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Delineation of molecular basis of autism using array CGH

Research Project

Project/Area Number 21591341
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Pediatrics
Research InstitutionNational Research Institute for Child Health and Development

Principal Investigator

KOSAKI Rika  独立行政法人国立成育医療研究センター, 器官病態系内科部・遺伝診療科, 医長 (50234745)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2011: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords小児神経学 / オリゴDNAアレイ / CGH法 / 自閉症 / 遺伝 / アレイCGH
Research Abstract

Autism is a complex developmental disability that typically appears during the first three years of life and is the result of a neurological disorder that affects the normal functioning of the brain, impacting development in the areas of social interaction and communication skills. Presumably, genetic background contributes to autism. Yet, only 10% of patients exhibit definitive genetic abnormalities. We designed a custom array with 60000 probes. Probes were densely allocated at genes on X chromosome, genes of which mutations are known to cause multiple malformation syndromes with developmental delay(i. e. Cornelia de Lange syndrome, Rubinstein-Taybi syndrome), and genes already known to be related with autism(NLGN3, NGLN4, NRXN1, SHANK3, CNTNAP2, PCDH10, CNTN3, NHE9, NHE6, DIA1, and A2BP1) and their homologous/upstream/downstream genes.
We have identified two critical cases : One patient who had a duplication of 5.4MB at 6q14, 2-15 including the GABA receptor GABRB3 ; the other patient had a deletion of 6.6MB at 2p16.3 including NRXN1. NRXN forms a complex with NLGN on the post synaptic membrane and plays a critical role on neural transmission mediated through GABA receptors and glutamine receptors. We suggest that duplication of GABRB3 and deletion of NRXN1 contributes to autism.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (27 results)

All 2012 2011 2010 2009

All Journal Article (17 results) (of which Peer Reviewed: 9 results) Presentation (10 results)

  • [Journal Article] Branchial arch defects and 19p13.12 microdeletion : defining the critical region into a 0.8 M base interval2011

    • Author(s)
      Kosaki K, Saito H, Kosaki R, Torii C, Kishi K, Takahashi T
    • Journal Title

      Am J Med Genet A

      Volume: 155A(9) Pages: 2212-4

    • Related Report
      2011 Final Research Report
  • [Journal Article] Clinical application of array-based comparative genomic hybridization by two-stage screening for 536 patients with mental retardation and multiple congenital anomalies2011

    • Author(s)
      Hayashi S, Imoto I, Aizu Y, Okamoto N, Mizuno S, Kurosawa K, Okamoto N, Honda S, Araki S, Mizutani S, Numabe H, Saitoh S, Kosho T, Fukushima Y, Mitsubuchi H, Endo F, Chinen Y, Kosaki R, Okuyama T, Ohki H, Yoshihashi H, Ono M, Takada F, Ono H, Yagi M, Matsumoto H, Makita Y, Hata A, Inazawa J
    • Journal Title

      J Hum Genet

      Volume: 56(2) Pages: 110-24

    • NAID

      10030657707

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Journal Article] Overgrowth of prenatal onset associated with submicroscopic 9q22.3 deletion2011

    • Author(s)
      Kosaki R, Fujita H, Ueoka K, Torii C, Kosaki K
    • Journal Title

      Am J Med Genet A

      Volume: 155(4) Pages: 903-5

    • Related Report
      2011 Final Research Report
  • [Journal Article] Monozygotic twins of Rubinstein-Taybi syndrome discordant for glaucoma2011

    • Author(s)
      Kosaki R, Fujita H, Takada H, Okada M, Torii C, Kosaki K
    • Journal Title

      Am J Med Genet A

      Volume: 155A(5) Pages: 1189-91

    • Related Report
      2011 Final Research Report
  • [Journal Article] Branchial arch defects and 19p13.12 microdeletion : defining the critical region in to a 0.8 M base interval2011

    • Author(s)
      Kosaki K, Saito H, Kosaki R, Torii C, Kishi K, Takahashi T
    • Journal Title

      Am J Med Genet A

      Volume: 155A(9) Pages: 2212-4

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Monozygotic twins of Rubinstein-Taybi syndrome discordant for glaucoma2011

