of parotid gland cancer malignancy grade in magnetic resonance images2023

    • Author(s)
      Ikushima Kojiro、Arimura Hidetaka、Yasumatsu Ryuji、Kamezawa Hidemi、Ninomiya Kenta
    • Journal Title

      Magnetic Resonance Materials in Physics, Biology and Medicine

      Volume: 36 Issue: 5 Pages: 767

    • DOI

      10.1007/s10334-023-01084-0

    • Related Report
      2022 Research-status Report
    • Peer Reviewed
  • [Journal Article] Recurrence prediction with local binary pattern-based dosiomics in patients with head and neck squamous cell carcinoma2022

    • Author(s)
      Kamezawa Hidemi、Arimura Hidetaka
    • Journal Title

      Physical and Engineering Sciences in Medicine

      Volume: 46 Issue: 1 Pages: 99

    • DOI

      10.1007/s13246-022-01201-8

    • Related Report
      2022 Research-status Report
    • Peer Reviewed
  • [Journal Article] Dual segmentation models for poorly and well-differentiated hepatocellular carcinoma using two-step transfer deep learning on dynamic contrast-enhanced CT images2022

    • Author(s)
      Nagami Noriyuki、Arimura Hidetaka、Nojiri Junichi、Yunhao Cui、Ninomiya Kenta、Ogata Manabu、Oishi Mitsutoshi、Ohira Keiichi、Kitamura Shigetoshi、Irie Hiroyuki
    • Journal Title

      Physical and Engineering Sciences in Medicine

      Volume: 46 Issue: 1 Pages: 83-97

    • DOI

      10.1007/s13246-022-01202-7

    • Related Report
      2022 Research-status Report
    • Peer Reviewed
  • [Journal Article] Relapse predictability of topological signature on pretreatment planning <scp>CT</scp> images of stage I non‐small cell lung cancer patients before treatment with stereotactic ablative radiotherapy2022

    • Author(s)
      Kodama Takumi、Arimura Hidetaka、Shirakawa Yuko、Ninomiya Kenta、Yoshitake Tadamasa、Shioyama Yoshiyuki
    • Journal Title

      Thoracic Cancer

      Volume: 13 Issue: 15 Pages: 2117-2126

    • DOI

      10.1111/1759-7714.14483

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synergistic combination of a topologically invariant imaging signature and a biomarker for the accurate prediction of symptomatic radiation pneumonitis before stereotactic ablative radiotherapy for lung cancer: A retrospective analysis2022

    • Author(s)
      K. Ninomiya, H. Arimura, T. Yoshitake, T. Hirose and Y. Shioyama
    • Journal Title

      PLoS One

      Volume: - Issue: 1 Pages: e0263292-e0263292

    • DOI

      10.1371/journal.pone.0263292

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 高精度がん治療支援のための画像生検 -レディオミクスで抽出できる情報-2022

    • Author(s)
      有村秀孝、兒玉拓巳、浦上暉允、亀澤秀美、廣瀬貴章、二宮健太
    • Journal Title

      日本放射線技術学会雑誌

      Volume: 78 Pages: 219-224

    • Related Report
      2021 Research-status Report
    • Open Access
  • [Journal Article] Stratification of prostate cancer patients into low‐ and high‐grade groups using multiparametric magnetic resonance radiomics with dynamic contrast‐enhanced image joint histograms2021

    • Author(s)
      Urakami Akimasa、Arimura Hidetaka、Takayama Yukihisa、Kinoshita Fumio、Ninomiya Kenta、Imada Kenjiro、Watanabe Sumiko、Nishie Akihiro、Oda Yoshinao、Ishigami Kousei
    • Journal Title

      The Prostate

      Volume: 82 Issue: 3 Pages: 330-344

    • DOI

      10.1002/pros.24278

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Robust radiogenomics approach to the identification of EGFR mutations among patients with NSCLC from three different countries using topologically invariant Betti numbers2021

    • Author(s)
      Ninomiya Kenta、Arimura Hidetaka、Chan Wai Yee、Tanaka Kentaro、Mizuno Shinichi、Muhammad Gowdh Nadia Fareeda、Yaakup Nur Adura、Liam Chong-Kin、Chai Chee-Shee、Ng Kwan Hoong
    • Journal Title

      PLOS ONE

      Volume: 16 Issue: 1 Pages: e0244354-e0244354

    • DOI

      10.1371/journal.pone.0244354

    • Related Report
      2020 Research-status Report
  • [Journal Article] Automated approach for segmenting gross tumor volumes for lung cancer stereotactic body radiation therapy using CT-based dense V-networks2021

