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Study on the urochordate(tunicate) evolution based on the diversity of mitochondrial genome structures and molecular phylogenetic analysis based on mitochondrial genes

Research Project

Project/Area Number 21570101
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionTokyo University of Pharmacy and Life Science

Principal Investigator

YOKOBORI Shin-ichi  東京薬科大学, 生命科学部, 講師 (40291702)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2011: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsミトコンドリアゲノム / 分子系統解析 / 尾索動物 / 尾策動物 / タリア綱 / ヒカリボヤ
Research Abstract

By determination of complete nucleotide sequences of urochordate mitochondrial genomes, we analyzed urochordate phylogeny based on the primary sequences and higher information. We analyzed urochordate phylogeny based on mitochondrial protein gene sequences including a pyrosomatid Pyrosoma atlanticum. The analysis suggested that the Thaliacea is a subgroup of Enterogona. Entrogona(Stolidobranchia and Aplousobranchia) seems to be paraphyletic group. In particular, Cioninae of Cionidae, Stolidobranchia is suggested to be sister group of Aplousobranchia, and Diazoninae of Cioninae is suggested to be the in-group of Aplousobranchia.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (33 results)

All 2012 2011 2010 2009

All Journal Article (12 results) (of which Peer Reviewed: 8 results) Presentation (21 results)

  • [Journal Article] Male death resulting from hybridisation between subspecies of the gypsy moth, Lymantria dispar.2011

    • Author(s)
      Higashiura, Y., H. Yamaguchi, M. Ishihara, N. Ono, H. Tsukagoshi, S. Yokobori, S. Tokishita, H. Yamagata, & T. Fukatsu
    • Journal Title

      Heredity

      Volume: 106 Pages: 603-613

    • Related Report
      2011 Final Research Report
  • [Journal Article] Taurine-containing uridine modifications in tRNA anticodons are required to decipher non-universal genetic codes in ascidian mitochondria2011

    • Author(s)
      Suzuki, T., K. Miyauchi, T. Suzuki, S. Yokobori, N. Shigi, A. Kondow, N. Takeuchi, A. Yamagishi, & K. Watanabe
    • Journal Title

      J. Biol. Chem

      Volume: 286 Pages: 35494-35498

    • Related Report
      2011 Final Research Report
  • [Journal Article] tRNA modification and genetic code variations in animal mitochondria2011

    • Author(s)
      Watanabe, K. & S. Yokobori
    • Journal Title

      J. Nucleic Acids. Article

      Volume: 2011 Pages: 1-12

    • DOI

      10.4061/2011/623095

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic code : introduction(Version 2)2011

    • Author(s)
      Watanabe, K. & S. Yokobori
    • Journal Title

      Encyclopedia of Life Science

    • DOI

      10.1002/9780470015902.a0000809.pub2

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Male death resulting from hybridisation between subspecies of the gypsy moth, Lymantria dispar2011

    • Author(s)
      Higashiura, Y., H.Yamaguchi, M.Ishihara, N.Ono, H.Tsukagoshi, S.Yokobori, S.Tokishita, H.Yamagata, T.Fukatsu
    • Journal Title

      Heredity

      Volume: 106 Issue: 4 Pages: 603-613

    • DOI

      10.1038/hdy.2010.92

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Taurine-containing uridine modifications in tRNA anticodons are required to decipher non-universal genetic codes in ascidian mitochondria2011

    • Author(s)
      Suzuki T (第1著者), 他8名
    • Journal Title

      J. Biol. Chem

      Volume: 286 Issue: 41 Pages: 35494

    • DOI

      10.1074/jbc.m111.279810

    • URL

      https://pure.teikyo.jp/en/publications/70d6d0f7-88b7-4afe-a2b1-a2ea848a121b

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Repetitive sequences in the lamprey mitochondrial DNA control region and speciation of Lethenteron2010

    • Author(s)
      Okada, K., Y. Yamazaki, S. Yokobori, & H. Wada
    • Journal Title

      Gene

      Volume: 465 Pages: 45-52

    • NAID

      120007137933

    • Related Report
      2011 Final Research Report
  • [Journal Article] The complete mitochondrial genome of Caprella scaura(Caprellidea) with a note on a unique gene order pattern and duplicated control region2010

