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Development of high-speed atomic force/fluorescence microscopy for simultaneous observation of protein dynamics and chemical reactions

Research Project

Project/Area Number 21681017
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Nanomaterials/Nanobioscience
Research InstitutionKanazawa University

Principal Investigator

UCHIHASHI Takayuki  金沢大学, 数物科学系, 准教授 (30326300)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2011: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2010: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2009: ¥8,840,000 (Direct Cost: ¥6,800,000、Indirect Cost: ¥2,040,000)
Keywords1分子イメージング / ナノ計測 / ナノプローブ / 蛍光顕微鏡
Research Abstract

We have developed a combined high-speed atomic force microscopy(AFM) with fluorescence microscopy towards simultaneous observation of single-molecule conformational change of protein and chemical reaction such as ATP binding process. For a stand-alone-type high-speed AFM which can be mounted on an optical microscope, miniaturization of AFM head was carried out and the optical tracking system was developed. Using this system, we succeeded in observing GroEL at a frame rate of 3 frames/s. Further, we confirmed that it enables us to simultaneously obtain AFM and fluorescent images at same area. We also developed a wide-range scanner for fast imaging of bacterial cells and applied it to observation of bacteriolysis reaction of Bacillus subtilis induced by lysozyme.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (60 results)

All 2012 2011 2010 2009 Other

All Journal Article (16 results) (of which Peer Reviewed: 16 results) Presentation (32 results) Book (7 results) Remarks (1 results) Patent(Industrial Property Rights) (4 results) (of which Overseas: 4 results)

  • [Journal Article] Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy2012

    • Author(s)
      T.Uchihashi, N.Kodera, T.Ando
    • Journal Title

      Nature Protocols

      Volume: (in press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Traffic jams reduce hydrolytic efficiency of cellulase on cellulose surface2011

    • Author(s)
      K. Igarashi, T. Uchihashi, A. Koivula, M. Wada, S. Kimura, T. Okamoto, M. Penttila, T. Ando, and M. Samejima
    • Journal Title

      Science

      Volume: 333 Pages: 1279-1282

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-speed atomic force microscopy reveals rotary catalysis of rotorless F1-ATPase2011

    • Author(s)
      T. Uchihashi, R. Iino, T. Ando, H. Noji
    • Journal Title

      Science

      Volume: 333 Pages: 755-758

    • NAID

      120006575873

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural changes in bacteriorhodopsin in response to alternate illumination observed by high-speed atomic force microscopy2011

    • Author(s)
      M. Shibata, T. Uchihashi, H. Yamashita, H. Kandori, and T. Ando
    • Journal Title

      Angew. Chem. Int. ed.

      Volume: 50 Pages: 4410-4413

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Direct Observation of Surfactant Aggregate Behavior on a Mica Surface using High-Speed Atomic Force Microscopy2011

    • Author(s)
      S. Inoue, T. Uchihashi, D. Yamamoto, and T. Ando
    • Journal Title

      Chem. Commun

      Volume: 47 Pages: 4974-4976

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-speed atomic force microscopy reveals rotary catalysis of rotorless F1-ATPase2011

    • Author(s)
      T. Uchihashi, R. Iino, T. Ando, and H. Noji
    • Journal Title

      Science

      Volume: 333 Issue: 6043 Pages: 755-758

    • DOI

      10.1126/science.1205510

    • NAID

      120006575873

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-speed atomic force microscopy and biomolecular processes2011

    • Author(s)
      T.Uchihashi, T.Ando
    • Journal Title

      Methods Mol.Biol.

      Volume: 736 Pages: 285-300

    • DOI

      10.1007/978-1-61779-105-5_18

    • ISBN
      9781617791048, 9781617791055
    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural changes in bacteriorhodopsin in response to alternate illumination observed by high-speed atomic force microscopy2011

    • Author(s)
      M.Shibata, T.Uchihashi, H.Yamashita, H.Kandori, T.Ando
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 123 Pages: 4502-4505

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Surfactant Aggregate Behavior on a Mica Surface using High-Speed Atomic Force Microscopy2011

    • Author(s)
      S.Inoue, T.Uchihashi, D.Yamamoto, T.Ando
    • Journal Title

      Chemical Communications

      Volume: 47 Pages: 4974-4976

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-speed atomic force microscopy techniques for observing dynamic biomolecular processes2010