    • Author(s)
      Cui Yunhao、Arimura Hidetaka、Nakano Risa、Yoshitake Tadamasa、Shioyama Yoshiyuki、Yabuuchi Hidetake
    • Journal Title

      Journal of Radiation Research

      Volume: 62 Issue: 2 Pages: 346-355

    • DOI

      10.1093/jrr/rraa132

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Prediction Model for the Time Variant Trajectories of Lung Tumor Growths After Tyrosine Kinase Inhibitor Therapy2023

    • Author(s)
      Rintaro Furuta, Hidetaka Arimura, Kentaro Tanaka, Yutaro Kabata, Mai Egashira
    • Organizer
      SEACOMP & PITFMB 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Topological Radiomics of Explainable AI2023

    • Author(s)
      Hidetaka Arimura
    • Organizer
      SEACOMP & PITFMB 2023
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Applications of topological radiomics (Medical imaging signatures with topology for cancer)2023

    • Author(s)
      Hidetaka Arimura
    • Organizer
      WORKSHOP on Mathematics for Industry, Warsaw
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Topological prediction models for relapse of stage I patients with non-small cell lung cancer prior to stereotactic ablative radiotherapy2023

    • Author(s)
      Takumi Kodama, Hidetaka Arimura, Yuko Shirakawa, Kenta Ninomiya, Tadamasa Yoshitake, Yoshiyuki Shioyama
    • Organizer
      SPIE Medical Imaging 2023, San Diego
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research
  • [Presentation] 癌治療におけるレディオミクスとAI(特別講演)2022

    • Author(s)
      有村秀孝
    • Organizer
      第十七回前立腺癌密封小線源永久挿入治療研究会
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] Novel imaging biopsy models for characterizing tumors and its surrounding tissue2021

    • Author(s)
      Hidetaka Arimura
    • Organizer
      19th SEACOMP, 13th TMPS and the 14th ACOMP
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Radiomics and imaging biopsy approaches for precision medicine2021

    • Author(s)
      Hidetaka Arimura
    • Organizer
      The 9th Korea-Japan Joint Meeting on Medical Physics, KJMP2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Novel recognition approach of TKI-sensitizing EGFR mutations in non-small cell lung cancer patients using topologically invariant Betti numbers2021

    • Author(s)
      Kenta Ninomiya, Hidetaka Arimura, Wai Yee Chan, Kentaro Tanaka, Shinichi Mizuno, Nadia Fareeda Muhammad Gowdh, Nur Adura Yaakup, Chong-Kin Liam, Chee-Shee Chai, Kwan Hoong Ng
    • Organizer
      International Forum on Medical Imaging in Asia (IFMIA) 2021
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Prediction of Tumor Growth Trajectories During Molecularly Targeted Therapy Based on Mathematical Models2020

    • Author(s)
      Truong Gia Huy, Hidetaka Arimura, Kentaro Tanaka, Kenta Ninomiya
    • Organizer
      20th Asia-Oceania Congress on Medical Physics (AOCMP), 18th South-East Asian Congress of Medical Physics (SEACOMP)
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Book] レディオミクス入門2021

    • Author(s)
      有村 秀孝、角谷 倫之
    • Total Pages
      338
    • Publisher
      オーム社
    • ISBN
      9784274226380
    • Related Report
      2021 Research-status Report
  • [Remarks] Arimura Laboratory

    • URL

      http://web.shs.kyushu-u.ac.jp/~arimura/

    • Related Report
      2023 Annual Research Report
  • [Remarks] http://www.shs.kyushu-u.ac.jp/~arimura/

    • Related Report
      2022 Research-status Report
  • [Remarks] http://www.shs.kyushu-u.ac.jp/~arimura/

    • Related Report
      2021 Research-status Report
  • [Remarks] http://www.shs.kyushu-u.ac.jp/~arimura/

    • Related Report
      2020 Research-status Report
  • [Patent(Industrial Property Rights)] 治療効果予測装置、治療効果予測方法、および治療効果予測2021

    • Inventor(s)
      有村秀孝
    • Industrial Property Rights Holder
      有村秀孝
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2021-069728
    • Filing Date
      2021
    • Related Report
      2021 Research-status Report
  • [Patent(Industrial Property Rights)] 肺がん評価装置及び肺がん評価方法2020

    • Inventor(s)
      有村秀孝
    • Industrial Property Rights Holder
      有村秀孝
    • Industrial Property Rights Type
      特許
    • Filing Date
      2020
    • Related Report
      2020 Research-status Report
    • Overseas

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Published: 2020-04-28   Modified: 2025-01-30  

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