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Biochemical analysis of the AGO-siRNA complex about DNA binding activity to induce the TGS (Transcriptional Gene Silencing).

Research Project

Project/Area Number 21570178
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionThe University of Tokyo (2010-2011)
Waseda University (2009)

Principal Investigator

ISHIDA Takaomi  東京大学, 医科学研究所, 特任准教授 (80293447)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2011: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2010: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2009: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords転写 / TGS / Gene Silencing / Argonaute / epigenetics / siRNA / アルゴノート / 転写調節 / gene silencing / HIV
Research Abstract

Our research group previously published data demonstrate that of siRNA targeting conserved regions of the untranscribed HIV-1 promoter region, a single dose of either Prom A siRNA induced prolonged and profound suppression of HIV re-production. Definitive evidence of transcriptional silencing (TGS) was provided to this repression of HIV reproduction by several assays. There is accumulating evidence the Argonaute family of siRNA binding proteins, play a pivotal role in siRNA induced TGS. In TGS Ago1 protein accumulates at the site of initiation of silencing. To explore the role of Ago1 in siRNA induced TGS of HIV-1, in vitro binding assay was established for detecting AGO1-siRNA complex can be bind to target DNA. This assay system clearly demonstrated that these complex canb ebind directly to taget DNA sequence. AGO1 protein was co-localized with siRNA when the cells infected HIV-1 by immune-staining assay. We also demonstrated that these TGS effects are dependent upon close matching between the siRNA and the target sequence.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (28 results)

All 2013 2012 2011 2010 2009

All Journal Article (8 results) Presentation (19 results) Book (1 results)

  • [Journal Article] Viral interference with host mRNA surveillance, the nonsense-mediated mRNA decay (NMD) pathway, through a new function of HTLV-1 Rex: implicationsfor retroviral replication.2013

    • Author(s)
      Nakano K, Ando T, Yamagishi M, Yokoyama K, Ishida T, Ohsugi T, Tanaka Y, Brighty DW, Watanabe T.
    • Journal Title

      Microbes Infect.

    • Related Report
      2011 Final Research Report
  • [Journal Article] HIV-1-encoded antisense RNA suppresses viral replication for a prolonged period.2012

    • Author(s)
      Kobayashi-Ishihara M, Yamagishi M, Hara T, Matsuda Y, Takahashi R, Miyake A, Nakano K, Yamochi T, Ishida T, Watanabe T.
    • Journal Title

      Retrovirology.

      Volume: 9 Pages: 38-38

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Journal Article] Direct evidence of nuclear Argonaute distribution during transcriptional silencing links the actin cytoskeleton to nuclear RNAi machinery in human cells.2012

    • Author(s)
      Ahlenstiel CL, Lim HG, Cooper DA, Ishida T, Kelleher AD, Suzuki K.
    • Journal Title

      Nucleic Acids Res.

      Volume: 40(4) Pages: 1579-95

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Journal Article] Transcriptional gene silencing of HIV-1 through promoter targeted RNA is highly specific.2011

    • Author(s)
      Suzuki K, Ishida T, Yamagishi M, Ahlenstiel C, Swaminathan S, Marks K, Murray D, McCartney EM, Beard MR, Alexander M, Purcell DF, Cooper DA, Watanabe T, Kelleher AD.
    • Journal Title

      RNA Biol.

      Volume: 8(6) Pages: 1035-46

    • Related Report
      2011 Final Research Report
  • [Journal Article] SMYD3 interacts with HTLV-1 Tax and regulates subcellular localization of Tax.2011

    • Author(s)
      Yamamoto K, Ishida T, Nakano K, Yamagishi M, Yamochi T, Tanaka Y, Furukawa Y, Nakamura Y, Watanabe T.
    • Journal Title

      Cancer Sci.

      Volume: 102(1) Pages: 260-6

    • NAID

      10029289377

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Journal Article] Epigenetic alteration of the NF-κB-inducing kinase (NIK) gene is involved in enhanced NIK expression in basal-like breast cancer.2010

    • Author(s)
      Yamamoto M, Ito T, Shimizu T, Ishida T, Semba K, Watanabe S, Yamaguchi N, Inoue J.
    • Journal Title

      Cancer Sci.

      Volume: 101 Pages: 2391-7

    • NAID

      10027833532

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Journal Article] Inhibition of active HIV-1 replication by NF-kappaB inhibitor DHMEQ.2010

    • Author(s)
      Miyake A, Ishida T, Yamagishi M, Hara T, Umezawa K, Watanabe T, Horie R.
    • Journal Title

      Microbes Infect.