    • Author(s)
      D. Yamamoto, T. Uchihashi, N. Kodera, H. Yamashita, S. Nishikori, T. Ogura, M. Shibata, and T. Ando
    • Journal Title

      Methods Enzymol

      Volume: 475 Pages: 541-564

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Visualization and structural analysis of the bacterial magnetic organelle magnetosome using atomic force microscopy2010

    • Author(s)
      D. Yamamoto, A. Taoka, T. Uchihashi, H. Sasaki, H. Watanabe, T. Ando, and Y. Fukumori
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 107 Pages: 9382-9387

    • NAID

      120002165225

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-speed atomic force microscopy shows dynamic molecular processes in photo-activated bacteriorhodopsin2010

    • Author(s)
      M. Shibata, H. Yamashita, T. Uchihashi, H. Kandori, and T. Ando
    • Journal Title

      Nature Nanotechnology

      Volume: 5 Pages: 208-212

    • NAID

      120002086392

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Visualization and structural analysis of the bacterial magnetic organelle magnetosome using atomic force microscopy2010

    • Author(s)
      D.Yamamoto, A.Taoka, T.Uchihashi, H.Sasaki, H.Watanabe, T.Ando, Y.Fukumori
    • Journal Title

      Proc.Natl.Acad.Sci.USA

      Volume: 107 Pages: 9382-9387

    • NAID

      120002165225

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-speed atomic force microscopy techniques for observing dynamic biomolecular processes2010

    • Author(s)
      D.Yamamoto, T.Uchihashi, N.Kodera, H.Yamashita, S.Nishikori, T.Ogura, M.Shibata, T.Ando
    • Journal Title

      Methods in Enzymology (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-speed atomic force microscopy shows dynamic molecular processes in photo-activated bacteriorhodopsin2010

    • Author(s)
      M.Shibata, H.Yamashita, T.Uchihashi, H.Kandori, T.Ando
    • Journal Title

      Nature Nanotechnology 5

      Pages: 208-212

    • NAID

      120002086392

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy

    • Author(s)
      T. Uchihashi, N. Kodera, and T. Ando
    • Journal Title

      Nature Protocols

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] 高速原子間力顕微鏡で探るタンパク質のダイナミクス2012

    • Author(s)
      内橋貴之,古寺哲幸,安藤敏夫
    • Organizer
      日本表面科学会平成23年度関西支部セミナー
    • Place of Presentation
      京都大学,京都府
    • Year and Date
      2012-03-07
    • Related Report
      2011 Final Research Report
  • [Presentation] 高速原子間力顕微鏡で探るタンパク質のダイナミクス2012

    • Author(s)
      内橋貴之
    • Organizer
      日本表面科学会平成23年度関西支部セミナー
    • Place of Presentation
      京都大学宇治キャンパス、京都府(招待講演)
    • Year and Date
      2012-03-07
    • Related Report
      2011 Annual Research Report
  • [Presentation] DIRECT VISUALIZATION OF CELLOBIOHYDROLASE ON CRYSTALLINE CELLULOSE USING HIGH-SPEED ATOMIC FORCE2012

    • Author(s)
      内橋貴之
    • Organizer
      56^<th> Annual Meeting of Biophysical Society
    • Place of Presentation
      San Diego, California
    • Year and Date
      2012-02-29
    • Related Report
      2011 Annual Research Report
  • [Presentation] Direct Visualization of Proteins in Action by High-Speed Atomic Force Microscopy2012

    • Author(s)
      T. Uchihashi
    • Organizer
      The 10th Asia-Pacific Microscopy Conference
    • Place of Presentation
      The University of Western Australia
    • Year and Date
      2012-02-06
    • Related Report
      2011 Final Research Report
  • [Presentation] Direct Visualization of Proteins in Action by High-Speed Atomic Force Microscopy2012

    • Author(s)
      内橋貴之
    • Organizer
      The 10th Asia-Pacific Microscopy Conference (APMC10)
    • Place of Presentation
      Perth Convention and Exhibition Centre, Perth, Australia(招待講演)
    • Year and Date
      2012-02-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] 高速原子間力顕微鏡で明らかにするタンパク質のダイナミクス2011