    • Author(s)
      Kosaki R, Fujita H, Takada H, Okada M, Torii C, Kosaki K
    • Journal Title

      Am.J Med Genet A

      Volume: 155A(5) Pages: 1189-91

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Overgrowth of prenatal onset associated with submicroscopic 9q22.3 deletion2011

    • Author(s)
      Kosaki R, Fujita H, Ueoka K, Torii C, Kosaki K
    • Journal Title

      Am.J Med Genet A

      Volume: 155(4) Pages: 903-5

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Microdeletion of the Down syndrome critical region at 21q222010

    • Author(s)
      Fujita H, Torii C, Kosaki R, Yamaguchi S, Kudoh J, Hayashi K, Takahashi T, Kosaki K
    • Journal Title

      Am J Med Genet A

      Volume: 152A(4) Pages: 950-3

    • Related Report
      2011 Final Research Report
  • [Journal Article] Interstitial microdeletion of 4p16.3 : contribution of WHSC1 haploinsufficiency to the pathogenesis of developmental delay in Wolf-Hirschhorn syndrome2010

    • Author(s)
      Izumi K, Okuno H, Maeyama K, Sato S, Yamamoto T, Torii C, Kosaki R, Takahashi T, Kosaki K
    • Journal Title

      Am J Med Genet A

      Volume: 152A(4) Pages: 1028-32

    • Related Report
      2011 Final Research Report
  • [Journal Article] Transverse limb defect in a patient with Jacobsen syndrome : concurrence of malformation and disruption2010

    • Author(s)
      Fujita H, Yanagi T, Kosaki R, Torii C, Bamba M, Takahashi T, Kosaki K
    • Journal Title

      Am J Med Genet A

      Volume: 152A(4) Pages: 1033-5

    • Related Report
      2011 Final Research Report
  • [Journal Article] Cri-du-Chat Syndrome Cytogenetically Cryptic Recombination Aneusomy of Chromosome 5 : Implications in Recurrence Risk Estimation2010

    • Author(s)
      Ohnuki Y, Torii C, Kosaki R, Yagihashi T, Sago H, Hayashi K, Yasukawa K, Takahashi T, Kosaki K
    • Journal Title

      Mol Syndromol

      Volume: 1(2) Pages: 95-98

    • Related Report
      2011 Final Research Report
  • [Journal Article] Cri-du-Chat Syndrome Cytogenetically Cryptic Recombination Aneusomy of Chromosome 5: Implications in Recurrence Risk Estimation.2010

    • Author(s)
      Ohnuki Y, Torii C, Kosaki R, Yagihashi T, Sago H, Hayashi K, Yasukawa K, Takahashi T, Kosaki K.
    • Journal Title

      Mol Syndromol.

      Volume: 2 Pages: 95-98

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transverse limb defect in a patient with Jacobsen syndrome : concurrence of malformation and disruption.2010

    • Author(s)
      Fujita H, Yanagi T, Kosaki R, Torii C, Bamba M, Takahashi T, Kosaki K.
    • Journal Title

      Am J Med Genet A.

      Volume: 152 Pages: 1033-1035

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interstitial microdeletion of 4p16.3 : contribution of WHSC1 haploinsufficiency to the pathogenesis of developmental delay in Wolf-Hirschhorn syndrome2010

    • Author(s)
      Izumi K, Okuno H, Maeyama K, Sato S, Yamamoto T, Torii C, Kosaki R, Takahashi T, Kosaki K.
    • Journal Title

      Am J Med Genet A.

      Volume: 152 Pages: 1028-1032

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Microdeletion of the Down syndrome critical region at 21q22. Am J Med Genet A.2010 Apr;152A(4): 950-3.2010

    • Author(s)
      Fujita H, Torii C, Kosaki R, Yamaguchi S, Kudoh J, Hayashi K, Takahashi T, Kosaki K.
    • Journal Title

      Am J Med Genet A.

