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Structural analysis of the interaction between the Ku protein and DNA

Research Project

Project/Area Number 21510063
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Risk sciences of radiation/Chemicals
Research InstitutionNational Institute of Infectious Diseases

Principal Investigator

FUJIMOTO Hirofumi  国立感染症研究所, 放射能管理室, 主任研究官 (60373396)

Co-Investigator(Kenkyū-buntansha) KOIKE Manabu  独立行政法人放射線医学総合研究所, 放射線障害研究グループ, 主任研究員 (70280740)
Co-Investigator(Renkei-kenkyūsha) SAKUDOH Takashi  国立感染症研究所, 放射能管理室, 主任研究官 (70455393)
TSUCHIDA Kozo  国立感染症研究所, 放射能管理室, 室長 (40231435)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2011: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2010: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
KeywordsDNA二本鎖切断 / Ku / DNA損傷認識 / 分子動力学シミュレーション / Kuタンパク質
Research Abstract

The binding mechanism of the repair enzyme, Ku, to the end of double strand DNA was examined by both computational and experimental techniques. Molecular models of Ku-DNA complex were constructed to estimate the binding energy between Ku and DNA, and amino acids that would interact with both DNA and Ku itself were identified. The new Ku-deficient cell line was established to investigate a detailed function of the predicted region.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (16 results)

All 2012 2011 2010 2009 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (12 results)

  • [Journal Article] A possible overestimation of the effect of acetylation on lysine residues in KQ mutant analysis2012

    • Author(s)
      Hirofumi Fujimoto, Mariko Higuchi, Manabu Koike, Hirotaka Ode, Miroslav Pinak, Juraj Kotulic Bunta, Toshiyuki Nemoto, Takashi Sakudoh, Naoko Honda, Hideaki Maekawa, Kimiaki Saito, Kozo Tsuchida
    • Journal Title

      J. Comput. Chem

      Volume: 33 Issue: 3 Pages: 239-246

    • DOI

      10.1002/jcc.21956

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of Ku70-Deficient Lung Epithelial Cell Lines and Their Hypersensitivity to Low-Dose X-Irradiation2011

    • Author(s)
      Manabu KOIKE, Yasutomo YUTOKU, Aki KOIKE
    • Journal Title

      Journal of Veterinary Medical Science

      Volume: 73 Issue: 5 Pages: 549-554

    • DOI

      10.1292/jvms.10-0454

    • NAID

      130000444626

    • ISSN
      0916-7250, 1347-7439
    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Accumulation of Ku70 at DNA double-strand breaks in living epithelial cells2011

    • Author(s)
      Manabu Koike, Yasutomo Yutoku, Aki Koike
    • Journal Title

      Exp. Cell. Res

      Volume: 317 Issue: 17 Pages: 2429-2437

    • DOI

      10.1016/j.yexcr.2011.07.018

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of Ku70-Deficient Lung Epithelial Cell Lines and Their Hypersensitivity to Low-Dose X-Irradiation.

    • Author(s)
      Manabu KOIKE, Yasutomo YUTOKU, Aki KOIKE
    • Journal Title

      Journal of Veterinary Medical Science 14

      Volume: in press

    • NAID

      130000444626

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] がん細胞への放射線作用とDNA修復機構2011

    • Author(s)
      小池学
    • Organizer
      昭和大学腫瘍分子研セミナー
    • Place of Presentation
      東京
    • Year and Date
      2011-10-17
    • Related Report
      2011 Final Research Report
  • [Presentation] がん細胞への放射線作用とDNA修復機構2011

    • Author(s)
      小池学
    • Organizer
      昭和大学腫瘍分子研セミナー
    • Place of Presentation
      東京,品川
    • Year and Date
      2011-10-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural analysis of the interaction between the Ku protein and DNA2011

    • Author(s)
      Fujimoto H
    • Organizer
      The 14th International Congress of Radiation Research(ICRR2011)
    • Place of Presentation
      Warsaw, Czech republic
    • Year and Date
      2011-08-31
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural analysis of the interaction between the Ku protein and DNA2011

    • Author(s)
      Fujimoto H, et al
    • Organizer
      The 14th International Congress of Radiation Research (ICRR2011)
    • Place of Presentation
      Warsaw, Czech republic(招待講演)
    • Year and Date
      2011-08-31
    • Related Report
      2011 Annual Research Report
  • [Presentation] 計算化学的手法を用いたKuタンパク質とDNAの相互作用部位の構造解析2010

    • Author(s)
      藤本浩文
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会(BMB2010)
    • Place of Presentation
      兵庫
    • Year and Date
      2010-12-07
    • Related Report
      2011 Final Research Report
  • [Presentation] 計算化学的手法を用いたKuタンパク質とDNAの相互作用部位の構造解析2010

    • Author(s)
      藤本浩文, 樋口真理子, 小池学, Miroslav Pinak, Juraj Kotulic Bunta, 根本俊行, 前川秀彰, 作道隆, 高田直子, 土田耕三
    • Organizer
      BMB2010事務局(第33回日本分子生物学会年会・第83回日本生化学会大会合同大会)
    • Place of Presentation
      神戸ホトアイランド(兵庫県)
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structural analysis of the interaction between the Ku protein and DNA2009

    • Author(s)
      藤本浩文
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      神奈川
    • Year and Date
      2009-12-11
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural analysis of the interaction between the Ku protein and DNA2009

    • Author(s)
      藤本浩文
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] 近紫外線レーザーマイクロ照射によるDNA修復酵素の挙動解析2009

    • Author(s)
      小池学
    • Organizer
      第4回高崎量子応用研究シンポジウム
    • Place of Presentation
      群馬
    • Year and Date
      2009-10-09
    • Related Report
      2011 Final Research Report
  • [Presentation] 近紫外線レーザーマイクロ照射によるDNA修復酵素の挙動解析2009

    • Author(s)
      小池学
    • Organizer
      第4回 高崎量子応用研究シンポジウム
    • Place of Presentation
      高崎シティギャラリー・コアホール(群馬県)
    • Year and Date
      2009-10-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] Molecular mechanisms of DNA double-strand break recognition process by NHEJ factor Ku in mammalian living cells2009

    • Author(s)
      小池学
    • Organizer
      第68回日本癌学会学術総会
    • Place of Presentation
      神奈川
    • Year and Date
      2009-10-01
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular mechanisms of DNA double-strand break recognition process by NHEJ factor Ku in mammalian living cells2009

    • Author(s)
      小池学
    • Organizer
      第68回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-10-01
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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