    • Author(s)
      内橋貴之,古寺哲之,安藤敏夫
    • Organizer
      日本顕微鏡学会走査型プローブ顕微鏡(SPM)分科会平成23年度オープン研究会
    • Place of Presentation
      茨城県
    • Year and Date
      2011-12-12
    • Related Report
      2011 Final Research Report
  • [Presentation] 高速原子間力顕微鏡で明らかにするタンパク質のダイナミクス2011

    • Author(s)
      内橋貴之
    • Organizer
      日本顕微鏡学会走査型プローブ顕微鏡(SPM)分科会平成23年度オープン研究会走査型プローブ顕微鏡における最先端技術~イノベーションのキーテクノロジー~
    • Place of Presentation
      独立行政法人物質・材料研究機構千現地区、茨城県(招待講演)
    • Year and Date
      2011-12-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] High-Speed Atomic Force Microscopy : a tool for elucidating structural dynamics of membrane proteins2011

    • Author(s)
      内橋貴之,柴田幹大,山下隼人,神取秀樹,安藤敏夫
    • Organizer
      第49回日本生物物理学会年会シンポジウム
    • Place of Presentation
      兵庫県立大学,兵庫県
    • Year and Date
      2011-09-17
    • Related Report
      2011 Final Research Report
  • [Presentation] High-Speed Atomic Force Microscopy : a tool for elucidating structural dynamics of membrane proteins2011

    • Author(s)
      内橋貴之
    • Organizer
      第49回日本生物物理学会年会シンポジウム,New experimental tools for structural changes of membrane proteins : Beyond X-ray structure
    • Place of Presentation
      兵庫県立大学、兵庫県(招待講演)
    • Year and Date
      2011-09-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] Real-time imaging of protein molecules in action by high-speed AFM2011

    • Author(s)
      内橋貴之,安藤敏夫
    • Organizer
      第63回細胞生物学会大会
    • Place of Presentation
      北海道大学,北海道
    • Year and Date
      2011-06-28
    • Related Report
      2011 Final Research Report
  • [Presentation] 高速AFMを用いた膜超分子のダイナミクス観察2010

    • Author(s)
      内橋貴之
    • Organizer
      第36回生体エネルギー研究会
    • Place of Presentation
      大阪大学,大阪府
    • Year and Date
      2010-11-18
    • Related Report
      2011 Final Research Report
  • [Presentation] 高速AFMを用いた膜超分子のダイナミクス観察2010

    • Author(s)
      内橋貴之
    • Organizer
      第36回 生体エネルギー研究会
    • Place of Presentation
      大阪大学銀杏会館(大阪府)
    • Year and Date
      2010-11-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] AFMを用いたタンパク質研究の現状と展望について2010

    • Author(s)
      内橋貴之
    • Organizer
      新世代研究所・バイオSPM研究会BNM(Bio-Nano Mechanics)研究会
    • Place of Presentation
      新世代研究所,東京都
    • Year and Date
      2010-11-16
    • Related Report
      2011 Final Research Report
  • [Presentation] AFMを用いたタンパク質研究の現状と展望について2010

    • Author(s)
      内橋貴之
    • Organizer
      新世代研究所・バイオSPM研究会BNM(Bio-Nano Mechanics)研究会
    • Place of Presentation
      新世代研究所(東京都)
    • Year and Date
      2010-11-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] Conformational Dynamics of Biological Molecules Captured by High-Speed AFM2010

    • Author(s)
      T. Uchihashi
    • Organizer
      24^th International Microprocesses and Nanotechnology Conference
    • Place of Presentation
      Rihga Royal Hotel Kokura(福岡県)
    • Year and Date
      2010-11-10
    • Related Report
      2011 Final Research Report
  • [Presentation] Conformational Dynamics of Biological Molecules Captured by High-Speed AFM2010

    • Author(s)
      内橋貴之
    • Organizer
      MNC 2010, 24^<th> International Microprocesses and Nanotechnology Conference
    • Place of Presentation
      リーガロイヤルホテル小倉(福岡県)
    • Year and Date
      2010-11-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] 原子間力顕微鏡を利用した生物物理研究 現状と将来展望2010