      Volume: 12(5) Pages: 400-8

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Journal Article] Retroviral delivery of promoter-targeted shRNA induces long-term silencing ofHIV-1 transcription.2009

    • Author(s)
      Yamagishi M, Ishida T, Miyake A, Cooper DA, Kelleher AD, Suzuki K, Watanabe T.
    • Journal Title

      Microbes Infect.

      Volume: 11(4) Pages: 500-8

    • Related Report
      2011 Final Research Report
  • [Presentation] Promoter targeting small RNA suppresses HIV-1 infection in vivo.2013

    • Author(s)
      Kazuo Suzuki, S Hattori, K Marks, C Ahlenstiel, M Millington, M Boyd, G Symonds, Takaomi Ishida, D Cooper, Seiji Okada, A Kelleher.
    • Organizer
      20^<th> Conference on retroviruses and opportunistic infections 2013.
    • Place of Presentation
      Atlanta, USA.
    • Related Report
      2011 Final Research Report
  • [Presentation] Promoter targeting small RNA suppresses HIV-1 infection in vivo.2013

    • Author(s)
      Kazuo Suzuki, S Hattori, K Marks, C Ahlenstiel, M Millington, M Boyd, G Symonds, Takaomi Ishida, D Cooper, Seiji Okada, A Kelleher.
    • Organizer
      20th Conference on retroviruses and opportunistic infections 2013.
    • Place of Presentation
      Atlanta, USA
    • Related Report
      2011 Annual Research Report
  • [Presentation] Kelleher and Toshiki Watanabe.The epigenetic regulation of HIV-1 virus gene expression2012

    • Author(s)
      Takaomi Ishida, Kazuo Suzuki, Makoto Yamagishi, Ariko Miyake, David A Cooper, Anthony D.
    • Organizer
      Cold Sprimg Harbor retrovirus meeting.
    • Place of Presentation
      New York, USA.
    • Related Report
      2011 Final Research Report
  • [Presentation] Kelleher and Toshiki Watanabe The Epigenetic Regulation of HIV-1 Virus Gene Expression.2012

    • Author(s)
      Takaomi Ishida, Kazuo Suzuki, Makoto Yamagishi, Ariko Miyake, David A Cooper, Anthony D.
    • Organizer
      Keystone Symposia, Frontiers HIV Pathogenesis, Therapy and Eradication
    • Related Report
      2011 Final Research Report
  • [Presentation] プロモーター領域を標的とした siRNA はHIV-1 の増殖抑制を誘導する(in vovo の実験系による評価)2012

    • Author(s)
      鈴木一雄、服部真一郎、前田洋助、石田尚臣、David Cooper、岡田誠治、Anthony Kelleher.
    • Organizer
      日本エイズ学会学術集会
    • Place of Presentation
      横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] HIV-1 潜伏化の成立と維持における Polycomb group の機能解析2012

    • Author(s)
      松田有加、山岸誠、小林美栄、原拓馬、石田尚臣、渡邉 俊樹
    • Organizer
      日本ウイルス学会学術集会
    • Place of Presentation
      大阪
    • Related Report
      2011 Final Research Report
  • [Presentation] HIV-1 由来 antisense RNA によるウイルス複製抑制メカニス〓 ムの解析2012

    • Author(s)
      小林(石原)美栄、 山岸誠、 松田有加、 中野和民、 矢持忠徳、 石田尚臣 、渡邉俊樹
    • Organizer
      日本ウイルス学会学術集会
    • Place of Presentation
      大阪
    • Related Report
      2011 Final Research Report
  • [Presentation] The epigenetic regulation of HIV-1 virus gene expression2012

    • Author(s)
      Takaomi Ishida, Kazuo Suzuki, Makoto Yamagishi, Ariko Miyake, David A Cooper, Anthony D. Kelleher and Toshiki Watanabe.
    • Organizer
      Cold Spring Harbor retrovirus meeting.
    • Place of Presentation
      New York, USA
    • Related Report
      2011 Annual Research Report
  • [Presentation] プロモーター領域を標的としたsiRNAはHIV-1の増殖抑制を誘導する(in vovoの実験系による評価)2012

    • Author(s)
      鈴木一雄、 服部真一郎、 前田洋助、石田尚臣、David Cooper、 岡田誠治、 Anthony Kelleher.
    • Organizer
      日本エイズ学会学術集会
    • Place of Presentation
      横浜
    • Related Report
      2011 Annual Research Report
  • [Presentation] HIV-1 由来新規 anisense RNA, ALe はウイルス増殖を抑制する2011