    • Author(s)
      Ito, A., M. Aoki, S. Yokobori, & H. Wada
    • Journal Title

      Mitochondrial DNA

      Volume: 21 Pages: 183-190

    • Related Report
      2011 Final Research Report
  • [Journal Article] Evolution of genetic code2010

    • Author(s)
      Yokobori, S., T. Ueda, & K. Watanabe
    • Journal Title

      Encyclopedia of Life Science 2010

    • DOI

      10.1002/9780470015902.a0000548.pub2

    • URL

      http://www.els.net/

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Repetitive sequences in the lamprey mitochondrial DNA control region and speciation of Lethenteron.2010

    • Author(s)
      Okada, K., Y.Yamazaki, S.Yokobori, H.Wada
    • Journal Title

      Gene

      Volume: 465 Pages: 45-52

    • NAID

      120007137933

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The complete mitochondrial genome of Caprella scaura (Caprellidea) with a note on a unique gene order pattern and duplicated control region.2010

    • Author(s)
      Ito, A., M.Aoki, S.Yokobori, H.Wada?
    • Journal Title

      Mitochondrial DNA

      Volume: 21 Pages: 183-190

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of genetic code (Version2)2010

    • Author(s)
      Yokobori, S., T.Ueda, K.Watanabe
    • Journal Title

      Encyclopedia of Life Science (In press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] ミトコンドリアtRNAの解析から見た遺伝暗号の進化2012

    • Author(s)
      横堀伸一、山岸明彦、渡辺公綱
    • Organizer
      第37回生命の起原と進化学会学術講演会
    • Place of Presentation
      高槻(2012/03)
    • Year and Date
      2012-03-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] シロウリガイ類のミトコンドリアゲノム解析2012

    • Author(s)
      小澤元希、島村繁、高木善弘、横堀伸一、前田太郎、丸山正、吉田尊雄
    • Organizer
      ブルーアース2012
    • Place of Presentation
      東京
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] ミトコンドリアtRNAの解析から見た遺伝暗号の進化2012

    • Author(s)
      横堀伸一、山岸明彦、渡辺公綱
    • Organizer
      第37回生命の起原と進化学会学術講演会
    • Place of Presentation
      高槻
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular phylogeny of urochordates and evolution of mitochondrial genetic code in urochordate mitochondria2011

    • Author(s)
      Yokobori, S., K.Watanabe, A.Yamagishi
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜(2011/12)
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] 深海性二枚貝シロウリガイ類のミトコンドリアゲノム解析2011

    • Author(s)
      小澤元希、島村繁、高木善弘、横堀伸一、丸山正、吉田尊雄
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜(2011/12)
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] tRNAから見た遺伝暗号の進化2011

    • Author(s)
      横堀伸一
    • Organizer
      第4回アストロバイオロジーネットワークワークショップ
    • Place of Presentation
      神戸(2011/11)
    • Year and Date
      2011-11-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] ミトコンドリアゲノムに基づく尾索動物の分子系統解析2011

    • Author(s)
      大曽根祐、廣瀬裕一、和田洋、西川淳、倉林敦、山岸明彦、横堀伸一
    • Organizer
      日本動物学会第82回年次大会
    • Place of Presentation
      旭川、北海道
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Unique characteristics of ascidian mitochondrial tRNAs : Existence of 5-taurinometylyuridine-containing tRNAs involved in deciphering the non-universal genetic codes and an initiator tRNA corresponding to AUG codon2011

    • Author(s)
      Suzuki, T., K. Miyauchi, N. Shigi, A. Kondoh, N. Takeuchi, T. Suzuki, A. Yamagishi, S. Yokobori, & K. Watanabe.
    • Organizer
      RNA2011
    • Place of Presentation
      Kyoto
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] An approach to the origin of the genetic code table by inferring from variations in the extant genetic codes of animal mitochondria.2011

    • Author(s)
      Watanabe, K., S. Yokobori, & T. Suzuki
    • Organizer
      Symposium on behalf of prof. Tom Raj Bhandary
    • Place of Presentation
      Bangalore, India
    • Related Report
      2011 Final Research Report
  • [Presentation] 尾索動物ミトコンドリア遺伝暗号の進化2011