    • Author(s)
      内橋貴之
    • Organizer
      名古屋大学工学研究科テクノ・シンポジウム「生物物理の未来研究会」
    • Place of Presentation
      名古屋大学工学研究科(愛知県)
    • Year and Date
      2010-09-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] Watching protein dynamics in action with high-speed AFM2010

    • Author(s)
      T. Uchihashi
    • Organizer
      167 Committee satellite workshop on SPM
    • Place of Presentation
      石川県立音楽堂(石川県)
    • Year and Date
      2010-08-04
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 生体分子の機能動態を可視化する高速AFM技術2010

    • Author(s)
      内橋貴之
    • Organizer
      平成22年度計測自動制御学会関西支部講習会
    • Place of Presentation
      学校法人常翔学園大阪センター
    • Year and Date
      2010-06-10
    • Related Report
      2011 Final Research Report
  • [Presentation] 生体分子の機能動態を可視化する高速AFM技術2010

    • Author(s)
      内橋貴之
    • Organizer
      平成22年度計測自動制御学会関西支部講習会ナノ・マイクロスケールにおける最新トピックス-計測から設計開発まで-
    • Place of Presentation
      学校法人常翔学園 大阪センター(大阪府)
    • Year and Date
      2010-06-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] Direct visualization of dynamic processes on biomolecules with high-speed AFM2010

    • Author(s)
      T. Uchihashi
    • Organizer
      AFM BioMed Conference(3^rd International Meeting on AFM in Lifesciences and Medicine)
    • Place of Presentation
      Hotel Isrta(Red Island, Croatia)
    • Year and Date
      2010-05-13
    • Related Report
      2011 Final Research Report
  • [Presentation] Direct visualization of dynamic processes on biomolecules withhigh-speed AFM2010

    • Author(s)
      内橋貴之
    • Organizer
      AFM BioMed Conference (3^<rd> International Meeting on AFM in Lifesciences and Medicine)
    • Place of Presentation
      Red Island(クロアチア)
    • Year and Date
      2010-05-13
    • Related Report
      2010 Annual Research Report
  • [Presentation] 高速AFMによるバイオ分子の液中動的観察2010

    • Author(s)
      内橋貴之,安藤敏夫
    • Organizer
      日本顕微鏡学会第34回関東支部講演会
    • Place of Presentation
      帝京大学医学部,東京都
    • Year and Date
      2010-03-20
    • Related Report
      2011 Final Research Report
  • [Presentation] 高速AFMによるバイオ分子の液中動的観察2010

    • Author(s)
      内橋貴之
    • Organizer
      日本顕微鏡学会 第34回関東支部講演会
    • Place of Presentation
      帝京大学医学部(東京都)
    • Year and Date
      2010-03-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] 高速原子間力顕微鏡による生体分子のダイナミクス観察-現状と将来展望-2009

    • Author(s)
      内橋貴之
    • Organizer
      ナノプローブテクノロジー第167委員会第56回研究会
    • Place of Presentation
      (独)情報通信研究機構本部,東京都
    • Year and Date
      2009-11-10
    • Related Report
      2011 Final Research Report
  • [Presentation] 高速原子間力顕微鏡による生体分子のダイナミクス観察~現状と将来展望~2009

    • Author(s)
      内橋貴之
    • Organizer
      ナノプローブテクノロジー第167委員会 第56回研究会
    • Place of Presentation
      (独)情報通信研究機構本部(東京都)
    • Year and Date
      2009-11-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] 高速AFMイメージング技術で視る生体分子の機能動態2009

    • Author(s)
      内橋貴之
    • Organizer
      第20回化学とマイクロ・ナノシステム研究会・ISMM2009
    • Place of Presentation
      金沢エクセルホテル東急,石川県
    • Year and Date
      2009-11-09
    • Related Report
      2011 Final Research Report
  • [Presentation] 高速AFMイメージング技術で視る生体分子の機能動態2009

    • Author(s)
      内橋貴之
    • Organizer
      第20回化学とマイクロ・ナノシステム研究会・ISMM2009
    • Place of Presentation
      金沢エクセルホテル東急(石川県)
    • Year and Date
      2009-11-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] Direct Visualization of Protein Dynamics using High-Speed AFM2009