    • Author(s)
      小林美栄、山岸誠、原拓馬、松田有加、三宅在子、中野和民、石田尚臣、渡邉俊樹
    • Organizer
      日本エイズ学会学術集会
    • Place of Presentation
      東京
    • Related Report
      2011 Final Research Report
  • [Presentation] HIV-1由来新規anisense RNA, ALeはウイルス増殖を抑制する2010

    • Author(s)
      小林美栄、山岸誠、原拓馬、松田有加、三宅在子、中野和民、石田尚臣、渡邉俊樹
    • Organizer
      日本エイズ学会
    • Place of Presentation
      グランドプリンスホテル高輪ザ・プリンスさくらタワー東京(東京都)
    • Year and Date
      2010-11-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] The Epgenetic Regulation of HIV-1 virus Gene Expression.2010

    • Author(s)
      Takaomi Ishida, Kazuo Suzuki, Makoto Yamagishi, David A Cooper, Anthony D. Lelleher, Kentaro Semba, Tadashi Yamamoto,Aikichi Iwamoto and Toshiki Watanabe.
    • Organizer
      The 7th Japan-China joint laboratory workshop pathogenesis, gene regulation, and signal transduction.
    • Place of Presentation
      Beijing, China.
    • Year and Date
      2010-10-25
    • Related Report
      2011 Final Research Report
  • [Presentation] HIV-1 由来新規 antisense RNA, ALe の同定と機能解析2010

    • Author(s)
      小林美栄、山岸誠、原拓馬、松田有加、三宅在子、中野和民、石田尚臣、渡邉俊樹
    • Organizer
      日本ウイルス学会学術集会
    • Place of Presentation
      徳島
    • Related Report
      2011 Final Research Report
  • [Presentation] ヒトPBMCを用いたHIV-1潜伏感染モデルの構築と解析2009

    • Author(s)
      原拓馬, 松田有加, 山岸誠, 三宅在子, 石田尚臣, 渡邊俊樹
    • Organizer
      日本エイズ学会学術集会
    • Place of Presentation
      名古屋(名古屋国際会議場)
    • Year and Date
      2009-11-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] HIV-1ゲノムアンチセンス鎖にコードするRNAの探索と機能解析2009

    • Author(s)
      小林美栄, 原拓馬, 山岸誠, 三宅在子, 石田尚臣, 渡邊俊樹
    • Organizer
      日本エイズ学会学術集会
    • Place of Presentation
      名古屋(名古屋国際会議場)
    • Year and Date
      2009-11-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] プロモーター領域をターゲットとしたshRNAにより特展的HIV-1 gene silence2009

    • Author(s)
      鈴木一雄, 石田尚臣, 山岸誠, Cooper David, Kelleher Anthony, 渡邊俊樹
    • Organizer
      日本エイズ学会学術集会
    • Place of Presentation
      名古屋(名古屋国際会議場)
    • Year and Date
      2009-11-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] HIV-1潜伏化における Polycomb group の機能解析2009

    • Author(s)
      山岸誠, 松田有加, 原拓馬, 三宅在子, 鈴木一雄, 石田尚臣, 渡邉俊樹
    • Organizer
      日本ウイルス学会学術集会
    • Place of Presentation
      東京(都市センターホテル)
    • Year and Date
      2009-10-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] HIV-1にコードする antisonse RNAの新規探索と機能解析2009

    • Author(s)
      小林美栄, 原拓馬, 山岸誠, 三宅在子, 石田尚臣, 渡邉俊樹
    • Organizer
      日本ウイルス学会学術集会
    • Place of Presentation
      東京(都市センターホテル)
    • Year and Date
      2009-10-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヒトPBMCを用いたHIV-1潜伏感染モデルの構築と解析2009

    • Author(s)
      原拓馬, 松田有加, 山岸誠, 三宅在子, 石田尚臣, 渡邉俊樹
    • Organizer
      日本ウイルス学会学術集会
    • Place of Presentation
      東京(都市センターホテル)
    • Year and Date
      2009-10-25
    • Related Report
      2009 Annual Research Report
  • [Book] 山梨裕司編集シグナル伝達キーワード2012

    • Author(s)
      山本雅、仙波憲太郎
    • Publisher
      羊土社
    • Related Report
      2011 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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