    • Author(s)
      横堀伸一、山岸明彦、渡辺公綱
    • Organizer
      日本進化学会第13回年会
    • Place of Presentation
      京都
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] ミトコンドリアゲノムに基づく尾索動物の分子系統解析2011

    • Author(s)
      大曽根祐、廣瀬裕一、和田洋、西川淳、倉林敦、山岸明彦、横堀伸一
    • Organizer
      動物学会
    • Place of Presentation
      旭川、北海道
    • Related Report
      2011 Final Research Report
  • [Presentation] tRNAから見た遺伝暗号の進化2011

    • Author(s)
      横堀伸一
    • Organizer
      第4回アストロバイオロジーネットワークワークショップ
    • Place of Presentation
      神戸
    • Related Report
      2011 Final Research Report
  • [Presentation] 深海性二枚貝シロウリガイ類のミトコンドリアゲノム解析2011

    • Author(s)
      小澤元希、島村繁、高木善弘、横堀伸一、丸山正、吉田尊雄
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] 尾索動物ミトコンドリア構造多様性の進化2010

    • Author(s)
      大曽根佑、倉持祐吾、和田洋、倉林敦、広瀬裕一、西川淳、山岸明彦、横堀伸一
    • Organizer
      第81回動物学会年会
    • Place of Presentation
      駒場
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 遺伝暗号の進化:ミトコンドリア遺伝情報系をモデルとして2010

    • Author(s)
      横堀伸一
    • Organizer
      第3回アストロバイオロジーネットワーク・ワークショップ
    • Place of Presentation
      多摩
    • Related Report
      2011 Final Research Report
  • [Presentation] ミトコンドリアゲノムに基づく尾索動物の分子系統解析2009

    • Author(s)
      横堀伸一、大曽根祐、倉林敦、西川淳、広瀬裕一、山岸明彦
    • Organizer
      日本動物学会年会
    • Place of Presentation
      静岡
    • Year and Date
      2009-09-19
    • Related Report
      2009 Annual Research Report
  • [Presentation] Molecular phylogeny of Urochordata (Tunicata) based on complete mitochondrial genome sequences and 18S rRNA gene sequences2009

    • Author(s)
      Yokobori, S., A.Kurabayashi, J.Nishikawa, Y.Ohsone, A.Yamagishi, E.Hirose
    • Organizer
      The 5th International Tunicate Meeting
    • Place of Presentation
      Okinawa
    • Year and Date
      2009-06-21
    • Related Report
      2009 Annual Research Report
  • [Presentation] Complete nucleotide sequences of mitochondrial genomes of two salps Ritteriella amboinensis and R.picteti.2009

    • Author(s)
      Ohsone, Y., H.Wada, J.Nishikawa, A.Kurabayashi, E.Hirose, A.Yamagishi, S.Yokobori
    • Organizer
      The 5th International Tunicate Meeting
    • Place of Presentation
      Okinawa
    • Year and Date
      2009-06-21
    • Related Report
      2009 Annual Research Report
  • [Presentation] Molecular phylogeny of Urochordata(Tunicata) based on complete mitochondrial genome sequences and 18S rRNA gene sequences2009

    • Author(s)
      Yokobori, S., A. Kurabayashi, J. Nishikawa, Y. Ohsone, A. Yamagishi, & E. Hirose.
    • Organizer
      The 5th International Tunicate Meeting
    • Place of Presentation
      Okinawa
    • Related Report
      2011 Final Research Report
  • [Presentation] Complete nucleotide sequences of mitochondrial genomes of two salps Ritteriella amboinensis and R. picteti2009

    • Author(s)
      Ohsone, Y., H. Wada, J. Nishikawa, A. Kurabayashi, E. Hirose, A. Yamagishi, & S. Yokobori
    • Organizer
      The 5th International Tunicate Meeting
    • Place of Presentation
      Okinawa
    • Related Report
      2011 Final Research Report
  • [Presentation] ミトコンドリアゲノムに基づく尾索動物の分子系統解析2009

    • Author(s)
      横堀伸一、大曽根祐、倉林敦、西川淳、広瀬裕一、山岸明彦
    • Organizer
      第80回日本動物学会年会
    • Place of Presentation
      静岡
    • Related Report
      2011 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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