    • Author(s)
      T. Uchihashi
    • Organizer
      International Symposium on Innovative Nanoscience of Supermolecular Motor Proteins Working in Biomembrane
    • Place of Presentation
      Kyoto University(京都府)
    • Year and Date
      2009-09-08
    • Related Report
      2011 Final Research Report
  • [Presentation] Direct Visualization of Protein Dynamics using High-Speed AFM2009

    • Author(s)
      内橋貴之
    • Organizer
      International Symposium on Innovative Nanoscience of Supermolecular Motor Proteins Working in Biomembranes
    • Place of Presentation
      京都大学芝蘭会館(京都府)
    • Year and Date
      2009-09-08
    • Related Report
      2009 Annual Research Report
  • [Presentation] 高速AFMによる生体分子のナノダイナミクス計測2009

    • Author(s)
      内橋貴之
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      本全日空ホテルニュースカイ,熊本県
    • Year and Date
      2009-05-22
    • Related Report
      2011 Final Research Report
  • [Presentation] 高速AFMによる生体分子のナノダイナミクス計測2009

    • Author(s)
      内橋貴之
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      本全日空ホテルニュースカイ(熊本県)
    • Year and Date
      2009-05-22
    • Related Report
      2009 Annual Research Report
  • [Book] Life at the Nanoscale : Atomic Force Microscopy of Live Cells2011

    • Author(s)
      T. Uchihashi, T. Ando
    • Publisher
      Pan Stanford Publishing
    • Related Report
      2011 Final Research Report
  • [Book] Atomic Force Microscopy in Biomedical Research : Methods and Protocols2011

    • Author(s)
      T. Uchihashi, T. Ando
    • Publisher
      Humana Press
    • Related Report
      2011 Final Research Report
  • [Book] Life at the Nanoscale : Atomic Force Microscopy of Live Cells : High speed atomic force microscopy for the dynamic imaging of protein crystals"2011

    • Author(s)
      T.Uchihashi, T.Ando
    • Publisher
      Pan Stanford Publishing(in press)
    • Related Report
      2010 Annual Research Report
  • [Book] AFMを用いた酵素反応解析2010

    • Author(s)
      内橋貴之,安藤敏夫
    • Total Pages
      67
    • Publisher
      NTS出版
    • Related Report
      2011 Final Research Report
  • [Book] Life at the Nanoscale : Atomic Force Microscopy of Live Cells2010

    • Author(s)
      T.Uchihashi, T.Ando
    • Publisher
      Pan Stanford Publishing(in press)
    • Related Report
      2009 Annual Research Report
  • [Book] Atomic Force Microscopy : its use in Biomedical Researches2010

    • Author(s)
      T.Uchihashi, T.Ando
    • Publisher
      Humana Press(in press)
    • Related Report
      2009 Annual Research Report
  • [Book] 酵素活用ハンドブック2010

    • Author(s)
      内橋貴之、安藤敏夫
    • Publisher
      NTS(印刷中)
    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://www.s.kanazawa-u.ac.jp/phys/biophys/index.htm

    • Related Report
      2011 Final Research Report
  • [Patent(Industrial Property Rights)] Scan type Probe Microscope and Cantilever Drive Device2011

    • Inventor(s)
      T. Uchihashi, H. Yamashita. T. Ando
    • Industrial Property Rights Holder
      Kanazawa University
    • Acquisition Date
      2011-11-29
    • Related Report
      2011 Final Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] Scan type Probe Microscope and Cantilever Drive Device2011

    • Inventor(s)
      T. Ando, T. Uchihashi, N. Kodera, H. Yamashita
    • Industrial Property Rights Holder
      Kanazawa University
    • Filing Date
      2011-06-07
    • Related Report
      2011 Final Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] Atomic Force Microscope2011

    • Inventor(s)
      T. Ando, T. Uchihashi, N. Kodera, N. Takahashi
    • Industrial Property Rights Holder
      Kanazawa University
    • Filing Date
      2011-06-05
    • Related Report
      2011 Final Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 原子間力顕微鏡及びカンチレバー支持具2010

    • Inventor(s)
      安藤敏夫,岡崎康孝,内橋貴之
    • Industrial Property Rights Holder
      金沢大学
    • Filing Date
      2010-06-01
    • Related Report
      2011 Final Research Report
    • Overseas

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Published: 2009-04-01   Modified: 2025-11-18  

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