      Volume: 152 Pages: 950-953

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two distinctive classic genetic syndromes, 22q11.2 deletion syndrome and Angelman syndrome, occurring within the same family2009

    • Author(s)
      Kosaki R, Migita O, Takahashi T, Kosaki K.
    • Journal Title

      Am J Med Genet A. 149

      Pages: 702-705

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Adult phenotype of Mulvihill-Smith syndrome2009

    • Author(s)
      Yagihashi T, Kato M, Izumi K, Kosaki R, Yago K, Tsubota K, Sato Y, Okubo M, Watanabe G, Takahashi T, Kosaki K.
    • Journal Title

      Am J Med Genet A. 149

      Pages: 496-500

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] アレイCGHで2p部分欠失を認めた自閉症患者についての検討2012

    • Author(s)
      藤田秀樹、小崎里華
    • Organizer
      第35回日本小児遺伝学会
    • Place of Presentation
      久留米
    • Year and Date
      2012-04-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] G分染法でde novo均衡型と診断されたてんかん・発達遅滞症例のアレイCGH解析2011

    • Author(s)
      藤田秀樹,小崎里華
    • Organizer
      日本小児遺伝学会学術集会
    • Year and Date
      2011-08-11
    • Related Report
      2011 Final Research Report
  • [Presentation] G分染法でde novo"均衡型"と診断されたてんかん・発達遅滞症例のアレイCGH解析2011

    • Author(s)
      藤田秀樹、小崎里華
    • Organizer
      第34回日本小児遺伝学会
    • Place of Presentation
      東京
    • Year and Date
      2011-08-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] 閉症患者検体を用いたアレイCGH解析による原因遺伝子の検討2011

    • Author(s)
      藤田秀樹,小崎里華
    • Organizer
      第51回日本先天異常学会学術集会
    • Year and Date
      2011-07-22
    • Related Report
      2011 Final Research Report
  • [Presentation] 当院で経験した未診断の発達遅滞・先天性多発奇形症例のアレイCGH解析胎2010

    • Author(s)
      藤田秀樹,鳥居千春,緒方勤,小崎健次郎,小崎里華
    • Organizer
      第55回日本人類遺伝学会
    • Related Report
      2011 Final Research Report
  • [Presentation] Holoprosencephaly, ectrodactyly, and bilateral cleft lip-palate syndrome and Xq microduplication : A clue to understanding the genetic cause2010

    • Author(s)
      Kosaki R., Okuno N. Torii C. Kosaki, K.
    • Organizer
      American Society of Human Genetics
    • Related Report
      2011 Final Research Report
  • [Presentation] Holoprosencephaly, ectrodactyly, and bilateral cleft lip-palate syndrome and Xq microduplication : A clue to understanding the genetic cause.2010

    • Author(s)
      Kosaki R., Okuno N., Torii C.Kosaki, K.
    • Organizer
      American Society of Human Genetics
    • Place of Presentation
      USA
    • Related Report
      2010 Annual Research Report
  • [Presentation] Microdeletion of the Down syndrome critical region at 21q22. American Society of Human Genetics, 20092009

    • Author(s)
      R.Kosaki, H.Fujita, C.Torii, J.Kudoh, T.Takahashi, K.Kosaki
    • Organizer
      American Society of Human Genetics
    • Place of Presentation
      USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] Axenfeld-Rieger anomaly and Axenfeld-Rieger syndrome : clinical and genomic analyses on three patients with chromosomal defects at 6p252009

    • Author(s)
      Tonoki, N.Harada, O.Shimokawa, T.Shinpo, N.Kudo, K.Sato, R.Kosaki, A.Sato, N.Matsumoto
    • Organizer
      American Society of Human Genetics
    • Place of Presentation
      USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] Interstitial microdeletion of 4p16.3 : Contribution of WHSC1 haploinsufficiency to the pathogenesis of developmental delay in Wolf-Hirschhorn syndrome2009

    • Author(s)
      R.Kosaki, K.Izumi, H.Okuno, K.Maeyama, S.Sato, T.Yamamoto, C.Torii, R.Kosaki, T.Takahashi
    • Organizer
      American Society of Human Genetics
    • Place of Presentation
      USA
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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